Wall clock time and date at job start Mon Mar 30 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53002 * 109.47150 * 184.93416 * 3 2 1 5 5 H 1.09000 * 109.47510 * 55.20765 * 4 3 2 6 6 N 1.46906 * 109.46699 * 295.21181 * 4 3 2 7 7 C 1.46899 * 110.99572 * 157.40259 * 6 4 3 8 8 H 1.08997 * 109.47498 * 34.01084 * 7 6 4 9 9 C 1.53000 * 109.47108 * 274.00787 * 7 6 4 10 10 C 1.50709 * 109.46794 * 154.00882 * 7 6 4 11 11 H 1.07998 * 119.99728 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99703 * 179.97438 * 10 7 6 13 13 N 1.31508 * 119.99927 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99770 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47141 * 90.00022 * 14 12 10 16 16 H 1.48503 * 109.47071 * 210.00487 * 14 12 10 17 17 H 1.48500 * 109.46913 * 330.00438 * 14 12 10 18 18 C 1.50696 * 109.47191 * 175.21576 * 4 3 2 19 19 C 1.38234 * 120.00121 * 79.72013 * 18 4 3 20 20 C 1.38242 * 119.99897 * 179.79025 * 19 18 4 21 21 C 1.38231 * 119.99740 * 0.44203 * 20 19 18 22 22 C 1.38239 * 120.00420 * 359.81420 * 21 20 19 23 23 C 1.38233 * 119.99660 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47065 * 300.00446 * 1 2 3 26 26 H 1.08997 * 109.46857 * 60.00158 * 1 2 3 27 27 H 1.09000 * 109.47489 * 239.99883 * 2 1 3 28 28 H 1.09005 * 109.47449 * 119.99701 * 2 1 3 29 29 H 1.08995 * 109.47338 * 64.92949 * 3 2 1 30 30 H 1.08998 * 109.46658 * 304.92721 * 3 2 1 31 31 H 1.00900 * 111.00005 * 281.35693 * 6 4 3 32 32 H 1.09000 * 109.47086 * 54.07242 * 9 7 6 33 33 H 1.09002 * 109.47129 * 174.07903 * 9 7 6 34 34 H 1.09001 * 109.46967 * 294.06963 * 9 7 6 35 35 H 0.97002 * 119.99459 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.00159 * 0.02562 * 19 18 4 37 37 H 1.08000 * 120.00028 * 180.27332 * 20 19 18 38 38 H 1.08004 * 119.99811 * 179.83653 * 21 20 19 39 39 H 1.07997 * 120.00423 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.99961 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1241 5 1 3.8581 0.8828 -1.0111 6 7 4.1539 0.8192 1.0678 7 6 5.5052 0.3170 0.7855 8 1 5.9956 0.9762 0.0692 9 6 5.4132 -1.0936 0.2003 10 6 6.3043 0.2799 2.0628 11 1 5.8532 0.5972 2.9913 12 6 7.6109 -0.1601 2.0460 13 7 8.1599 -0.5469 0.9153 14 14 8.6011 -0.2067 3.6292 15 1 8.4257 -1.5280 4.2840 16 1 10.0381 0.0062 3.3208 17 1 8.1266 0.8646 4.5415 18 6 4.0577 2.8635 -0.2423 19 6 4.1779 3.6499 0.8882 20 6 4.6341 4.9504 0.7803 21 6 4.9613 5.4673 -0.4593 22 6 4.8361 4.6827 -1.5905 23 6 4.3841 3.3808 -1.4820 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7506 1.9303 0.9308 30 1 1.6064 1.9811 -0.8426 31 1 4.1619 1.4611 1.8462 32 1 4.7492 -1.0858 -0.6641 33 1 6.4052 -1.4252 -0.1065 34 1 5.0197 -1.7749 0.9547 35 1 9.0793 -0.8561 0.9035 36 1 3.9191 3.2470 1.8562 37 1 4.7321 5.5634 1.6640 38 1 5.3152 6.4842 -0.5439 39 1 5.0922 5.0864 -2.5588 40 1 4.2859 2.7679 -2.3658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:29 Heat of formation + Delta-G solvation = 4.503434 kcal Electronic energy + Delta-G solvation = -18243.832338 eV Core-core repulsion = 15636.462186 eV Total energy + Delta-G solvation = -2607.370153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26937 -36.49964 -34.22016 -32.49605 -30.81146 -30.51611 -28.39481 -26.74043 -25.08823 -23.36866 -22.22529 -20.95067 -20.34081 -19.32020 -16.90114 -16.17335 -15.31745 -14.87819 -14.59844 -14.36584 -13.96986 -13.63348 -13.23360 -13.00122 -12.89541 -12.43215 -12.29145 -11.97857 -11.47867 -11.32993 -11.08711 -10.92063 -10.87238 -10.75322 -10.54855 -10.42211 -10.14632 -10.13252 -10.07759 -9.84793 -8.78019 -8.56713 -8.46896 -8.28399 -7.26091 -5.99675 -4.04994 1.73476 1.75737 3.30998 3.37315 3.40090 4.15266 4.42434 5.03955 5.14966 5.27190 5.28604 5.33707 5.41068 5.45676 5.55361 5.56131 5.82653 5.87046 5.89499 6.07393 6.15400 6.20240 6.27249 6.37169 6.41832 6.46783 6.68632 6.80151 6.82586 6.86240 6.92909 7.01497 7.17378 7.28722 7.36623 7.57212 7.81181 7.94450 8.28114 8.41530 8.70001 9.05255 9.60416 11.07179 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.008050 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.054575 B = 3477.505532 C = 4656.181573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.097 4.097 4 C 0.122 3.878 5 H 0.079 0.921 6 N -0.675 5.675 7 C 0.213 3.787 8 H 0.003 0.997 9 C -0.121 4.121 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.091 4.091 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.116 4.116 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.330 0.670 32 H 0.004 0.996 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 7.323 -3.563 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.135 4.135 4 C 0.010 3.990 5 H 0.097 0.903 6 N -0.306 5.306 7 C 0.105 3.895 8 H 0.021 0.979 9 C -0.179 4.179 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.093 4.093 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.023 0.977 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.201 6.610 -3.727 12.714 hybrid contribution 1.317 0.822 0.751 1.724 sum -8.885 7.432 -2.976 11.959 Atomic orbital electron populations 1.21802 0.97128 1.00897 1.00982 1.21398 0.93875 0.96911 1.03047 1.21535 0.94171 0.96889 1.00901 1.20705 0.93918 0.87970 0.96365 0.90329 1.60965 1.25895 1.39335 1.04408 1.19076 0.82475 0.92249 0.95661 0.97924 1.21701 1.00589 0.98845 0.96786 1.21243 0.96577 1.43702 0.94006 0.92428 1.24893 0.97628 0.95218 0.96139 1.69910 1.13798 1.43956 1.25145 0.86571 0.79220 0.78376 0.83657 1.20665 1.21332 1.19998 1.20928 0.97527 0.97711 0.93169 1.20951 0.99493 0.93799 0.98418 1.21060 0.99561 0.95778 0.97276 1.21018 1.01568 0.99574 0.92962 1.21053 1.00300 0.94516 0.98218 1.21041 0.99858 0.95403 0.97200 0.93279 0.93190 0.93531 0.92703 0.90351 0.92392 0.92920 0.85031 0.97689 0.90646 0.94962 0.93034 0.86106 0.86553 0.86783 0.86701 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.11 -1.66 5.76 -26.73 -0.15 -1.82 16 3 C -0.10 -1.44 4.87 -26.73 -0.13 -1.57 16 4 C 0.12 2.16 2.04 -68.86 -0.14 2.02 16 5 H 0.08 1.49 7.03 -51.93 -0.37 1.13 16 6 N -0.68 -13.98 5.56 -102.16 -0.57 -14.55 16 7 C 0.21 5.34 2.41 -68.86 -0.17 5.18 16 8 H 0.00 0.09 7.53 -51.93 -0.39 -0.31 16 9 C -0.12 -3.00 9.12 37.16 0.34 -2.66 16 10 C -0.52 -14.18 8.59 -34.43 -0.30 -14.48 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -25.69 11.39 55.43 0.63 -25.06 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.09 -1.59 4.48 -104.63 -0.47 -2.06 16 19 C -0.11 -1.82 9.14 -39.58 -0.36 -2.19 16 20 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 21 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 22 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 23 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.33 6.79 5.89 -39.29 -0.23 6.56 16 32 H 0.00 0.09 7.42 -51.93 -0.39 -0.29 16 33 H 0.07 2.04 6.25 -51.93 -0.32 1.72 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.12 1.97 6.52 -52.49 -0.34 1.63 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.72 8.04 -52.48 -0.42 1.30 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -28.69 322.88 -9.40 -38.10 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.63 Total: 6.49 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -2.68 Total: -26.33 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.06 Total: -39.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.69 -9.40 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.600 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds