Wall clock time and date at job start Mon Mar 30 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53002 * 109.47150 * 184.93416 * 3 2 1 5 5 H 1.09000 * 109.47510 * 55.20765 * 4 3 2 6 6 N 1.46906 * 109.46699 * 295.21181 * 4 3 2 7 7 C 1.46899 * 110.99572 * 157.40259 * 6 4 3 8 8 H 1.08997 * 109.47498 * 34.01084 * 7 6 4 9 9 C 1.53000 * 109.47108 * 274.00787 * 7 6 4 10 10 C 1.50709 * 109.46794 * 154.00882 * 7 6 4 11 11 H 1.07998 * 119.99728 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99703 * 179.97438 * 10 7 6 13 13 N 1.31508 * 119.99927 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99770 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47141 * 90.00022 * 14 12 10 16 16 H 1.48503 * 109.47071 * 210.00487 * 14 12 10 17 17 H 1.48500 * 109.46913 * 330.00438 * 14 12 10 18 18 C 1.50696 * 109.47191 * 175.21576 * 4 3 2 19 19 C 1.38234 * 120.00121 * 79.72013 * 18 4 3 20 20 C 1.38242 * 119.99897 * 179.79025 * 19 18 4 21 21 C 1.38231 * 119.99740 * 0.44203 * 20 19 18 22 22 C 1.38239 * 120.00420 * 359.81420 * 21 20 19 23 23 C 1.38233 * 119.99660 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47065 * 300.00446 * 1 2 3 26 26 H 1.08997 * 109.46857 * 60.00158 * 1 2 3 27 27 H 1.09000 * 109.47489 * 239.99883 * 2 1 3 28 28 H 1.09005 * 109.47449 * 119.99701 * 2 1 3 29 29 H 1.08995 * 109.47338 * 64.92949 * 3 2 1 30 30 H 1.08998 * 109.46658 * 304.92721 * 3 2 1 31 31 H 1.00900 * 111.00005 * 281.35693 * 6 4 3 32 32 H 1.09000 * 109.47086 * 54.07242 * 9 7 6 33 33 H 1.09002 * 109.47129 * 174.07903 * 9 7 6 34 34 H 1.09001 * 109.46967 * 294.06963 * 9 7 6 35 35 H 0.97002 * 119.99459 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.00159 * 0.02562 * 19 18 4 37 37 H 1.08000 * 120.00028 * 180.27332 * 20 19 18 38 38 H 1.08004 * 119.99811 * 179.83653 * 21 20 19 39 39 H 1.07997 * 120.00423 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.99961 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1241 5 1 3.8581 0.8828 -1.0111 6 7 4.1539 0.8192 1.0678 7 6 5.5052 0.3170 0.7855 8 1 5.9956 0.9762 0.0692 9 6 5.4132 -1.0936 0.2003 10 6 6.3043 0.2799 2.0628 11 1 5.8532 0.5972 2.9913 12 6 7.6109 -0.1601 2.0460 13 7 8.1599 -0.5469 0.9153 14 14 8.6011 -0.2067 3.6292 15 1 8.4257 -1.5280 4.2840 16 1 10.0381 0.0062 3.3208 17 1 8.1266 0.8646 4.5415 18 6 4.0577 2.8635 -0.2423 19 6 4.1779 3.6499 0.8882 20 6 4.6341 4.9504 0.7803 21 6 4.9613 5.4673 -0.4593 22 6 4.8361 4.6827 -1.5905 23 6 4.3841 3.3808 -1.4820 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7506 1.9303 0.9308 30 1 1.6064 1.9811 -0.8426 31 1 4.1619 1.4611 1.8462 32 1 4.7492 -1.0858 -0.6641 33 1 6.4052 -1.4252 -0.1065 34 1 5.0197 -1.7749 0.9547 35 1 9.0793 -0.8561 0.9035 36 1 3.9191 3.2470 1.8562 37 1 4.7321 5.5634 1.6640 38 1 5.3152 6.4842 -0.5439 39 1 5.0922 5.0864 -2.5588 40 1 4.2859 2.7679 -2.3658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:28 Heat of formation + Delta-G solvation = -10.215749 kcal Electronic energy + Delta-G solvation = -18244.470610 eV Core-core repulsion = 15636.462186 eV Total energy + Delta-G solvation = -2608.008424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56177 -37.97602 -35.87512 -34.10479 -32.39824 -31.76705 -29.86182 -28.27481 -27.17705 -24.62762 -23.46637 -22.23877 -21.96606 -20.88799 -18.60156 -17.75546 -16.97673 -16.28045 -16.12975 -15.60003 -15.45709 -15.20552 -14.62101 -14.40120 -14.19576 -13.91430 -13.60386 -13.47640 -13.18075 -12.83909 -12.77219 -12.50376 -12.35228 -12.29869 -12.20675 -11.99763 -11.82489 -11.56880 -11.49924 -11.36215 -10.84379 -10.57118 -9.77811 -9.54249 -9.00193 -8.12368 -6.25152 0.51650 0.54447 1.40401 1.41170 1.50967 2.41087 2.93542 3.17005 3.66139 3.78952 4.03269 4.16155 4.27411 4.29139 4.36052 4.44081 4.55619 4.69844 4.74637 4.87482 4.91220 4.95286 5.04563 5.09006 5.13612 5.19765 5.21069 5.25984 5.35776 5.47577 5.52405 5.61177 5.63619 5.65839 5.67893 5.79923 5.90779 6.17734 6.22702 6.50991 6.81050 7.04007 7.44789 8.93762 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.008050 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.054575 B = 3477.505532 C = 4656.181573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.087 4.087 4 C 0.124 3.876 5 H 0.061 0.939 6 N -0.669 5.669 7 C 0.224 3.776 8 H -0.034 1.034 9 C -0.108 4.108 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.014 3.986 13 N -0.918 5.918 14 Si 0.958 3.042 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.134 4.134 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.331 0.669 32 H 0.022 0.978 33 H 0.050 0.950 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 8.672 -3.264 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.125 4.125 4 C 0.014 3.986 5 H 0.079 0.921 6 N -0.300 5.300 7 C 0.115 3.885 8 H -0.016 1.016 9 C -0.167 4.167 10 C -0.572 4.572 11 H 0.075 0.925 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.114 4.114 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.153 4.153 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.867 7.966 -3.429 13.904 hybrid contribution 1.504 0.455 0.602 1.683 sum -9.363 8.421 -2.827 12.906 Atomic orbital electron populations 1.21739 0.94769 1.01768 1.01886 1.21356 0.95948 0.96196 1.01578 1.21461 0.91881 0.97422 1.01690 1.20695 0.95574 0.88191 0.94159 0.92095 1.60885 1.23152 1.40185 1.05777 1.18780 0.84125 0.91635 0.93935 1.01607 1.21513 0.99401 0.98558 0.97189 1.21583 0.97267 1.43630 0.94746 0.92484 1.25693 0.98728 0.94861 0.99236 1.70044 1.14064 1.44577 1.27069 0.85562 0.77602 0.78611 0.79896 1.20102 1.21048 1.19196 1.20921 0.98935 0.97449 0.94144 1.21075 1.00653 0.94868 0.98115 1.21397 0.98859 0.95322 0.98775 1.21438 1.00385 1.00956 0.92344 1.21425 0.99195 0.93833 0.99827 1.21263 1.00406 0.96575 0.97051 0.92490 0.92614 0.92261 0.93408 0.92589 0.92096 0.91304 0.84967 0.95949 0.93117 0.95520 0.93018 0.86444 0.84346 0.83639 0.83947 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.11 -3.21 5.76 30.60 0.18 -3.04 16 3 C -0.09 -2.52 4.87 30.60 0.15 -2.37 16 4 C 0.12 4.48 2.04 44.17 0.09 4.57 16 5 H 0.06 2.38 7.03 -2.39 -0.02 2.36 16 6 N -0.67 -28.30 5.56 -477.14 -2.65 -30.95 16 7 C 0.22 11.55 2.41 44.17 0.11 11.66 16 8 H -0.03 -1.96 7.53 -2.39 -0.02 -1.98 16 9 C -0.11 -5.52 9.12 71.98 0.66 -4.86 16 10 C -0.53 -29.73 8.59 25.60 0.22 -29.51 16 11 H 0.06 3.11 7.60 -2.91 -0.02 3.09 16 12 C 0.01 0.78 5.30 84.66 0.45 1.23 16 13 N -0.92 -53.97 11.39 21.45 0.24 -53.73 16 14 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C -0.11 -3.94 4.48 -19.87 -0.09 -4.03 16 19 C -0.13 -4.30 9.14 22.27 0.20 -4.10 16 20 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 21 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 22 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 23 C -0.13 -4.29 9.67 22.27 0.22 -4.08 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.83 7.89 -2.38 -0.02 1.82 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.33 13.87 5.89 -89.69 -0.53 13.34 16 32 H 0.02 1.01 7.42 -2.39 -0.02 0.99 16 33 H 0.05 2.82 6.25 -2.39 -0.01 2.81 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.12 3.87 6.52 -2.91 -0.02 3.85 16 37 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.12 3.61 8.04 -2.91 -0.02 3.59 16 Total: -1.00 -61.74 322.88 3.65 -58.09 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.46 Total: 27.25 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 3.56 Total: -46.88 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.41 Total: -84.68 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.74 3.65 -58.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.877 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds