Wall clock time and date at job start Mon Mar 30 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.08993 * 109.47028 * 54.28970 * 3 2 1 5 5 C 1.53006 * 109.46583 * 294.29415 * 3 2 1 6 6 C 1.50705 * 109.46855 * 174.99923 * 5 3 2 7 7 C 1.38240 * 119.99908 * 89.99904 * 6 5 3 8 8 C 1.38228 * 119.99821 * 180.02562 * 7 6 5 9 9 C 1.38233 * 120.00226 * 359.97438 * 8 7 6 10 10 C 1.38233 * 119.99864 * 0.25695 * 9 8 7 11 11 C 1.38230 * 120.00106 * 359.49526 * 10 9 8 12 12 N 1.46897 * 109.47243 * 174.29815 * 3 2 1 13 13 C 1.46907 * 110.99639 * 275.82359 * 12 3 2 14 14 H 1.09001 * 109.46699 * 33.72053 * 13 12 3 15 15 C 1.52997 * 109.47246 * 273.71797 * 13 12 3 16 16 C 1.50700 * 109.46862 * 153.71596 * 13 12 3 17 17 H 1.08000 * 120.00347 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99869 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99770 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 119.99953 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47390 * 60.00041 * 20 18 16 22 22 H 1.48498 * 109.47259 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47036 * 299.99714 * 20 18 16 24 24 H 1.09001 * 109.46885 * 306.02454 * 1 2 3 25 25 H 1.08998 * 109.46518 * 66.01966 * 1 2 3 26 26 H 1.08994 * 109.46821 * 186.02078 * 1 2 3 27 27 H 1.09002 * 109.47469 * 239.99981 * 2 1 3 28 28 H 1.09002 * 109.47255 * 119.99619 * 2 1 3 29 29 H 1.08994 * 109.47518 * 55.00239 * 5 3 2 30 30 H 1.08997 * 109.47132 * 294.99877 * 5 3 2 31 31 H 1.07997 * 119.99862 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.99866 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.00308 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.00100 * 179.72547 * 10 9 8 35 35 H 1.07998 * 120.00479 * 180.23269 * 11 10 9 36 36 H 1.00892 * 111.00297 * 39.77630 * 12 3 2 37 37 H 1.08991 * 109.47104 * 300.00454 * 15 13 12 38 38 H 1.08999 * 109.46987 * 60.00172 * 15 13 12 39 39 H 1.09001 * 109.47014 * 179.97438 * 15 13 12 40 40 H 0.97002 * 119.99939 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5957 1.9850 0.8344 5 6 1.6505 2.1211 -1.3149 6 6 2.0441 3.5750 -1.2656 7 6 3.2957 3.9674 -1.7020 8 6 3.6568 5.3009 -1.6563 9 6 2.7662 6.2421 -1.1748 10 6 1.5164 5.8491 -0.7340 11 6 1.1533 4.5163 -0.7844 12 7 3.5026 1.4448 0.1376 13 6 3.8986 1.3517 1.5492 14 1 3.1780 0.7373 2.0889 15 6 3.9346 2.7530 2.1623 16 6 5.2658 0.7253 1.6470 17 1 5.7884 0.4266 0.7504 18 6 5.8495 0.5334 2.8815 19 7 5.2133 0.8976 3.9733 20 14 7.5443 -0.2424 3.0027 21 1 8.5260 0.5953 2.2681 22 1 7.9441 -0.3378 4.4297 23 1 7.5100 -1.6022 2.4069 24 1 -0.3633 0.6044 0.8312 25 1 -0.3632 0.4177 -0.9390 26 1 -0.3633 -1.0220 0.1078 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5732 2.0411 -1.4598 30 1 2.1657 1.6330 -2.1422 31 1 3.9916 3.2320 -2.0778 32 1 4.6348 5.6075 -1.9968 33 1 3.0486 7.2840 -1.1387 34 1 0.8222 6.5838 -0.3536 35 1 0.1755 4.2096 -0.4435 36 1 3.9179 0.7019 -0.4042 37 1 4.6552 3.3673 1.6225 38 1 2.9458 3.2060 2.0915 39 1 4.2281 2.6838 3.2098 40 1 5.6237 0.7623 4.8418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310030051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:26 Heat of formation + Delta-G solvation = -11.001587 kcal Electronic energy + Delta-G solvation = -18284.919163 eV Core-core repulsion = 15676.876662 eV Total energy + Delta-G solvation = -2608.042501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20060 -38.49155 -35.77525 -33.37679 -32.82982 -31.57415 -30.05943 -27.91450 -27.17835 -24.78778 -23.27823 -22.46096 -21.80959 -20.98643 -18.47374 -17.53055 -16.90161 -16.27710 -16.05853 -15.46724 -15.36748 -15.31579 -14.80315 -14.16501 -14.08110 -13.73905 -13.48621 -13.32186 -13.23739 -13.05199 -12.79953 -12.56495 -12.45359 -12.21141 -12.15297 -11.98058 -11.87579 -11.61675 -11.49208 -11.36476 -10.87193 -10.55320 -9.62194 -9.35931 -8.84957 -8.11706 -6.25285 0.66328 0.72238 1.41125 1.42991 1.50339 2.41528 3.07268 3.16824 3.69125 3.93839 4.14763 4.16756 4.28676 4.35552 4.44330 4.45273 4.58998 4.73114 4.82229 4.83478 4.84691 4.93084 5.02793 5.09994 5.12911 5.20355 5.25454 5.30285 5.36151 5.38140 5.50934 5.53721 5.70995 5.74781 5.79797 5.90671 5.99446 6.24517 6.34041 6.55384 6.85821 7.09563 7.45234 8.93721 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.006921 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.699625 B = 4044.550500 C = 4889.014504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.047 0.953 5 C -0.061 4.061 6 C -0.071 4.071 7 C -0.104 4.104 8 C -0.137 4.137 9 C -0.140 4.140 10 C -0.133 4.133 11 C -0.137 4.137 12 N -0.673 5.673 13 C 0.225 3.775 14 H -0.032 1.032 15 C -0.102 4.102 16 C -0.535 4.535 17 H 0.059 0.941 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.270 1.270 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.330 0.670 37 H 0.020 0.980 38 H 0.011 0.989 39 H 0.051 0.949 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 4.762 -10.998 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.187 4.187 3 C -0.013 4.013 4 H 0.065 0.935 5 C -0.099 4.099 6 C -0.071 4.071 7 C -0.122 4.122 8 C -0.155 4.155 9 C -0.157 4.157 10 C -0.151 4.151 11 C -0.155 4.155 12 N -0.303 5.303 13 C 0.117 3.883 14 H -0.014 1.014 15 C -0.161 4.161 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.195 1.195 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.489 5.461 -10.816 14.794 hybrid contribution 0.901 -1.321 0.899 1.834 sum -7.587 4.140 -9.916 13.155 Atomic orbital electron populations 1.21726 0.93950 1.01890 1.02353 1.22190 0.97906 0.97536 1.01094 1.21547 0.88763 0.94065 0.96951 0.93461 1.20649 1.01448 0.90912 0.96860 1.19906 0.94151 0.95643 0.97379 1.21093 0.95861 0.95811 0.99418 1.21360 0.99965 0.93563 1.00631 1.21331 0.94357 1.00106 0.99952 1.21336 0.97193 0.96267 1.00275 1.21247 1.00104 0.93456 1.00670 1.60707 1.07077 1.51437 1.11050 1.18750 0.93173 0.91897 0.84513 1.01439 1.21440 0.96315 0.97429 1.00880 1.21603 1.03233 1.39820 0.92662 0.92298 1.25719 1.01355 0.96085 0.95482 1.70030 1.39479 1.48259 0.98092 0.85598 0.80003 0.79065 0.76870 1.19781 1.21086 1.19500 0.93460 0.90661 0.92282 0.91068 0.94867 0.89181 0.90728 0.86696 0.85541 0.84708 0.84559 0.85405 0.85277 0.96053 0.97035 0.92982 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.54 71.98 0.69 -2.73 16 2 C -0.15 -4.58 5.37 30.60 0.16 -4.41 16 3 C 0.10 3.33 1.85 44.92 0.08 3.42 16 4 H 0.05 1.84 7.21 -2.39 -0.02 1.83 16 5 C -0.06 -1.69 4.90 29.85 0.15 -1.54 16 6 C -0.07 -2.15 4.95 -19.86 -0.10 -2.25 16 7 C -0.10 -3.28 9.31 22.27 0.21 -3.08 16 8 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 9 C -0.14 -3.71 10.05 22.27 0.22 -3.49 16 10 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 11 C -0.14 -3.84 9.70 22.27 0.22 -3.62 16 12 N -0.67 -27.86 5.43 -473.30 -2.57 -30.43 16 13 C 0.23 11.57 2.39 44.17 0.11 11.68 16 14 H -0.03 -1.82 7.04 -2.39 -0.02 -1.84 16 15 C -0.10 -5.34 9.19 71.98 0.66 -4.68 16 16 C -0.53 -29.59 8.59 25.60 0.22 -29.37 16 17 H 0.06 3.17 7.60 -2.91 -0.02 3.15 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 20 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.48 6.77 -2.39 -0.02 1.47 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.03 1.24 7.32 -2.39 -0.02 1.22 16 29 H 0.09 2.05 6.45 -2.39 -0.02 2.03 16 30 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 31 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.33 13.39 7.96 -89.70 -0.71 12.67 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.01 0.53 7.51 -2.39 -0.02 0.51 16 39 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -61.73 322.02 3.49 -58.23 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.28 Total: 25.85 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.51 Total: -45.96 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.33 Total: -84.16 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.73 3.49 -58.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310030051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.230 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds