Wall clock time and date at job start Mon Mar 30 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 C 1.53007 * 109.47006 * 175.61609 * 3 2 1 5 5 H 1.08994 * 109.46802 * 55.95138 * 4 3 2 6 6 N 1.46900 * 109.46746 * 295.95054 * 4 3 2 7 7 C 1.46900 * 110.99565 * 151.72035 * 6 4 3 8 8 H 1.08998 * 109.47281 * 328.12161 * 7 6 4 9 9 C 1.53001 * 109.47436 * 88.12955 * 7 6 4 10 10 C 1.50706 * 109.46910 * 208.12898 * 7 6 4 11 11 H 1.07997 * 119.99374 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99937 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00119 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99850 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47044 * 90.00512 * 14 12 10 16 16 H 1.48505 * 109.47135 * 210.00128 * 14 12 10 17 17 H 1.48495 * 109.47140 * 330.00214 * 14 12 10 18 18 C 1.50702 * 109.46728 * 175.95145 * 4 3 2 19 19 C 1.38233 * 120.00059 * 79.72990 * 18 4 3 20 20 C 1.38234 * 119.99978 * 179.80633 * 19 18 4 21 21 C 1.38237 * 119.99885 * 0.39795 * 20 19 18 22 22 C 1.38233 * 120.00067 * 359.85485 * 21 20 19 23 23 C 1.38231 * 119.99861 * 259.99671 * 18 4 3 24 24 H 1.09008 * 109.46985 * 60.00089 * 1 2 3 25 25 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47339 * 300.00552 * 1 2 3 27 27 H 1.09001 * 109.47554 * 239.99719 * 2 1 3 28 28 H 1.09004 * 109.47004 * 119.99415 * 2 1 3 29 29 H 1.09000 * 109.46954 * 55.61378 * 3 2 1 30 30 H 1.09001 * 109.46813 * 295.61278 * 3 2 1 31 31 H 1.00907 * 110.99899 * 275.66422 * 6 4 3 32 32 H 1.09002 * 109.46812 * 179.97438 * 9 7 6 33 33 H 1.08993 * 109.47278 * 59.99783 * 9 7 6 34 34 H 1.09007 * 109.46645 * 299.99390 * 9 7 6 35 35 H 0.97004 * 120.00007 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00133 * 359.97438 * 19 18 4 37 37 H 1.08000 * 120.00423 * 180.22283 * 20 19 18 38 38 H 1.07999 * 120.00209 * 179.83466 * 21 20 19 39 39 H 1.08003 * 120.00350 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99993 * 359.97438 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5661 1.4439 0.1103 5 1 3.9892 0.8474 -0.6979 6 7 3.9641 0.8702 1.4027 7 6 5.2886 0.2412 1.3139 8 1 5.4323 -0.1634 0.3120 9 6 6.3694 1.2851 1.6022 10 6 5.3843 -0.8731 2.3240 11 1 4.5452 -1.0917 2.9678 12 6 6.5430 -1.6133 2.4262 13 7 7.5649 -1.3466 1.6425 14 14 6.6618 -2.9941 3.6788 15 1 6.2000 -4.2634 3.0616 16 1 8.0721 -3.1425 4.1197 17 1 5.8079 -2.6740 4.8508 18 6 4.0756 2.8587 0.0103 19 6 4.0244 3.6912 1.1126 20 6 4.4954 4.9877 1.0221 21 6 5.0101 5.4541 -0.1731 22 6 5.0565 4.6232 -1.2769 23 6 4.5890 3.3255 -1.1852 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6139 1.9785 0.8481 30 1 1.7422 1.9331 -0.9267 31 1 3.9438 1.5692 2.1302 32 1 7.3521 0.8182 1.5367 33 1 6.2257 1.6896 2.6041 34 1 6.3002 2.0910 0.8715 35 1 8.3803 -1.8672 1.7147 36 1 3.6188 3.3279 2.0454 37 1 4.4587 5.6371 1.8842 38 1 5.3756 6.4678 -0.2447 39 1 5.4582 4.9877 -2.2108 40 1 4.6254 2.6762 -2.0475 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:26 Heat of formation + Delta-G solvation = -6.896391 kcal Electronic energy + Delta-G solvation = -18268.043991 eV Core-core repulsion = 15660.179505 eV Total energy + Delta-G solvation = -2607.864486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62899 -37.96847 -35.89502 -34.13559 -32.35383 -31.73519 -29.96064 -27.97593 -27.17806 -24.61548 -23.59636 -22.18027 -21.98108 -21.15677 -18.42322 -17.79307 -16.88439 -16.33085 -16.17578 -15.58209 -15.49580 -14.79041 -14.75040 -14.37861 -14.18893 -13.84508 -13.69142 -13.50795 -13.18488 -12.87028 -12.81265 -12.57082 -12.39937 -12.25347 -12.12071 -11.96813 -11.83078 -11.67295 -11.45581 -11.33654 -10.98331 -10.46367 -9.77125 -9.51713 -8.92580 -8.07025 -6.18346 0.52222 0.54885 1.42809 1.43122 1.53957 2.44756 2.94394 3.20664 3.66346 3.77908 4.03936 4.17570 4.27982 4.30466 4.38046 4.45120 4.54334 4.70083 4.74506 4.79741 4.87602 4.94078 5.00022 5.05415 5.13503 5.16099 5.19934 5.21623 5.36962 5.43430 5.51505 5.62407 5.64944 5.69393 5.71627 5.73755 5.89340 6.17880 6.31373 6.69301 6.86611 6.97828 7.51595 8.97870 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.007369 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.678635 B = 3798.845725 C = 4960.192104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.085 4.085 4 C 0.123 3.877 5 H 0.055 0.945 6 N -0.669 5.669 7 C 0.224 3.776 8 H -0.004 1.004 9 C -0.146 4.146 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.008 3.992 13 N -0.924 5.924 14 Si 0.958 3.042 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.269 1.269 18 C -0.104 4.104 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.331 0.669 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.259 0.741 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 11.301 -4.295 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.123 4.123 4 C 0.013 3.987 5 H 0.073 0.927 6 N -0.299 5.299 7 C 0.115 3.885 8 H 0.014 0.986 9 C -0.206 4.206 10 C -0.550 4.550 11 H 0.073 0.927 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.784 3.216 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.106 4.106 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.154 4.154 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.140 10.619 -4.412 14.689 hybrid contribution 1.196 -0.227 0.471 1.305 sum -7.944 10.391 -3.941 13.661 Atomic orbital electron populations 1.21717 0.94727 1.01647 1.01879 1.21386 0.96125 0.96561 1.01474 1.21454 0.92252 0.97125 1.01479 1.20702 0.96343 0.89045 0.92654 0.92681 1.60880 1.30079 1.34255 1.04722 1.18902 0.83614 0.91385 0.94569 0.98647 1.22187 1.03415 0.97566 0.97430 1.21489 0.98858 1.15461 1.19231 0.92668 1.25710 0.95475 0.99838 0.97986 1.70030 1.04598 1.41441 1.40346 0.85555 0.77004 0.79531 0.79497 1.20387 1.21066 1.19314 1.20792 0.98412 0.96947 0.94442 1.21049 1.00975 0.94554 0.98102 1.21388 0.98339 0.95485 0.98799 1.21433 1.00029 1.00800 0.92831 1.21406 0.99355 0.93506 0.99812 1.21235 0.99926 0.96853 0.97405 0.92128 0.92726 0.92624 0.93624 0.92647 0.91879 0.91385 0.84969 0.92669 0.95570 0.95769 0.93170 0.86272 0.84201 0.83702 0.84135 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.58 5.87 30.59 0.18 -3.41 16 3 C -0.09 -2.52 4.87 30.60 0.15 -2.37 16 4 C 0.12 4.40 2.24 44.17 0.10 4.50 16 5 H 0.05 2.20 7.19 -2.39 -0.02 2.18 16 6 N -0.67 -28.10 5.38 -477.14 -2.56 -30.66 16 7 C 0.22 11.48 2.59 44.17 0.11 11.59 16 8 H 0.00 -0.25 7.33 -2.39 -0.02 -0.27 16 9 C -0.15 -7.29 8.73 71.98 0.63 -6.67 16 10 C -0.51 -28.79 8.84 25.60 0.23 -28.56 16 11 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 12 C 0.01 0.44 5.30 84.65 0.45 0.88 16 13 N -0.92 -54.35 11.32 21.45 0.24 -54.11 16 14 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 C -0.10 -3.39 3.20 -19.87 -0.06 -3.45 16 19 C -0.13 -3.87 8.86 22.27 0.20 -3.67 16 20 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 21 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 22 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 23 C -0.14 -4.07 9.67 22.27 0.22 -3.86 16 24 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 2.02 7.60 -2.39 -0.02 2.00 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.33 13.24 5.98 -89.69 -0.54 12.70 16 32 H 0.05 3.08 6.07 -2.39 -0.01 3.07 16 33 H 0.03 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.02 1.09 6.40 -2.38 -0.02 1.08 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.12 3.53 6.55 -2.91 -0.02 3.51 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.12 3.40 8.04 -2.91 -0.02 3.38 16 Total: -1.00 -61.56 320.22 3.74 -57.82 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.46 Total: 26.64 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 3.58 Total: -46.41 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -2.32 Total: -84.77 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.56 3.74 -57.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.919 kcal (2) G-P(sol) polarization free energy of solvation -61.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds