Wall clock time and date at job start Mon Mar 30 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47460 * 181.90857 * 3 2 1 5 5 H 1.09010 * 109.46448 * 305.61712 * 4 3 2 6 6 N 1.46893 * 109.47017 * 65.61052 * 4 3 2 7 7 C 1.46903 * 111.00126 * 205.46240 * 6 4 3 8 8 H 1.08999 * 109.47114 * 326.71960 * 7 6 4 9 9 C 1.52993 * 109.47187 * 86.72396 * 7 6 4 10 10 C 1.50708 * 109.47014 * 206.72463 * 7 6 4 11 11 H 1.07996 * 119.99695 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99576 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00368 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99603 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.46921 * 90.00324 * 14 12 10 16 16 H 1.48495 * 109.46968 * 209.99990 * 14 12 10 17 17 H 1.48497 * 109.47003 * 330.00372 * 14 12 10 18 18 C 1.50699 * 109.47548 * 185.61808 * 4 3 2 19 19 C 1.38233 * 119.99561 * 279.72467 * 18 4 3 20 20 C 1.38235 * 119.99970 * 179.80976 * 19 18 4 21 21 C 1.38238 * 119.99582 * 0.39472 * 20 19 18 22 22 C 1.38229 * 120.00074 * 359.86178 * 21 20 19 23 23 C 1.38227 * 120.00105 * 359.95016 * 22 21 20 24 24 H 1.09003 * 109.46783 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46980 * 299.99623 * 1 2 3 26 26 H 1.08996 * 109.46930 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46600 * 239.99570 * 2 1 3 28 28 H 1.08999 * 109.46813 * 120.00358 * 2 1 3 29 29 H 1.09005 * 109.47438 * 61.90393 * 3 2 1 30 30 H 1.09004 * 109.46952 * 301.90549 * 3 2 1 31 31 H 1.00904 * 111.00602 * 329.41747 * 6 4 3 32 32 H 1.09005 * 109.47157 * 65.55144 * 9 7 6 33 33 H 1.09003 * 109.47317 * 185.55169 * 9 7 6 34 34 H 1.09000 * 109.47288 * 305.54821 * 9 7 6 35 35 H 0.96994 * 120.00169 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.00358 * 359.97438 * 19 18 4 37 37 H 1.08001 * 120.00443 * 180.23190 * 20 19 18 38 38 H 1.08006 * 119.99390 * 179.83584 * 21 20 19 39 39 H 1.08000 * 119.99956 * 179.97438 * 22 21 20 40 40 H 1.08011 * 120.00100 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5693 1.4428 -0.0480 5 1 3.9585 0.8350 0.7690 6 7 4.0190 0.8850 -1.3304 7 6 5.3664 0.3120 -1.2117 8 1 5.9447 0.8896 -0.4906 9 6 5.2636 -1.1391 -0.7379 10 6 6.0506 0.3549 -2.5539 11 1 5.5357 0.7663 -3.4094 12 6 7.3338 -0.1311 -2.6894 13 7 7.9605 -0.6325 -1.6475 14 14 8.1815 -0.0786 -4.3532 15 1 8.9182 1.2032 -4.4931 16 1 9.1354 -1.2117 -4.4586 17 1 7.1649 -0.1853 -5.4303 18 6 4.0761 2.8552 0.0909 19 6 4.0812 3.6984 -1.0044 20 6 4.5424 4.9953 -0.8762 21 6 5.0059 5.4463 0.3456 22 6 5.0057 4.6013 1.4396 23 6 4.5409 3.3058 1.3122 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7049 1.9464 0.9066 30 1 1.6491 1.9660 -0.8724 31 1 3.3640 0.2000 -1.6765 32 1 4.7714 -1.7377 -1.5045 33 1 6.2632 -1.5334 -0.5552 34 1 4.6829 -1.1801 0.1836 35 1 8.8633 -0.9741 -1.7428 36 1 3.7225 3.3449 -1.9599 37 1 4.5430 5.6553 -1.7310 38 1 5.3687 6.4587 0.4451 39 1 5.3682 4.9536 2.3940 40 1 4.5403 2.6457 2.1672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:24 Heat of formation + Delta-G solvation = 6.041044 kcal Electronic energy + Delta-G solvation = -18229.215004 eV Core-core repulsion = 15621.911528 eV Total energy + Delta-G solvation = -2607.303477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.06991 -36.74242 -34.25315 -32.39956 -30.90685 -30.36535 -28.46722 -26.49908 -25.05700 -23.48852 -22.04858 -21.04419 -20.44926 -19.51576 -16.42398 -16.14334 -15.38591 -14.83439 -14.62005 -14.51461 -14.14976 -13.39920 -13.22966 -12.90232 -12.83029 -12.28264 -12.05626 -12.05228 -11.87425 -11.46154 -11.15585 -10.96268 -10.89156 -10.77833 -10.55951 -10.53476 -10.27991 -10.15304 -10.01950 -9.79618 -8.93649 -8.39815 -8.31749 -8.14520 -7.22839 -5.93676 -3.95756 1.86683 1.94838 3.35425 3.41435 3.45129 4.29822 4.47844 4.95862 5.14002 5.25686 5.29442 5.37953 5.38668 5.46243 5.51057 5.64809 5.79351 5.89104 5.91140 5.98844 6.06079 6.12977 6.21150 6.28253 6.45224 6.49241 6.58049 6.62368 6.72600 6.87158 6.93567 7.02316 7.14260 7.21891 7.47322 7.54373 7.76780 7.93980 8.32850 8.60426 8.66690 9.10864 9.69039 11.13940 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.008059 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.659578 B = 3473.545216 C = 4674.066335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.113 4.113 4 C 0.122 3.878 5 H 0.043 0.957 6 N -0.677 5.677 7 C 0.214 3.786 8 H 0.033 0.967 9 C -0.166 4.166 10 C -0.491 4.491 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.057 4.057 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.121 4.121 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.328 0.672 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.003 0.997 35 H 0.258 0.742 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 5.960 5.125 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.011 3.989 5 H 0.061 0.939 6 N -0.308 5.308 7 C 0.106 3.894 8 H 0.051 0.949 9 C -0.225 4.225 10 C -0.530 4.530 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.057 4.057 19 C -0.094 4.094 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.256 6.466 4.919 13.084 hybrid contribution 0.620 -0.869 -0.301 1.109 sum -9.636 5.597 4.617 12.063 Atomic orbital electron populations 1.21746 0.96106 1.01210 1.01508 1.21591 0.95495 0.97210 1.02293 1.21748 0.94743 0.96528 1.02102 1.20382 0.93052 0.91749 0.93669 0.93868 1.60814 1.05702 1.40483 1.23834 1.19165 0.83929 0.89334 0.96952 0.94913 1.22415 1.02486 1.01398 0.96204 1.21137 0.98443 1.38446 0.94986 0.92052 1.24937 0.97385 0.95607 0.96576 1.69895 1.12778 1.41964 1.29141 0.86553 0.79319 0.77394 0.84437 1.20842 1.21491 1.19982 1.19923 0.97328 0.95587 0.92909 1.21044 0.97368 0.92135 0.98895 1.21139 1.00163 0.96433 0.97089 1.20995 1.01258 0.99303 0.93496 1.20942 1.01197 0.94250 0.98382 1.20988 0.99825 0.95837 0.97332 0.93067 0.93117 0.92762 0.91464 0.92309 0.92127 0.91245 0.85327 0.95190 0.89714 0.97750 0.93195 0.85203 0.86787 0.87053 0.86943 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.13 -1.68 5.80 -26.73 -0.16 -1.84 16 3 C -0.11 -1.61 4.77 -26.74 -0.13 -1.74 16 4 C 0.12 2.16 2.04 -68.87 -0.14 2.02 16 5 H 0.04 0.82 7.09 -51.92 -0.37 0.45 16 6 N -0.68 -13.89 5.28 -102.17 -0.54 -14.43 16 7 C 0.21 5.34 2.37 -68.86 -0.16 5.18 16 8 H 0.03 0.93 7.64 -51.93 -0.40 0.53 16 9 C -0.17 -3.97 8.85 37.15 0.33 -3.65 16 10 C -0.49 -13.62 8.84 -34.44 -0.30 -13.93 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 13 N -0.90 -26.07 11.38 55.43 0.63 -25.44 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.06 -1.02 4.64 -104.63 -0.49 -1.51 16 19 C -0.08 -1.36 9.33 -39.58 -0.37 -1.73 16 20 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 21 C -0.13 -1.99 10.05 -39.58 -0.40 -2.38 16 22 C -0.13 -1.98 10.05 -39.59 -0.40 -2.37 16 23 C -0.12 -2.03 9.67 -39.59 -0.38 -2.41 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.95 6.40 -51.93 -0.33 0.62 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.33 6.36 6.21 -39.29 -0.24 6.12 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 2.27 6.24 -51.93 -0.32 1.94 16 34 H 0.00 0.08 7.52 -51.93 -0.39 -0.31 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.13 2.37 7.71 -52.48 -0.40 1.97 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -28.91 323.31 -9.43 -38.34 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.65 Total: 6.48 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.72 Total: -26.63 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.09 Total: -39.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.91 -9.43 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.383 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds