Wall clock time and date at job start Mon Mar 30 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 C 1.53000 * 109.47277 * 174.58831 * 3 2 1 5 5 H 1.09001 * 109.46520 * 305.74719 * 4 3 2 6 6 N 1.46892 * 109.47432 * 65.74480 * 4 3 2 7 7 C 1.46900 * 111.00039 * 209.71761 * 6 4 3 8 8 H 1.08999 * 109.47563 * 31.21006 * 7 6 4 9 9 C 1.53000 * 109.47098 * 271.21042 * 7 6 4 10 10 C 1.50702 * 109.47197 * 151.21384 * 7 6 4 11 11 H 1.08001 * 120.00077 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99882 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00192 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00000 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47258 * 89.99561 * 14 12 10 16 16 H 1.48495 * 109.47360 * 209.99612 * 14 12 10 17 17 H 1.48505 * 109.46904 * 329.99673 * 14 12 10 18 18 C 1.50697 * 109.47039 * 185.74812 * 4 3 2 19 19 C 1.38228 * 119.99896 * 279.72424 * 18 4 3 20 20 C 1.38238 * 119.99965 * 179.79042 * 19 18 4 21 21 C 1.38235 * 119.99822 * 0.44040 * 20 19 18 22 22 C 1.38230 * 120.00023 * 359.80976 * 21 20 19 23 23 C 1.38233 * 120.00028 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46953 * 300.00232 * 1 2 3 25 25 H 1.08996 * 109.47371 * 59.99760 * 1 2 3 26 26 H 1.08994 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47060 * 240.00260 * 2 1 3 28 28 H 1.08996 * 109.47371 * 120.00240 * 2 1 3 29 29 H 1.08995 * 109.47024 * 54.58151 * 3 2 1 30 30 H 1.08997 * 109.46882 * 294.58314 * 3 2 1 31 31 H 1.00902 * 111.00281 * 333.66952 * 6 4 3 32 32 H 1.08994 * 109.47569 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47268 * 59.99887 * 9 7 6 34 34 H 1.09008 * 109.47138 * 299.99856 * 9 7 6 35 35 H 0.96997 * 119.99648 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.00510 * 359.97438 * 19 18 4 37 37 H 1.08002 * 119.99977 * 180.27145 * 20 19 18 38 38 H 1.08001 * 119.99778 * 179.83554 * 21 20 19 39 39 H 1.08001 * 119.99895 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.99918 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5640 1.4447 0.1360 5 1 3.8508 0.8714 1.0176 6 7 4.1632 0.8371 -1.0595 7 6 5.4388 0.1846 -0.7354 8 1 5.4050 -0.1917 0.2870 9 6 6.5780 1.1972 -0.8686 10 6 5.6723 -0.9619 -1.6852 11 1 4.9455 -1.1839 -2.4526 12 6 6.8132 -1.7280 -1.5738 13 7 7.6979 -1.4580 -0.6389 14 14 7.1022 -3.1496 -2.7506 15 1 7.8441 -2.6633 -3.9416 16 1 7.8964 -4.2030 -2.0689 17 1 5.7959 -3.7126 -3.1771 18 6 4.0536 2.8629 0.2779 19 6 4.1923 3.6614 -0.8418 20 6 4.6373 4.9637 -0.7112 21 6 4.9522 5.4644 0.5382 22 6 4.8184 4.6642 1.6574 23 6 4.3692 3.3634 1.5272 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5996 1.9836 0.8375 30 1 1.7581 1.9276 -0.9345 31 1 3.5248 0.1874 -1.4936 32 1 7.5245 0.7131 -0.6286 33 1 6.4092 2.0265 -0.1817 34 1 6.6119 1.5735 -1.8911 35 1 8.5007 -1.9968 -0.5608 36 1 3.9502 3.2689 -1.8184 37 1 4.7415 5.5890 -1.5856 38 1 5.3024 6.4810 0.6399 39 1 5.0641 5.0556 2.6335 40 1 4.2651 2.7381 2.4016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:31 Heat of formation + Delta-G solvation = 5.727258 kcal Electronic energy + Delta-G solvation = -18243.481801 eV Core-core repulsion = 15636.164718 eV Total energy + Delta-G solvation = -2607.317084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12641 -36.65905 -34.24570 -32.42569 -30.81358 -30.39408 -28.65992 -26.46875 -25.10006 -23.48377 -22.13326 -21.02458 -20.19993 -19.46060 -16.55591 -16.31866 -15.28026 -14.93871 -14.56333 -14.48577 -14.14447 -13.54605 -13.13405 -12.88141 -12.87370 -12.40024 -12.27561 -12.05313 -11.63811 -11.37503 -11.10576 -10.98923 -10.78509 -10.76237 -10.57704 -10.45992 -10.21182 -10.11006 -10.00082 -9.85885 -8.81275 -8.45711 -8.44321 -8.12242 -7.29468 -6.00092 -4.07172 1.82022 1.88888 3.30076 3.36612 3.38999 4.24838 4.41074 4.97853 5.15459 5.28139 5.29781 5.31679 5.35318 5.42634 5.50321 5.61408 5.82859 5.90025 5.92214 6.00883 6.05392 6.10002 6.24438 6.32004 6.45212 6.46993 6.58035 6.62789 6.88259 6.93946 7.00614 7.18371 7.27475 7.34605 7.47846 7.58625 7.80057 7.96525 8.31751 8.43051 8.70426 9.04690 9.58753 11.05569 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.007317 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.798570 B = 3825.984195 C = 4984.746086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.114 4.114 4 C 0.120 3.880 5 H 0.047 0.953 6 N -0.681 5.681 7 C 0.215 3.785 8 H 0.001 0.999 9 C -0.121 4.121 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.051 4.051 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.123 4.123 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.334 0.666 32 H 0.075 0.925 33 H 0.009 0.991 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 8.561 2.947 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.152 4.152 4 C 0.010 3.990 5 H 0.065 0.935 6 N -0.314 5.314 7 C 0.108 3.892 8 H 0.019 0.981 9 C -0.179 4.179 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.051 4.051 19 C -0.099 4.099 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.232 9.052 2.805 13.230 hybrid contribution 0.174 -1.539 -0.100 1.552 sum -9.059 7.512 2.705 12.075 Atomic orbital electron populations 1.21743 0.96192 1.01228 1.01370 1.21585 0.95357 0.97058 1.02638 1.21772 0.94666 0.96638 1.02115 1.20515 0.92425 0.91649 0.94437 0.93504 1.60737 1.07200 1.39078 1.24370 1.19149 0.84531 0.90764 0.94756 0.98112 1.21697 1.01687 0.96683 0.97881 1.21311 1.05792 1.12802 1.15980 0.92370 1.24910 0.95958 0.97537 0.95511 1.69911 1.10438 1.39584 1.32767 0.86564 0.78192 0.82004 0.81013 1.20664 1.21317 1.19973 1.19960 0.96959 0.95599 0.92627 1.21022 0.97319 0.92424 0.99160 1.21129 1.00619 0.96144 0.96963 1.20987 1.01777 0.99398 0.93075 1.20958 1.01047 0.94425 0.98172 1.21008 1.00361 0.95603 0.97151 0.93157 0.92899 0.93024 0.91305 0.92118 0.92145 0.91392 0.84643 0.90615 0.97196 0.95389 0.92990 0.85402 0.86845 0.87058 0.86927 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.13 -1.78 5.69 -26.73 -0.15 -1.93 16 3 C -0.11 -1.65 4.74 -26.73 -0.13 -1.78 16 4 C 0.12 2.14 2.25 -68.87 -0.15 1.99 16 5 H 0.05 0.92 7.16 -51.93 -0.37 0.54 16 6 N -0.68 -14.08 5.40 -102.18 -0.55 -14.64 16 7 C 0.22 5.43 2.62 -68.86 -0.18 5.25 16 8 H 0.00 0.04 7.31 -51.93 -0.38 -0.34 16 9 C -0.12 -3.09 9.06 37.16 0.34 -2.75 16 10 C -0.52 -14.19 8.59 -34.44 -0.30 -14.49 16 11 H 0.06 1.56 7.56 -52.49 -0.40 1.16 16 12 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.05 -0.88 3.32 -104.63 -0.35 -1.23 16 19 C -0.08 -1.38 9.22 -39.59 -0.36 -1.74 16 20 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 21 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 22 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 23 C -0.12 -1.99 9.67 -39.58 -0.38 -2.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.03 6.66 -51.93 -0.35 0.68 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.33 6.73 5.98 -39.29 -0.24 6.50 16 32 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.22 6.59 -51.93 -0.34 -0.12 16 34 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 2.22 7.71 -52.48 -0.40 1.82 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -28.57 320.64 -9.28 -37.85 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.58 Total: 6.31 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -2.59 Total: -25.67 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.08 Total: -39.63 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.57 -9.28 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.579 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds