Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.08993 * 109.47028 * 54.28970 * 3 2 1 5 5 C 1.53006 * 109.46583 * 294.29415 * 3 2 1 6 6 C 1.50705 * 109.46855 * 174.99923 * 5 3 2 7 7 C 1.38240 * 119.99908 * 89.99904 * 6 5 3 8 8 C 1.38228 * 119.99821 * 180.02562 * 7 6 5 9 9 C 1.38233 * 120.00226 * 359.97438 * 8 7 6 10 10 C 1.38233 * 119.99864 * 0.25695 * 9 8 7 11 11 C 1.38230 * 120.00106 * 359.49526 * 10 9 8 12 12 N 1.46897 * 109.47243 * 174.29815 * 3 2 1 13 13 C 1.46907 * 110.99639 * 275.82359 * 12 3 2 14 14 H 1.09001 * 109.46699 * 33.72053 * 13 12 3 15 15 C 1.52997 * 109.47246 * 273.71797 * 13 12 3 16 16 C 1.50700 * 109.46862 * 153.71596 * 13 12 3 17 17 H 1.08000 * 120.00347 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99869 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99770 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 119.99953 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47390 * 60.00041 * 20 18 16 22 22 H 1.48498 * 109.47259 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47036 * 299.99714 * 20 18 16 24 24 H 1.09001 * 109.46885 * 306.02454 * 1 2 3 25 25 H 1.08998 * 109.46518 * 66.01966 * 1 2 3 26 26 H 1.08994 * 109.46821 * 186.02078 * 1 2 3 27 27 H 1.09002 * 109.47469 * 239.99981 * 2 1 3 28 28 H 1.09002 * 109.47255 * 119.99619 * 2 1 3 29 29 H 1.08994 * 109.47518 * 55.00239 * 5 3 2 30 30 H 1.08997 * 109.47132 * 294.99877 * 5 3 2 31 31 H 1.07997 * 119.99862 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.99866 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.00308 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.00100 * 179.72547 * 10 9 8 35 35 H 1.07998 * 120.00479 * 180.23269 * 11 10 9 36 36 H 1.00892 * 111.00297 * 39.77630 * 12 3 2 37 37 H 1.08991 * 109.47104 * 300.00454 * 15 13 12 38 38 H 1.08999 * 109.46987 * 60.00172 * 15 13 12 39 39 H 1.09001 * 109.47014 * 179.97438 * 15 13 12 40 40 H 0.97002 * 119.99939 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5957 1.9850 0.8344 5 6 1.6505 2.1211 -1.3149 6 6 2.0441 3.5750 -1.2656 7 6 3.2957 3.9674 -1.7020 8 6 3.6568 5.3009 -1.6563 9 6 2.7662 6.2421 -1.1748 10 6 1.5164 5.8491 -0.7340 11 6 1.1533 4.5163 -0.7844 12 7 3.5026 1.4448 0.1376 13 6 3.8986 1.3517 1.5492 14 1 3.1780 0.7373 2.0889 15 6 3.9346 2.7530 2.1623 16 6 5.2658 0.7253 1.6470 17 1 5.7884 0.4266 0.7504 18 6 5.8495 0.5334 2.8815 19 7 5.2133 0.8976 3.9733 20 14 7.5443 -0.2424 3.0027 21 1 8.5260 0.5953 2.2681 22 1 7.9441 -0.3378 4.4297 23 1 7.5100 -1.6022 2.4069 24 1 -0.3633 0.6044 0.8312 25 1 -0.3632 0.4177 -0.9390 26 1 -0.3633 -1.0220 0.1078 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5732 2.0411 -1.4598 30 1 2.1657 1.6330 -2.1422 31 1 3.9916 3.2320 -2.0778 32 1 4.6348 5.6075 -1.9968 33 1 3.0486 7.2840 -1.1387 34 1 0.8222 6.5838 -0.3536 35 1 0.1755 4.2096 -0.4435 36 1 3.9179 0.7019 -0.4042 37 1 4.6552 3.3673 1.6225 38 1 2.9458 3.2060 2.0915 39 1 4.2281 2.6838 3.2098 40 1 5.6237 0.7623 4.8418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310030051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = 3.822763 kcal Electronic energy + Delta-G solvation = -18284.276331 eV Core-core repulsion = 15676.876662 eV Total energy + Delta-G solvation = -2607.399669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.00825 -37.00795 -33.94882 -31.72919 -31.47014 -30.44641 -28.39494 -26.45802 -25.09692 -23.48519 -22.13915 -21.15840 -20.14995 -19.41779 -16.63269 -16.20685 -15.10988 -15.01851 -14.60974 -14.06206 -14.00093 -13.73784 -13.33400 -13.00139 -12.49851 -12.34536 -12.18388 -11.89012 -11.76586 -11.42835 -11.14559 -10.88051 -10.86162 -10.65755 -10.51383 -10.42665 -10.27482 -10.14510 -10.04486 -9.74317 -8.78904 -8.48211 -8.43731 -8.17713 -7.13926 -5.99287 -4.05415 1.80737 1.86905 3.31814 3.36485 3.39058 4.22854 4.42195 5.11410 5.17157 5.29804 5.33856 5.37127 5.38765 5.46787 5.55611 5.68604 5.83841 5.91143 5.94330 6.05326 6.09364 6.24156 6.29083 6.34545 6.43970 6.49874 6.66165 6.72918 6.86971 6.93903 6.98113 7.15209 7.24714 7.33850 7.46023 7.59961 7.81601 7.97365 8.33175 8.46714 8.74324 9.06676 9.60281 11.06845 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.006921 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.699625 B = 4044.550500 C = 4889.014504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.071 0.929 5 C -0.072 4.072 6 C -0.053 4.053 7 C -0.083 4.083 8 C -0.123 4.123 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.126 4.126 12 N -0.678 5.678 13 C 0.215 3.785 14 H 0.000 1.000 15 C -0.119 4.119 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.328 0.672 37 H 0.029 0.971 38 H 0.002 0.998 39 H 0.077 0.923 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 4.553 -9.811 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C -0.017 4.017 4 H 0.089 0.911 5 C -0.109 4.109 6 C -0.054 4.054 7 C -0.101 4.101 8 C -0.141 4.141 9 C -0.152 4.152 10 C -0.145 4.145 11 C -0.144 4.144 12 N -0.308 5.308 13 C 0.108 3.892 14 H 0.018 0.982 15 C -0.177 4.177 16 C -0.556 4.556 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.048 0.952 38 H 0.021 0.979 39 H 0.095 0.905 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.023 5.253 -9.606 13.573 hybrid contribution 0.803 -1.305 0.540 1.625 sum -7.219 3.948 -9.066 12.243 Atomic orbital electron populations 1.21768 0.96471 1.00941 1.01334 1.22291 0.95689 0.99105 1.02179 1.21532 0.91096 0.92952 0.96101 0.91123 1.20727 0.99901 0.91658 0.98656 1.19727 0.93926 0.94956 0.96742 1.20977 0.95492 0.95255 0.98407 1.21092 0.99001 0.93619 1.00424 1.20986 0.94464 0.99005 1.00725 1.20965 0.96716 0.95908 1.00901 1.20955 0.99452 0.93090 1.00874 1.60806 1.04605 1.51452 1.13934 1.19039 0.94625 0.93164 0.82370 0.98196 1.21660 0.96302 0.97123 1.02664 1.21250 1.02255 1.39647 0.92452 0.92436 1.24908 0.97651 0.95609 0.95789 1.69894 1.37921 1.47361 0.97690 0.86627 0.84581 0.79703 0.76857 1.20267 1.21357 1.20408 0.92927 0.92955 0.93454 0.92407 0.91423 0.91644 0.91521 0.86038 0.86787 0.87041 0.86995 0.86965 0.85484 0.95208 0.97924 0.90482 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.54 37.16 0.35 -1.57 16 2 C -0.15 -2.42 5.37 -26.73 -0.14 -2.56 16 3 C 0.09 1.63 1.85 -67.71 -0.13 1.51 16 4 H 0.07 1.37 7.21 -51.93 -0.37 1.00 16 5 C -0.07 -1.05 4.90 -27.88 -0.14 -1.18 16 6 C -0.05 -0.84 4.95 -104.62 -0.52 -1.36 16 7 C -0.08 -1.34 9.31 -39.58 -0.37 -1.71 16 8 C -0.12 -1.86 10.05 -39.59 -0.40 -2.25 16 9 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 10 C -0.13 -1.80 10.05 -39.59 -0.40 -2.19 16 11 C -0.13 -1.87 9.70 -39.59 -0.38 -2.26 16 12 N -0.68 -13.92 5.43 -100.95 -0.55 -14.47 16 13 C 0.22 5.40 2.39 -68.86 -0.16 5.24 16 14 H 0.00 0.01 7.04 -51.93 -0.37 -0.35 16 15 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 16 C -0.52 -14.13 8.59 -34.44 -0.30 -14.43 16 17 H 0.06 1.54 7.60 -52.49 -0.40 1.15 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.60 6.77 -51.93 -0.35 0.25 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.24 7.32 -51.93 -0.38 0.86 16 29 H 0.07 0.84 6.45 -51.93 -0.33 0.51 16 30 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.33 6.63 7.96 -39.30 -0.31 6.32 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.00 0.04 7.51 -51.93 -0.39 -0.35 16 39 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -28.61 322.02 -9.40 -38.01 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.58 Total: 6.38 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -2.73 Total: -26.14 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.08 Total: -39.50 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.61 -9.40 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310030051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.836 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds