Wall clock time and date at job start Mon Mar 30 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47460 * 181.90857 * 3 2 1 5 5 H 1.09010 * 109.46448 * 305.61712 * 4 3 2 6 6 N 1.46893 * 109.47017 * 65.61052 * 4 3 2 7 7 C 1.46903 * 111.00126 * 205.46240 * 6 4 3 8 8 H 1.08999 * 109.47114 * 326.71960 * 7 6 4 9 9 C 1.52993 * 109.47187 * 86.72396 * 7 6 4 10 10 C 1.50708 * 109.47014 * 206.72463 * 7 6 4 11 11 H 1.07996 * 119.99695 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99576 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00368 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99603 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.46921 * 90.00324 * 14 12 10 16 16 H 1.48495 * 109.46968 * 209.99990 * 14 12 10 17 17 H 1.48497 * 109.47003 * 330.00372 * 14 12 10 18 18 C 1.50699 * 109.47548 * 185.61808 * 4 3 2 19 19 C 1.38233 * 119.99561 * 279.72467 * 18 4 3 20 20 C 1.38235 * 119.99970 * 179.80976 * 19 18 4 21 21 C 1.38238 * 119.99582 * 0.39472 * 20 19 18 22 22 C 1.38229 * 120.00074 * 359.86178 * 21 20 19 23 23 C 1.38227 * 120.00105 * 359.95016 * 22 21 20 24 24 H 1.09003 * 109.46783 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46980 * 299.99623 * 1 2 3 26 26 H 1.08996 * 109.46930 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46600 * 239.99570 * 2 1 3 28 28 H 1.08999 * 109.46813 * 120.00358 * 2 1 3 29 29 H 1.09005 * 109.47438 * 61.90393 * 3 2 1 30 30 H 1.09004 * 109.46952 * 301.90549 * 3 2 1 31 31 H 1.00904 * 111.00602 * 329.41747 * 6 4 3 32 32 H 1.09005 * 109.47157 * 65.55144 * 9 7 6 33 33 H 1.09003 * 109.47317 * 185.55169 * 9 7 6 34 34 H 1.09000 * 109.47288 * 305.54821 * 9 7 6 35 35 H 0.96994 * 120.00169 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.00358 * 359.97438 * 19 18 4 37 37 H 1.08001 * 120.00443 * 180.23190 * 20 19 18 38 38 H 1.08006 * 119.99390 * 179.83584 * 21 20 19 39 39 H 1.08000 * 119.99956 * 179.97438 * 22 21 20 40 40 H 1.08011 * 120.00100 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5693 1.4428 -0.0480 5 1 3.9585 0.8350 0.7690 6 7 4.0190 0.8850 -1.3304 7 6 5.3664 0.3120 -1.2117 8 1 5.9447 0.8896 -0.4906 9 6 5.2636 -1.1391 -0.7379 10 6 6.0506 0.3549 -2.5539 11 1 5.5357 0.7663 -3.4094 12 6 7.3338 -0.1311 -2.6894 13 7 7.9605 -0.6325 -1.6475 14 14 8.1815 -0.0786 -4.3532 15 1 8.9182 1.2032 -4.4931 16 1 9.1354 -1.2117 -4.4586 17 1 7.1649 -0.1853 -5.4303 18 6 4.0761 2.8552 0.0909 19 6 4.0812 3.6984 -1.0044 20 6 4.5424 4.9953 -0.8762 21 6 5.0059 5.4463 0.3456 22 6 5.0057 4.6013 1.4396 23 6 4.5409 3.3058 1.3122 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7049 1.9464 0.9066 30 1 1.6491 1.9660 -0.8724 31 1 3.3640 0.2000 -1.6765 32 1 4.7714 -1.7377 -1.5045 33 1 6.2632 -1.5334 -0.5552 34 1 4.6829 -1.1801 0.1836 35 1 8.8633 -0.9741 -1.7428 36 1 3.7225 3.3449 -1.9599 37 1 4.5430 5.6553 -1.7310 38 1 5.3687 6.4587 0.4451 39 1 5.3682 4.9536 2.3940 40 1 4.5403 2.6457 2.1672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:23 Heat of formation + Delta-G solvation = -8.817754 kcal Electronic energy + Delta-G solvation = -18229.859330 eV Core-core repulsion = 15621.911528 eV Total energy + Delta-G solvation = -2607.947803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39517 -38.19882 -35.89246 -33.99731 -32.50623 -31.63218 -29.93444 -27.97581 -27.18030 -24.72375 -23.31793 -22.35804 -22.12797 -20.95008 -18.35784 -17.51683 -16.94124 -16.51930 -15.98565 -15.92657 -15.49163 -14.83447 -14.64998 -14.42895 -14.09438 -13.74179 -13.60801 -13.45636 -13.24206 -13.03859 -12.83798 -12.67811 -12.36402 -12.27086 -12.15563 -11.99460 -11.75819 -11.73579 -11.46794 -11.35466 -10.96735 -10.47422 -9.66757 -9.43773 -8.94378 -8.07980 -6.17709 0.59812 0.67451 1.41549 1.42159 1.52671 2.44210 3.02322 3.20976 3.58918 3.91540 4.12284 4.13777 4.19793 4.28204 4.36655 4.43028 4.58345 4.73665 4.77624 4.80015 4.83748 4.85821 4.89490 4.97378 5.08091 5.15065 5.25123 5.30636 5.32041 5.35244 5.46786 5.49594 5.68316 5.71665 5.75214 5.80455 5.97841 6.27436 6.31815 6.70232 6.89405 6.99314 7.51908 8.98076 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.008059 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.659578 B = 3473.545216 C = 4674.066335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C -0.102 4.102 4 C 0.125 3.875 5 H 0.028 0.972 6 N -0.675 5.675 7 C 0.225 3.775 8 H -0.006 1.006 9 C -0.152 4.152 10 C -0.508 4.508 11 H 0.054 0.946 12 C 0.008 3.992 13 N -0.924 5.924 14 Si 0.956 3.044 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.079 4.079 19 C -0.100 4.100 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.334 0.666 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 6.961 5.163 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.140 4.140 4 C 0.014 3.986 5 H 0.046 0.954 6 N -0.307 5.307 7 C 0.116 3.884 8 H 0.012 0.988 9 C -0.211 4.211 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.782 3.218 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.080 4.080 19 C -0.118 4.118 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.157 4.157 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.002 7.470 4.956 14.192 hybrid contribution 0.842 -1.121 -0.259 1.426 sum -10.161 6.349 4.697 12.869 Atomic orbital electron populations 1.21702 0.94011 1.02102 1.02228 1.21571 0.97314 0.96068 1.01503 1.21662 0.92006 0.97555 1.02742 1.20418 0.95341 0.91399 0.91394 0.95448 1.60657 1.04047 1.40086 1.25873 1.18826 0.85544 0.89308 0.94694 0.98806 1.22213 1.01086 1.00624 0.97220 1.21447 0.99040 1.38364 0.95865 0.92757 1.25697 0.98077 0.95301 0.99929 1.70029 1.12980 1.42534 1.30930 0.85583 0.78309 0.77368 0.80507 1.20633 1.20969 1.19203 1.20054 0.98494 0.95654 0.93763 1.21074 0.98928 0.93388 0.98400 1.21438 0.99568 0.95945 0.98516 1.21398 1.00174 1.00732 0.92772 1.21333 1.00061 0.93556 0.99859 1.21220 1.00223 0.97014 0.97208 0.92129 0.92067 0.92375 0.92744 0.92594 0.90771 0.91208 0.84638 0.94911 0.92546 0.95668 0.93208 0.86519 0.84787 0.83860 0.84082 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.91 71.99 0.71 -2.12 16 2 C -0.13 -3.20 5.80 30.59 0.18 -3.02 16 3 C -0.10 -2.83 4.77 30.59 0.15 -2.69 16 4 C 0.12 4.47 2.04 44.17 0.09 4.56 16 5 H 0.03 1.07 7.09 -2.38 -0.02 1.05 16 6 N -0.67 -28.23 5.28 -477.16 -2.52 -30.75 16 7 C 0.22 11.53 2.37 44.17 0.10 11.63 16 8 H -0.01 -0.35 7.64 -2.39 -0.02 -0.37 16 9 C -0.15 -7.41 8.85 71.98 0.64 -6.78 16 10 C -0.51 -28.66 8.84 25.60 0.23 -28.44 16 11 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 12 C 0.01 0.44 5.30 84.66 0.45 0.89 16 13 N -0.92 -54.56 11.38 21.45 0.24 -54.31 16 14 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 C -0.08 -2.86 4.64 -19.87 -0.09 -2.96 16 19 C -0.10 -3.58 9.33 22.27 0.21 -3.38 16 20 C -0.14 -4.23 10.05 22.27 0.22 -4.00 16 21 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 22 C -0.13 -3.72 10.05 22.26 0.22 -3.50 16 23 C -0.14 -4.55 9.67 22.27 0.22 -4.34 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.51 6.40 -2.39 -0.02 1.49 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.33 13.10 6.21 -89.69 -0.56 12.54 16 32 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 3.08 6.24 -2.39 -0.01 3.07 16 34 H 0.02 1.07 7.52 -2.39 -0.02 1.06 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.12 4.38 7.71 -2.91 -0.02 4.36 16 37 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.12 3.64 8.04 -2.91 -0.02 3.61 16 Total: -1.00 -62.38 323.31 3.73 -58.64 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.44 Total: 27.05 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 3.55 Total: -47.60 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.27 Total: -85.06 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.38 3.73 -58.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.826 kcal (2) G-P(sol) polarization free energy of solvation -62.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds