Wall clock time and date at job start Mon Mar 30 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47087 * 2 1 4 4 N 1.46504 * 109.47427 * 240.00204 * 2 1 3 5 5 C 1.38860 * 120.00084 * 84.99295 * 4 2 1 6 6 C 1.39571 * 119.83810 * 0.25432 * 5 4 2 7 7 C 1.36340 * 120.15390 * 180.25480 * 6 5 4 8 8 C 1.40882 * 119.84160 * 359.49213 * 7 6 5 9 9 C 1.41138 * 120.15882 * 180.27617 * 8 7 6 10 10 H 1.07996 * 119.99962 * 335.08524 * 9 8 7 11 11 C 1.39865 * 119.99771 * 155.08834 * 9 8 7 12 12 N 1.30901 * 120.00243 * 342.12506 * 11 9 8 13 13 Si 1.86802 * 119.99638 * 162.12643 * 11 9 8 14 14 H 1.48504 * 109.46804 * 94.65268 * 13 11 9 15 15 H 1.48507 * 109.47003 * 214.64709 * 13 11 9 16 16 H 1.48494 * 109.47401 * 334.65143 * 13 11 9 17 17 C 1.40887 * 119.68680 * 0.25971 * 8 7 6 18 18 C 1.36341 * 119.83842 * 359.97438 * 17 8 7 19 19 C 1.52994 * 109.47499 * 120.00129 * 2 1 3 20 20 C 1.53006 * 109.47564 * 180.02562 * 19 2 1 21 21 C 1.53007 * 109.47020 * 299.99885 * 19 2 1 22 22 C 1.52997 * 109.47284 * 59.99895 * 19 2 1 23 23 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46777 * 299.99557 * 1 2 3 25 25 H 1.08997 * 109.47104 * 59.99834 * 1 2 3 26 26 H 0.96999 * 119.99746 * 265.00417 * 4 2 1 27 27 H 1.08001 * 119.92617 * 0.02562 * 6 5 4 28 28 H 1.08003 * 120.08120 * 179.77498 * 7 6 5 29 29 H 0.97004 * 119.99917 * 179.97438 * 12 11 9 30 30 H 1.07999 * 120.08308 * 180.02562 * 17 8 7 31 31 H 1.07997 * 119.92025 * 180.02562 * 18 17 8 32 32 H 1.08997 * 109.46925 * 59.99488 * 20 19 2 33 33 H 1.08997 * 109.47168 * 180.02562 * 20 19 2 34 34 H 1.09001 * 109.46555 * 300.00217 * 20 19 2 35 35 H 1.09001 * 109.46824 * 60.00495 * 21 19 2 36 36 H 1.08997 * 109.47188 * 179.97438 * 21 19 2 37 37 H 1.08997 * 109.47138 * 300.00308 * 21 19 2 38 38 H 1.09003 * 109.46856 * 60.00540 * 22 19 2 39 39 H 1.09001 * 109.47064 * 180.02562 * 22 19 2 40 40 H 1.09006 * 109.47114 * 300.00174 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1509 0.0021 -2.3924 6 6 1.8229 1.3575 -2.4499 7 6 1.9456 2.0427 -3.6223 8 6 2.4150 1.3819 -4.7746 9 6 2.5501 2.0861 -5.9902 10 1 1.9522 2.9665 -6.1737 11 6 3.4585 1.6437 -6.9574 12 7 4.4169 0.8162 -6.6253 13 14 3.3040 2.2338 -8.7230 14 1 4.1874 3.4092 -8.9311 15 1 3.7062 1.1426 -9.6466 16 1 1.8958 2.6186 -8.9949 17 6 2.7491 0.0149 -4.7077 18 6 2.6169 -0.6589 -3.5298 19 6 2.0401 -0.7212 1.2491 20 6 3.5701 -0.7207 1.2495 21 6 1.5301 0.0000 2.4985 22 6 1.5301 -2.1637 1.2492 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 2.2490 -1.6317 -1.1526 27 1 1.4675 1.8640 -1.5647 28 1 1.6880 3.0906 -3.6664 29 1 5.0466 0.5091 -7.2962 30 1 3.1099 -0.4979 -5.5870 31 1 2.8730 -1.7067 -3.4769 32 1 3.9330 0.3071 1.2497 33 1 3.9334 -1.2349 2.1392 34 1 3.9337 -1.2342 0.3594 35 1 0.4401 -0.0001 2.4985 36 1 1.8931 -0.5140 3.3884 37 1 1.8934 1.0277 2.4984 38 1 1.8935 -2.6775 0.3592 39 1 1.8932 -2.6774 2.1394 40 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309813350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:52 Heat of formation + Delta-G solvation = -9.834382 kcal Electronic energy + Delta-G solvation = -18034.310993 eV Core-core repulsion = 15426.319106 eV Total energy + Delta-G solvation = -2607.991887 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37753 -38.84795 -35.90773 -34.16471 -31.75235 -30.79865 -29.95821 -28.17764 -27.82603 -26.18180 -24.14096 -22.78663 -21.92307 -19.49781 -18.94451 -17.80703 -17.13273 -16.50130 -15.81223 -15.44231 -15.16124 -14.76942 -14.67193 -14.33058 -14.17043 -13.85945 -13.42461 -13.33400 -13.12122 -12.89298 -12.76341 -12.71001 -12.64803 -12.52883 -12.28170 -12.09820 -11.67584 -11.55469 -11.46484 -11.25275 -11.09339 -11.00576 -10.24381 -9.38169 -8.53624 -8.11338 -5.98451 1.11891 1.20550 1.40021 1.52904 1.60271 2.28114 2.85686 2.95735 3.76877 3.85954 3.95962 4.05487 4.41182 4.46678 4.52483 4.57584 4.62026 4.82439 4.84444 4.87720 4.96478 5.03235 5.07633 5.10625 5.11588 5.17632 5.24242 5.26056 5.32744 5.41423 5.43818 5.53895 5.63696 5.76479 5.82666 5.95600 6.20102 6.43469 6.71074 6.92834 7.10081 7.17936 7.35421 8.49782 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049734 B = 0.004629 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.861302 B = 6047.486159 C = 6235.468205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.054 0.946 4 N -0.743 5.743 5 C 0.122 3.878 6 C -0.167 4.167 7 C -0.197 4.197 8 C 0.033 3.967 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.033 3.967 12 N -0.843 5.843 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.262 1.262 17 C -0.140 4.140 18 C -0.178 4.178 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.140 4.140 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.391 0.609 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.282 0.718 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -4.606 14.376 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.072 0.928 4 N -0.377 5.377 5 C 0.022 3.978 6 C -0.189 4.189 7 C -0.217 4.217 8 C 0.031 3.969 9 C -0.539 4.539 10 H 0.084 0.916 11 C -0.179 4.179 12 N -0.472 5.472 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.192 1.192 16 H -0.186 1.186 17 C -0.160 4.160 18 C -0.200 4.200 19 C -0.070 4.070 20 C -0.195 4.195 21 C -0.196 4.196 22 C -0.198 4.198 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.227 0.773 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.158 -4.584 14.408 15.681 hybrid contribution 0.344 0.056 -1.183 1.234 sum -3.814 -4.528 13.224 14.489 Atomic orbital electron populations 1.22352 0.96230 1.02288 1.01512 1.20788 0.93372 0.95631 0.84364 0.92752 1.44113 1.75888 1.11438 1.06267 1.17431 1.01883 0.91658 0.86847 1.20107 1.08154 0.93311 0.97370 1.20754 1.09530 0.98198 0.93232 1.17792 0.93707 0.92343 0.93095 1.19578 1.21081 1.12032 1.01239 0.91582 1.26590 0.92769 0.94091 1.04454 1.69923 1.11790 1.28929 1.36546 0.85308 0.79509 0.78700 0.76804 1.19029 1.19249 1.18559 1.20836 1.03873 0.94436 0.96878 1.20219 1.07860 0.98825 0.93139 1.20745 0.95511 0.96422 0.94348 1.21818 0.94778 1.01327 1.01566 1.21890 1.01709 1.00013 0.95979 1.21902 1.01528 0.94561 1.01766 0.91880 0.90293 0.94639 0.77318 0.86970 0.88907 0.90816 0.88375 0.87737 0.93756 0.91327 0.93818 0.91407 0.91241 0.92846 0.93475 0.91359 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.71 71.98 0.63 -3.44 16 2 C 0.16 4.40 1.54 44.99 0.07 4.47 16 3 H 0.05 1.65 6.44 -2.38 -0.02 1.64 16 4 N -0.74 -24.35 4.44 -318.53 -1.42 -25.76 16 5 C 0.12 5.23 6.65 38.67 0.26 5.48 16 6 C -0.17 -7.55 8.75 22.15 0.19 -7.35 16 7 C -0.20 -10.16 9.74 22.47 0.22 -9.94 16 8 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 9 C -0.51 -29.22 9.03 23.38 0.21 -29.00 16 10 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 11 C 0.03 1.75 5.13 85.23 0.44 2.19 16 12 N -0.84 -46.92 10.98 21.82 0.24 -46.68 16 13 Si 0.98 40.84 29.59 68.60 2.03 42.87 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 15 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 17 C -0.14 -7.71 8.63 22.48 0.19 -7.52 16 18 C -0.18 -8.48 9.82 22.15 0.22 -8.26 16 19 C -0.07 -1.42 0.59 -52.18 -0.03 -1.45 16 20 C -0.14 -3.04 8.32 71.98 0.60 -2.44 16 21 C -0.14 -2.26 8.12 71.98 0.58 -1.68 16 22 C -0.14 -2.52 7.95 71.98 0.57 -1.95 16 23 H 0.06 1.45 6.43 -2.39 -0.02 1.43 16 24 H 0.08 1.55 6.43 -2.39 -0.02 1.54 16 25 H 0.03 1.05 7.69 -2.39 -0.02 1.03 16 26 H 0.39 11.73 6.65 -92.71 -0.62 11.11 16 27 H 0.11 4.46 6.06 -2.91 -0.02 4.44 16 28 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 29 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 30 H 0.10 5.68 6.18 -2.91 -0.02 5.66 16 31 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.10 7.45 -2.39 -0.02 1.09 16 35 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.92 6.51 -2.39 -0.02 0.91 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.10 6.43 -2.38 -0.02 1.08 16 Total: -1.00 -61.87 310.60 5.29 -56.58 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.40 Total: 32.10 kcal Atomic # 6 Polarization: -63.14 SS G_CDS: 4.03 Total: -59.10 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.18 Total: -72.45 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -61.87 5.29 -56.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309813350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.749 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds