Wall clock time and date at job start Mon Mar 30 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 C 1.53000 * 109.47277 * 174.58831 * 3 2 1 5 5 H 1.09001 * 109.46520 * 305.74719 * 4 3 2 6 6 N 1.46892 * 109.47432 * 65.74480 * 4 3 2 7 7 C 1.46900 * 111.00039 * 209.71761 * 6 4 3 8 8 H 1.08999 * 109.47563 * 31.21006 * 7 6 4 9 9 C 1.53000 * 109.47098 * 271.21042 * 7 6 4 10 10 C 1.50702 * 109.47197 * 151.21384 * 7 6 4 11 11 H 1.08001 * 120.00077 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99882 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00192 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00000 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47258 * 89.99561 * 14 12 10 16 16 H 1.48495 * 109.47360 * 209.99612 * 14 12 10 17 17 H 1.48505 * 109.46904 * 329.99673 * 14 12 10 18 18 C 1.50697 * 109.47039 * 185.74812 * 4 3 2 19 19 C 1.38228 * 119.99896 * 279.72424 * 18 4 3 20 20 C 1.38238 * 119.99965 * 179.79042 * 19 18 4 21 21 C 1.38235 * 119.99822 * 0.44040 * 20 19 18 22 22 C 1.38230 * 120.00023 * 359.80976 * 21 20 19 23 23 C 1.38233 * 120.00028 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46953 * 300.00232 * 1 2 3 25 25 H 1.08996 * 109.47371 * 59.99760 * 1 2 3 26 26 H 1.08994 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47060 * 240.00260 * 2 1 3 28 28 H 1.08996 * 109.47371 * 120.00240 * 2 1 3 29 29 H 1.08995 * 109.47024 * 54.58151 * 3 2 1 30 30 H 1.08997 * 109.46882 * 294.58314 * 3 2 1 31 31 H 1.00902 * 111.00281 * 333.66952 * 6 4 3 32 32 H 1.08994 * 109.47569 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47268 * 59.99887 * 9 7 6 34 34 H 1.09008 * 109.47138 * 299.99856 * 9 7 6 35 35 H 0.96997 * 119.99648 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.00510 * 359.97438 * 19 18 4 37 37 H 1.08002 * 119.99977 * 180.27145 * 20 19 18 38 38 H 1.08001 * 119.99778 * 179.83554 * 21 20 19 39 39 H 1.08001 * 119.99895 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.99918 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5640 1.4447 0.1360 5 1 3.8508 0.8714 1.0176 6 7 4.1632 0.8371 -1.0595 7 6 5.4388 0.1846 -0.7354 8 1 5.4050 -0.1917 0.2870 9 6 6.5780 1.1972 -0.8686 10 6 5.6723 -0.9619 -1.6852 11 1 4.9455 -1.1839 -2.4526 12 6 6.8132 -1.7280 -1.5738 13 7 7.6979 -1.4580 -0.6389 14 14 7.1022 -3.1496 -2.7506 15 1 7.8441 -2.6633 -3.9416 16 1 7.8964 -4.2030 -2.0689 17 1 5.7959 -3.7126 -3.1771 18 6 4.0536 2.8629 0.2779 19 6 4.1923 3.6614 -0.8418 20 6 4.6373 4.9637 -0.7112 21 6 4.9522 5.4644 0.5382 22 6 4.8184 4.6642 1.6574 23 6 4.3692 3.3634 1.5272 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5996 1.9836 0.8375 30 1 1.7581 1.9276 -0.9345 31 1 3.5248 0.1874 -1.4936 32 1 7.5245 0.7131 -0.6286 33 1 6.4092 2.0265 -0.1817 34 1 6.6119 1.5735 -1.8911 35 1 8.5007 -1.9968 -0.5608 36 1 3.9502 3.2689 -1.8184 37 1 4.7415 5.5890 -1.5856 38 1 5.3024 6.4810 0.6399 39 1 5.0641 5.0556 2.6335 40 1 4.2651 2.7381 2.4016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:31 Heat of formation + Delta-G solvation = -8.943066 kcal Electronic energy + Delta-G solvation = -18244.117954 eV Core-core repulsion = 15636.164718 eV Total energy + Delta-G solvation = -2607.953237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42527 -38.10818 -35.93834 -34.02895 -32.37987 -31.61698 -30.19006 -27.97451 -27.21130 -24.74182 -23.37101 -22.16920 -22.01712 -20.96462 -18.53200 -17.57846 -16.94911 -16.40200 -16.05793 -15.87418 -15.52918 -14.99732 -14.53586 -14.42203 -14.10769 -13.91345 -13.64090 -13.40366 -13.16412 -12.94712 -12.81694 -12.53969 -12.45290 -12.19419 -12.15621 -12.07139 -11.75856 -11.67946 -11.49938 -11.37005 -10.86008 -10.55900 -9.66810 -9.40316 -9.06591 -8.12359 -6.27428 0.60305 0.67418 1.41021 1.42022 1.51948 2.40789 3.02501 3.15527 3.57855 3.90159 4.10268 4.13521 4.19559 4.28568 4.36111 4.43143 4.59569 4.75551 4.78220 4.83156 4.85749 4.89373 4.94233 5.09626 5.14297 5.24148 5.26251 5.30657 5.32039 5.35219 5.47110 5.49486 5.66180 5.70155 5.75547 5.88241 5.96844 6.22333 6.28454 6.50968 6.80722 7.04982 7.43309 8.92642 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.007317 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.798570 B = 3825.984195 C = 4984.746086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.102 4.102 4 C 0.122 3.878 5 H 0.024 0.976 6 N -0.674 5.674 7 C 0.225 3.775 8 H -0.035 1.035 9 C -0.103 4.103 10 C -0.538 4.538 11 H 0.060 0.940 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.961 3.039 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.071 4.071 19 C -0.099 4.099 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.140 4.140 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.336 0.664 32 H 0.049 0.951 33 H 0.018 0.982 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 9.582 2.600 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.140 4.140 4 C 0.012 3.988 5 H 0.042 0.958 6 N -0.306 5.306 7 C 0.116 3.884 8 H -0.017 1.017 9 C -0.161 4.161 10 C -0.576 4.576 11 H 0.078 0.922 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.786 3.214 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.071 4.071 19 C -0.118 4.118 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.159 4.159 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.097 10.083 2.457 14.479 hybrid contribution 0.438 -1.779 0.062 1.833 sum -9.659 8.303 2.519 12.984 Atomic orbital electron populations 1.21693 0.93805 1.02068 1.02336 1.21563 0.97430 0.96257 1.01321 1.21688 0.92106 0.97301 1.02916 1.20542 0.94597 0.91670 0.92034 0.95848 1.60635 1.06000 1.38165 1.25801 1.18873 0.86577 0.90501 0.92400 1.01742 1.21465 1.00523 0.96619 0.97505 1.21651 1.06036 1.13641 1.16312 0.92173 1.25739 0.95702 1.00108 0.97068 1.70048 1.10832 1.40648 1.34245 0.85514 0.78329 0.78739 0.78781 1.20220 1.21000 1.18994 1.19957 0.98431 0.95194 0.93564 1.21035 0.98678 0.93572 0.98468 1.21431 0.99718 0.95546 0.98459 1.21392 1.00501 1.00775 0.92370 1.21317 0.99818 0.93647 0.99803 1.21197 1.01020 0.96785 0.96857 0.92034 0.92059 0.92301 0.92792 0.93303 0.90664 0.90901 0.84455 0.93255 0.96340 0.95912 0.92948 0.86481 0.84622 0.83852 0.84224 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.13 -3.52 5.69 30.60 0.17 -3.34 16 3 C -0.10 -2.93 4.74 30.60 0.14 -2.79 16 4 C 0.12 4.44 2.25 44.17 0.10 4.54 16 5 H 0.02 0.97 7.16 -2.39 -0.02 0.95 16 6 N -0.67 -28.58 5.40 -477.18 -2.58 -31.16 16 7 C 0.23 11.72 2.62 44.17 0.12 11.83 16 8 H -0.03 -2.04 7.31 -2.39 -0.02 -2.06 16 9 C -0.10 -5.38 9.06 71.98 0.65 -4.72 16 10 C -0.54 -29.87 8.59 25.60 0.22 -29.65 16 11 H 0.06 3.24 7.56 -2.91 -0.02 3.22 16 12 C 0.01 0.73 5.30 84.65 0.45 1.17 16 13 N -0.92 -54.06 11.32 21.45 0.24 -53.81 16 14 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 C -0.07 -2.46 3.32 -19.87 -0.07 -2.52 16 19 C -0.10 -3.31 9.22 22.27 0.21 -3.11 16 20 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 21 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.14 -4.46 9.67 22.27 0.22 -4.24 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.63 6.66 -2.39 -0.02 1.61 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.34 13.85 5.98 -89.69 -0.54 13.32 16 32 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 33 H 0.02 0.88 6.59 -2.39 -0.02 0.87 16 34 H 0.02 1.15 8.14 -2.38 -0.02 1.14 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.12 4.08 7.71 -2.91 -0.02 4.05 16 37 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.12 3.50 8.04 -2.91 -0.02 3.48 16 Total: -1.00 -61.75 320.64 3.74 -58.00 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.46 Total: 26.10 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 3.59 Total: -45.07 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.33 Total: -84.97 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.75 3.74 -58.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.059 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds