Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46996 * 2 1 4 4 H 1.08991 * 109.46961 * 55.00264 * 3 2 1 5 5 N 1.46495 * 109.46900 * 294.99956 * 3 2 1 6 6 C 1.36939 * 120.00126 * 85.00469 * 5 3 2 7 7 H 1.08006 * 119.99463 * 359.97438 * 6 5 3 8 8 C 1.38808 * 120.00332 * 179.97438 * 6 5 3 9 9 N 1.31618 * 120.00329 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99961 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47330 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47285 * 119.99987 * 10 8 6 13 13 H 1.48501 * 109.46761 * 240.00092 * 10 8 6 14 14 C 1.50703 * 109.46796 * 175.00235 * 3 2 1 15 15 C 1.38231 * 119.99899 * 260.00190 * 14 3 2 16 16 C 1.38234 * 119.99931 * 179.97438 * 15 14 3 17 17 C 1.38232 * 120.00080 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00112 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46966 * 240.00114 * 18 17 16 20 20 C 1.53000 * 109.46912 * 120.00202 * 18 17 16 21 21 C 1.38237 * 120.00084 * 0.25709 * 17 16 15 22 22 C 1.38236 * 119.99852 * 359.49003 * 21 17 16 23 23 H 1.09001 * 109.46799 * 299.99875 * 1 2 3 24 24 H 1.09000 * 109.47070 * 59.99469 * 1 2 3 25 25 H 1.08991 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46799 * 240.00125 * 2 1 3 27 27 H 1.08996 * 109.47429 * 120.00213 * 2 1 3 28 28 H 0.97000 * 120.00423 * 264.99683 * 5 3 2 29 29 H 0.96995 * 120.00322 * 180.02562 * 9 8 6 30 30 H 1.08001 * 120.00399 * 359.97438 * 15 14 3 31 31 H 1.08005 * 119.99786 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47152 * 359.97438 * 18 17 16 33 33 H 1.08996 * 109.47407 * 60.00310 * 19 18 17 34 34 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47075 * 299.99352 * 19 18 17 36 36 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47194 * 299.99742 * 20 18 17 38 38 H 1.08992 * 109.47399 * 59.99914 * 20 18 17 39 39 H 1.07999 * 120.00408 * 179.73021 * 21 17 16 40 40 H 1.07996 * 120.00391 * 180.25058 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4156 2.6735 -1.3688 7 1 -0.2742 2.6446 -0.5382 8 6 0.0485 3.2945 -2.5547 9 7 0.8894 3.3302 -3.5666 10 14 -1.6384 4.0809 -2.7139 11 1 -2.3881 3.9058 -1.4441 12 1 -1.4841 5.5295 -3.0025 13 1 -2.3843 3.4321 -3.8221 14 6 3.5419 1.4443 0.1238 15 6 4.1342 1.6871 1.3490 16 6 5.5118 1.6882 1.4626 17 6 6.2972 1.4470 0.3510 18 6 7.7992 1.4488 0.4748 19 6 8.3849 2.5271 -0.4391 20 6 8.3463 0.0801 0.0644 21 6 5.7051 1.2100 -0.8755 22 6 4.3274 1.2037 -0.9881 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2719 2.1232 -1.9978 29 1 0.6330 3.7645 -4.3952 30 1 3.5206 1.8760 2.2175 31 1 5.9745 1.8783 2.4198 32 1 8.0784 1.6574 1.5076 33 1 7.9952 3.5021 -0.1468 34 1 9.4713 2.5280 -0.3499 35 1 8.1058 2.3188 -1.4720 36 1 9.4326 0.0813 0.1544 37 1 7.9290 -0.6881 0.7155 38 1 8.0671 -0.1280 -0.9684 39 1 6.3188 1.0259 -1.7449 40 1 3.8646 1.0146 -1.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310041314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = -5.421822 kcal Electronic energy + Delta-G solvation = -17879.769408 eV Core-core repulsion = 15271.968865 eV Total energy + Delta-G solvation = -2607.800544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66104 -38.04498 -35.81650 -34.19171 -31.91739 -31.50131 -30.70990 -27.93381 -27.18540 -24.95569 -23.82503 -23.31155 -21.37805 -20.64794 -19.30571 -17.31556 -16.93892 -16.08632 -15.96812 -15.45991 -15.26603 -14.88070 -14.66468 -14.51470 -14.34002 -14.03077 -13.64485 -13.49968 -13.10514 -12.97244 -12.86739 -12.70679 -12.43065 -12.12872 -12.07357 -11.96080 -11.90748 -11.81395 -11.49752 -11.32213 -11.31230 -10.92432 -9.72430 -9.32602 -8.96661 -7.90326 -5.16932 0.53097 0.59626 1.47513 1.47564 1.57322 2.57876 2.93381 3.43818 3.80295 3.87956 4.00319 4.06133 4.21900 4.27626 4.38115 4.44717 4.48280 4.60156 4.65018 4.69176 4.83737 4.84898 4.94178 5.02263 5.03867 5.10119 5.13918 5.21525 5.25907 5.29703 5.39879 5.43410 5.47568 5.54813 5.63420 5.70106 5.81495 5.90331 6.22005 6.31840 7.37904 8.12475 8.37351 9.34058 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.005328 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.821132 B = 5253.677418 C = 5787.893511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.207 3.793 4 H 0.050 0.950 5 N -0.731 5.731 6 C -0.219 4.219 7 H 0.080 0.920 8 C -0.079 4.079 9 N -0.973 5.973 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.297 1.297 13 H -0.296 1.296 14 C -0.093 4.093 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.087 4.087 18 C -0.051 4.051 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.119 4.119 22 C -0.122 4.122 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.373 0.627 29 H 0.248 0.752 30 H 0.133 0.867 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.126 0.874 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.376 -6.155 10.825 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.099 3.901 4 H 0.068 0.932 5 N -0.372 5.372 6 C -0.351 4.351 7 H 0.097 0.903 8 C -0.271 4.271 9 N -0.625 5.625 10 Si 0.795 3.205 11 H -0.189 1.189 12 H -0.225 1.225 13 H -0.224 1.224 14 C -0.094 4.094 15 C -0.140 4.140 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.070 4.070 19 C -0.202 4.202 20 C -0.199 4.199 21 C -0.137 4.137 22 C -0.140 4.140 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.206 0.794 29 H 0.057 0.943 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.187 -6.095 10.892 18.157 hybrid contribution -1.058 0.582 -1.051 1.601 sum 12.129 -5.512 9.841 16.564 Atomic orbital electron populations 1.21729 0.95884 1.00677 1.01812 1.21990 0.96445 0.97293 1.00431 1.19403 0.88991 0.92607 0.89069 0.93166 1.42717 1.15812 1.66294 1.12336 1.19626 0.92319 1.25513 0.97618 0.90255 1.25465 1.01596 1.03485 0.96558 1.69824 1.37030 1.51219 1.04447 0.85181 0.80305 0.77389 0.77645 1.18852 1.22490 1.22363 1.20272 0.95723 0.99086 0.94272 1.21178 0.95613 1.00484 0.96699 1.21277 0.92904 1.00375 0.99137 1.20101 0.96541 0.99237 0.92848 1.20144 0.88990 0.96569 1.01253 1.21864 1.01283 0.97847 0.99165 1.21838 1.01356 0.95366 1.01296 1.21040 0.93644 1.00835 0.98140 1.20959 0.94435 1.00705 0.97939 0.93187 0.93276 0.92590 0.94058 0.91335 0.79402 0.94312 0.84945 0.83647 0.89178 0.93405 0.90640 0.93226 0.90798 0.92782 0.93108 0.85586 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.18 71.98 0.66 -4.61 16 2 C -0.12 -4.47 5.59 30.60 0.17 -4.30 16 3 C 0.21 8.51 2.64 44.25 0.12 8.62 16 4 H 0.05 2.07 7.94 -2.39 -0.02 2.06 16 5 N -0.73 -37.30 5.02 -326.50 -1.64 -38.94 16 6 C -0.22 -12.05 7.75 84.03 0.65 -11.40 16 7 H 0.08 4.19 7.32 -2.91 -0.02 4.16 16 8 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 9 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 10 Si 0.96 46.69 29.55 68.60 2.03 48.72 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 C -0.09 -3.40 4.95 -19.86 -0.10 -3.50 16 15 C -0.12 -3.69 9.67 22.27 0.22 -3.47 16 16 C -0.12 -3.07 9.67 22.27 0.22 -2.86 16 17 C -0.09 -2.25 4.78 -19.87 -0.09 -2.35 16 18 C -0.05 -0.97 3.09 -11.54 -0.04 -1.01 16 19 C -0.14 -2.69 9.00 71.98 0.65 -2.04 16 20 C -0.14 -2.38 9.01 71.98 0.65 -1.73 16 21 C -0.12 -3.61 8.71 22.27 0.19 -3.41 16 22 C -0.12 -4.49 9.06 22.27 0.20 -4.29 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 2.16 5.99 -2.39 -0.01 2.14 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.37 20.63 6.06 -92.71 -0.56 20.07 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.13 3.51 8.04 -2.91 -0.02 3.49 16 31 H 0.15 2.80 7.95 -2.91 -0.02 2.78 16 32 H 0.09 1.44 7.88 -2.39 -0.02 1.42 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.00 7.37 -2.39 -0.02 0.98 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.92 7.40 -2.39 -0.02 0.90 16 39 H 0.13 3.43 7.10 -2.91 -0.02 3.40 16 40 H 0.10 4.07 6.91 -2.91 -0.02 4.05 16 Total: -1.00 -64.02 320.97 5.07 -58.95 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.44 Total: 31.99 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 3.96 Total: -40.48 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -1.35 Total: -99.18 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -64.02 5.07 -58.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.526 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds