Wall clock time and date at job start Mon Mar 30 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46996 * 2 1 4 4 H 1.08991 * 109.46961 * 55.00264 * 3 2 1 5 5 N 1.46495 * 109.46900 * 294.99956 * 3 2 1 6 6 C 1.36939 * 120.00126 * 85.00469 * 5 3 2 7 7 H 1.08006 * 119.99463 * 359.97438 * 6 5 3 8 8 C 1.38808 * 120.00332 * 179.97438 * 6 5 3 9 9 N 1.31618 * 120.00329 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99961 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47330 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47285 * 119.99987 * 10 8 6 13 13 H 1.48501 * 109.46761 * 240.00092 * 10 8 6 14 14 C 1.50703 * 109.46796 * 175.00235 * 3 2 1 15 15 C 1.38231 * 119.99899 * 260.00190 * 14 3 2 16 16 C 1.38234 * 119.99931 * 179.97438 * 15 14 3 17 17 C 1.38232 * 120.00080 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00112 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46966 * 240.00114 * 18 17 16 20 20 C 1.53000 * 109.46912 * 120.00202 * 18 17 16 21 21 C 1.38237 * 120.00084 * 0.25709 * 17 16 15 22 22 C 1.38236 * 119.99852 * 359.49003 * 21 17 16 23 23 H 1.09001 * 109.46799 * 299.99875 * 1 2 3 24 24 H 1.09000 * 109.47070 * 59.99469 * 1 2 3 25 25 H 1.08991 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46799 * 240.00125 * 2 1 3 27 27 H 1.08996 * 109.47429 * 120.00213 * 2 1 3 28 28 H 0.97000 * 120.00423 * 264.99683 * 5 3 2 29 29 H 0.96995 * 120.00322 * 180.02562 * 9 8 6 30 30 H 1.08001 * 120.00399 * 359.97438 * 15 14 3 31 31 H 1.08005 * 119.99786 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47152 * 359.97438 * 18 17 16 33 33 H 1.08996 * 109.47407 * 60.00310 * 19 18 17 34 34 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47075 * 299.99352 * 19 18 17 36 36 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47194 * 299.99742 * 20 18 17 38 38 H 1.08992 * 109.47399 * 59.99914 * 20 18 17 39 39 H 1.07999 * 120.00408 * 179.73021 * 21 17 16 40 40 H 1.07996 * 120.00391 * 180.25058 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4156 2.6735 -1.3688 7 1 -0.2742 2.6446 -0.5382 8 6 0.0485 3.2945 -2.5547 9 7 0.8894 3.3302 -3.5666 10 14 -1.6384 4.0809 -2.7139 11 1 -2.3881 3.9058 -1.4441 12 1 -1.4841 5.5295 -3.0025 13 1 -2.3843 3.4321 -3.8221 14 6 3.5419 1.4443 0.1238 15 6 4.1342 1.6871 1.3490 16 6 5.5118 1.6882 1.4626 17 6 6.2972 1.4470 0.3510 18 6 7.7992 1.4488 0.4748 19 6 8.3849 2.5271 -0.4391 20 6 8.3463 0.0801 0.0644 21 6 5.7051 1.2100 -0.8755 22 6 4.3274 1.2037 -0.9881 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2719 2.1232 -1.9978 29 1 0.6330 3.7645 -4.3952 30 1 3.5206 1.8760 2.2175 31 1 5.9745 1.8783 2.4198 32 1 8.0784 1.6574 1.5076 33 1 7.9952 3.5021 -0.1468 34 1 9.4713 2.5280 -0.3499 35 1 8.1058 2.3188 -1.4720 36 1 9.4326 0.0813 0.1544 37 1 7.9290 -0.6881 0.7155 38 1 8.0671 -0.1280 -0.9684 39 1 6.3188 1.0259 -1.7449 40 1 3.8646 1.0146 -1.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310041314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:37 Heat of formation + Delta-G solvation = 9.348229 kcal Electronic energy + Delta-G solvation = -17879.128931 eV Core-core repulsion = 15271.968865 eV Total energy + Delta-G solvation = -2607.160066 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41360 -36.60099 -34.53229 -32.31267 -30.57988 -29.97662 -29.13889 -27.14652 -25.57397 -23.11075 -22.61554 -21.96247 -20.04774 -19.38217 -17.36905 -15.96305 -15.42136 -14.73810 -14.43723 -13.96224 -13.77953 -13.53646 -13.52337 -13.19232 -12.99896 -12.61055 -12.38544 -12.28914 -12.01566 -11.52518 -11.15222 -11.10596 -10.92948 -10.85734 -10.81803 -10.62734 -10.38638 -10.25545 -10.10548 -9.89442 -9.46807 -8.90969 -8.47592 -8.03998 -6.94042 -5.75272 -3.02492 1.78294 1.84755 3.43845 3.49792 3.51723 4.18141 4.60999 4.77668 4.88031 5.21964 5.29636 5.39002 5.46885 5.49519 5.55975 5.59514 5.71879 5.80257 5.81730 5.86841 5.96940 5.99580 6.04515 6.10247 6.22456 6.25203 6.33356 6.43743 6.52259 6.58328 6.65310 6.74362 6.89840 6.96923 6.99168 7.26724 7.32008 7.46091 7.72809 8.43335 9.54581 10.11762 10.47322 11.47647 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.005328 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.821132 B = 5253.677418 C = 5787.893511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.210 3.790 4 H 0.054 0.946 5 N -0.720 5.720 6 C -0.231 4.231 7 H 0.074 0.926 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.903 3.097 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.069 4.069 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.053 4.053 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.115 4.115 22 C -0.102 4.102 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.385 0.615 29 H 0.254 0.746 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.102 -5.710 8.519 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.100 3.900 4 H 0.072 0.928 5 N -0.361 5.361 6 C -0.363 4.363 7 H 0.091 0.909 8 C -0.210 4.210 9 N -0.581 5.581 10 Si 0.734 3.266 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.140 4.140 17 C -0.094 4.094 18 C -0.071 4.071 19 C -0.201 4.201 20 C -0.200 4.200 21 C -0.133 4.133 22 C -0.120 4.120 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.220 0.780 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.915 -5.624 8.531 15.697 hybrid contribution -0.776 0.509 -0.428 1.022 sum 11.139 -5.115 8.102 14.693 Atomic orbital electron populations 1.21803 0.95898 0.99535 1.03259 1.22121 0.96561 0.98495 0.99821 1.19265 0.87141 0.92251 0.91370 0.92819 1.42520 1.16644 1.66008 1.10975 1.19289 0.91625 1.27428 0.97910 0.90853 1.24719 0.98158 1.01683 0.96468 1.69665 1.35153 1.49280 1.04023 0.86173 0.84047 0.78936 0.77425 1.20523 1.21949 1.21932 1.20411 0.97053 0.96546 0.92954 1.20969 0.94410 1.01000 0.97251 1.20892 0.93619 1.01817 0.97671 1.19694 0.94574 1.01426 0.93719 1.20058 0.91373 0.95697 0.99999 1.21860 0.99877 0.98569 0.99840 1.21849 1.00072 0.96299 1.01792 1.20890 0.94662 1.01014 0.96701 1.21048 0.93114 0.98931 0.98893 0.94137 0.89652 0.94936 0.92728 0.94067 0.78035 0.93604 0.86538 0.86910 0.90987 0.92525 0.92832 0.92360 0.92822 0.92674 0.92418 0.86755 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.18 37.16 0.34 -2.43 16 2 C -0.13 -2.41 5.59 -26.73 -0.15 -2.56 16 3 C 0.21 4.27 2.64 -69.08 -0.18 4.09 16 4 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 5 N -0.72 -17.82 5.02 -54.55 -0.27 -18.10 16 6 C -0.23 -6.26 7.75 -15.06 -0.12 -6.38 16 7 H 0.07 1.93 7.32 -52.48 -0.38 1.55 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 10 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C -0.07 -1.26 4.95 -104.62 -0.52 -1.78 16 15 C -0.12 -1.89 9.67 -39.59 -0.38 -2.28 16 16 C -0.12 -1.75 9.67 -39.59 -0.38 -2.13 16 17 C -0.09 -1.32 4.78 -104.62 -0.50 -1.82 16 18 C -0.05 -0.59 3.09 -91.77 -0.28 -0.87 16 19 C -0.14 -1.53 9.00 37.16 0.33 -1.19 16 20 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 21 C -0.11 -1.77 8.71 -39.58 -0.34 -2.11 16 22 C -0.10 -1.82 9.06 -39.58 -0.36 -2.18 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.87 5.99 -51.93 -0.31 1.56 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.38 10.13 6.06 -40.82 -0.25 9.88 16 29 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 31 H 0.11 1.34 7.95 -52.48 -0.42 0.92 16 32 H 0.07 0.73 7.88 -51.93 -0.41 0.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.64 7.37 -51.93 -0.38 0.25 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.58 7.40 -51.93 -0.38 0.20 16 39 H 0.11 1.57 7.10 -52.49 -0.37 1.19 16 40 H 0.12 2.37 6.91 -52.49 -0.36 2.01 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -29.25 320.97 -8.66 -37.91 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.62 Total: 8.59 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.31 Total: -23.23 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.45 Total: -45.36 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.25 -8.66 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.261 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds