Wall clock time and date at job start Mon Mar 30 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 C 1.53007 * 109.47006 * 175.61609 * 3 2 1 5 5 H 1.08994 * 109.46802 * 55.95138 * 4 3 2 6 6 N 1.46900 * 109.46746 * 295.95054 * 4 3 2 7 7 C 1.46900 * 110.99565 * 151.72035 * 6 4 3 8 8 H 1.08998 * 109.47281 * 328.12161 * 7 6 4 9 9 C 1.53001 * 109.47436 * 88.12955 * 7 6 4 10 10 C 1.50706 * 109.46910 * 208.12898 * 7 6 4 11 11 H 1.07997 * 119.99374 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99937 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00119 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99850 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47044 * 90.00512 * 14 12 10 16 16 H 1.48505 * 109.47135 * 210.00128 * 14 12 10 17 17 H 1.48495 * 109.47140 * 330.00214 * 14 12 10 18 18 C 1.50702 * 109.46728 * 175.95145 * 4 3 2 19 19 C 1.38233 * 120.00059 * 79.72990 * 18 4 3 20 20 C 1.38234 * 119.99978 * 179.80633 * 19 18 4 21 21 C 1.38237 * 119.99885 * 0.39795 * 20 19 18 22 22 C 1.38233 * 120.00067 * 359.85485 * 21 20 19 23 23 C 1.38231 * 119.99861 * 259.99671 * 18 4 3 24 24 H 1.09008 * 109.46985 * 60.00089 * 1 2 3 25 25 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47339 * 300.00552 * 1 2 3 27 27 H 1.09001 * 109.47554 * 239.99719 * 2 1 3 28 28 H 1.09004 * 109.47004 * 119.99415 * 2 1 3 29 29 H 1.09000 * 109.46954 * 55.61378 * 3 2 1 30 30 H 1.09001 * 109.46813 * 295.61278 * 3 2 1 31 31 H 1.00907 * 110.99899 * 275.66422 * 6 4 3 32 32 H 1.09002 * 109.46812 * 179.97438 * 9 7 6 33 33 H 1.08993 * 109.47278 * 59.99783 * 9 7 6 34 34 H 1.09007 * 109.46645 * 299.99390 * 9 7 6 35 35 H 0.97004 * 120.00007 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00133 * 359.97438 * 19 18 4 37 37 H 1.08000 * 120.00423 * 180.22283 * 20 19 18 38 38 H 1.07999 * 120.00209 * 179.83466 * 21 20 19 39 39 H 1.08003 * 120.00350 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99993 * 359.97438 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5661 1.4439 0.1103 5 1 3.9892 0.8474 -0.6979 6 7 3.9641 0.8702 1.4027 7 6 5.2886 0.2412 1.3139 8 1 5.4323 -0.1634 0.3120 9 6 6.3694 1.2851 1.6022 10 6 5.3843 -0.8731 2.3240 11 1 4.5452 -1.0917 2.9678 12 6 6.5430 -1.6133 2.4262 13 7 7.5649 -1.3466 1.6425 14 14 6.6618 -2.9941 3.6788 15 1 6.2000 -4.2634 3.0616 16 1 8.0721 -3.1425 4.1197 17 1 5.8079 -2.6740 4.8508 18 6 4.0756 2.8587 0.0103 19 6 4.0244 3.6912 1.1126 20 6 4.4954 4.9877 1.0221 21 6 5.0101 5.4541 -0.1731 22 6 5.0565 4.6232 -1.2769 23 6 4.5890 3.3255 -1.1852 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6139 1.9785 0.8481 30 1 1.7422 1.9331 -0.9267 31 1 3.9438 1.5692 2.1302 32 1 7.3521 0.8182 1.5367 33 1 6.2257 1.6896 2.6041 34 1 6.3002 2.0910 0.8715 35 1 8.3803 -1.8672 1.7147 36 1 3.6188 3.3279 2.0454 37 1 4.4587 5.6371 1.8842 38 1 5.3756 6.4678 -0.2447 39 1 5.4582 4.9877 -2.2108 40 1 4.6254 2.6762 -2.0475 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:26 Heat of formation + Delta-G solvation = 7.680684 kcal Electronic energy + Delta-G solvation = -18267.411882 eV Core-core repulsion = 15660.179505 eV Total energy + Delta-G solvation = -2607.232377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38392 -36.51953 -34.24132 -32.48064 -30.85694 -30.53283 -28.52788 -26.46053 -25.04687 -23.38814 -22.37867 -20.92427 -20.21062 -19.77166 -16.85553 -16.11619 -15.24663 -15.01526 -14.59721 -14.37860 -14.03827 -13.48381 -13.22599 -13.00542 -12.89178 -12.46229 -12.16557 -11.97749 -11.63192 -11.26609 -11.11497 -10.96173 -10.89343 -10.76379 -10.57588 -10.46638 -10.22871 -10.10361 -10.00480 -9.80200 -8.97958 -8.64434 -8.32801 -8.28749 -7.23142 -5.93793 -3.97102 1.66405 1.67672 3.34852 3.41029 3.45047 4.07992 4.47071 5.01432 5.10537 5.20696 5.26249 5.35522 5.37670 5.49700 5.55661 5.61345 5.81258 5.82774 5.85623 6.07002 6.18409 6.22881 6.26847 6.33498 6.39019 6.50180 6.71297 6.73901 6.75448 6.81248 6.90740 6.98608 7.02021 7.19085 7.28948 7.43388 7.81007 7.93747 8.33254 8.57603 8.65995 9.10092 9.67996 11.12785 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.007369 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.678635 B = 3798.845725 C = 4960.192104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.095 4.095 4 C 0.120 3.880 5 H 0.078 0.922 6 N -0.671 5.671 7 C 0.214 3.786 8 H 0.031 0.969 9 C -0.166 4.166 10 C -0.493 4.493 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.086 4.086 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.118 4.118 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.326 0.674 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.011 0.989 35 H 0.258 0.742 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 9.902 -4.489 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.133 4.133 4 C 0.009 3.991 5 H 0.097 0.903 6 N -0.300 5.300 7 C 0.106 3.894 8 H 0.049 0.951 9 C -0.225 4.225 10 C -0.532 4.532 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.087 4.087 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.137 4.137 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.370 9.208 -4.602 13.267 hybrid contribution 0.964 0.138 0.590 1.139 sum -7.406 9.346 -4.012 12.582 Atomic orbital electron populations 1.21782 0.97149 1.00879 1.00842 1.21435 0.93990 0.96869 1.03333 1.21529 0.94285 0.97073 1.00446 1.20760 0.94751 0.88414 0.95168 0.90337 1.61006 1.32757 1.33373 1.02872 1.19220 0.81395 0.91494 0.97290 0.95135 1.22426 1.05356 0.97669 0.97070 1.21178 0.98945 1.14335 1.18760 0.92010 1.24943 0.95793 0.97583 0.96217 1.69897 1.04219 1.40517 1.39076 0.86546 0.76928 0.82467 0.81704 1.20821 1.21506 1.19988 1.20923 0.96851 0.97643 0.93331 1.20948 1.00128 0.93642 0.98453 1.21055 0.99183 0.95946 0.97501 1.21018 1.01254 0.99495 0.93501 1.21068 1.00190 0.94266 0.98381 1.21057 0.99354 0.95681 0.97561 0.93719 0.93286 0.93171 0.92898 0.89620 0.92436 0.93097 0.85511 0.89703 0.95733 0.97047 0.93179 0.86136 0.86585 0.86775 0.86669 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.80 5.87 -26.73 -0.16 -1.96 16 3 C -0.10 -1.43 4.87 -26.73 -0.13 -1.56 16 4 C 0.12 2.11 2.24 -68.86 -0.15 1.95 16 5 H 0.08 1.49 7.19 -51.93 -0.37 1.12 16 6 N -0.67 -13.73 5.38 -102.16 -0.55 -14.28 16 7 C 0.21 5.30 2.59 -68.86 -0.18 5.12 16 8 H 0.03 0.84 7.33 -51.93 -0.38 0.46 16 9 C -0.17 -4.05 8.73 37.16 0.32 -3.73 16 10 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 13 N -0.90 -25.88 11.32 55.43 0.63 -25.25 16 14 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.09 -1.41 3.20 -104.63 -0.33 -1.74 16 19 C -0.11 -1.77 8.86 -39.58 -0.35 -2.12 16 20 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 23 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 24 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.52 7.60 -51.93 -0.39 1.12 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.33 6.45 5.98 -39.29 -0.23 6.21 16 32 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 33 H 0.02 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.01 0.24 6.40 -51.92 -0.33 -0.09 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.12 1.82 6.55 -52.49 -0.34 1.48 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -28.46 320.22 -9.27 -37.73 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.57 Total: 6.89 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.59 Total: -26.54 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.08 Total: -39.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.46 -9.27 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.414 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds