Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 6 6 C 1.36931 * 119.99788 * 274.99780 * 5 3 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 3 8 8 C 1.38817 * 119.99680 * 179.72358 * 6 5 3 9 9 N 1.31617 * 119.99873 * 180.27450 * 8 6 5 10 10 Si 1.86800 * 120.00209 * 0.27770 * 8 6 5 11 11 H 1.48498 * 109.47118 * 89.99559 * 10 8 6 12 12 H 1.48499 * 109.47134 * 210.00079 * 10 8 6 13 13 H 1.48507 * 109.46904 * 329.99901 * 10 8 6 14 14 C 1.50696 * 109.47149 * 185.00337 * 3 2 1 15 15 C 1.38239 * 120.00166 * 279.73178 * 14 3 2 16 16 C 1.38239 * 120.00043 * 179.78867 * 15 14 3 17 17 C 1.38234 * 119.99616 * 0.45897 * 16 15 14 18 18 C 1.50703 * 119.99743 * 179.79127 * 17 16 15 19 19 C 1.52999 * 109.47158 * 299.97812 * 18 17 16 20 20 C 1.52991 * 109.47045 * 59.98195 * 18 17 16 21 21 C 1.38232 * 120.00441 * 359.77191 * 17 16 15 22 22 C 1.38233 * 119.99838 * 0.02562 * 21 17 16 23 23 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 26 26 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 27 27 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 28 28 H 0.97000 * 119.99792 * 94.99575 * 5 3 2 29 29 H 0.97000 * 120.00553 * 180.02562 * 9 8 6 30 30 H 1.07992 * 119.99886 * 0.02562 * 15 14 3 31 31 H 1.07997 * 120.00147 * 180.25845 * 16 15 14 32 32 H 1.09001 * 109.47163 * 179.97438 * 18 17 16 33 33 H 1.09007 * 109.46957 * 60.00542 * 19 18 17 34 34 H 1.08998 * 109.47110 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47633 * 300.00442 * 19 18 17 36 36 H 1.09000 * 109.47717 * 60.00163 * 20 18 17 37 37 H 1.08998 * 109.47249 * 180.02562 * 20 18 17 38 38 H 1.09007 * 109.47374 * 299.99644 * 20 18 17 39 39 H 1.08002 * 120.00425 * 179.97438 * 21 17 16 40 40 H 1.08007 * 120.00117 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 7 1.6525 2.0974 1.2520 6 6 0.4157 2.6733 1.3691 7 1 -0.2743 2.6445 0.5387 8 6 0.0465 3.2888 2.5573 9 7 -1.1443 3.8377 2.6717 10 14 1.2396 3.3381 3.9938 11 1 2.0704 4.5657 3.9052 12 1 0.4788 3.3462 5.2691 13 1 2.1180 2.1416 3.9489 14 6 3.5418 1.4444 -0.1239 15 6 4.3275 1.2086 0.9888 16 6 5.7051 1.2060 0.8742 17 6 6.2972 1.4485 -0.3511 18 6 7.7991 1.4502 -0.4751 19 6 8.3849 2.5291 0.4380 20 6 8.3463 0.0819 -0.0641 21 6 5.5117 1.6889 -1.4629 22 6 4.1340 1.6874 -1.3491 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 2.2721 2.1229 1.9979 29 1 -1.4023 4.2681 3.5018 30 1 3.8650 1.0228 1.9468 31 1 6.3189 1.0177 1.7427 32 1 8.0782 1.6577 -1.5082 33 1 8.1059 2.3215 1.4711 34 1 9.4712 2.5301 0.3487 35 1 7.9950 3.5040 0.1452 36 1 7.9290 -0.6867 -0.7146 37 1 9.4326 0.0833 -0.1533 38 1 8.0673 -0.1257 0.9690 39 1 5.9742 1.8788 -2.4202 40 1 3.5202 1.8757 -2.2177 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310041315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 13.562376 kcal Electronic energy + Delta-G solvation = -17962.907441 eV Core-core repulsion = 15355.930114 eV Total energy + Delta-G solvation = -2606.977327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56173 -36.76543 -34.65749 -32.29276 -30.76054 -30.23443 -29.57679 -27.23863 -25.72220 -22.88983 -22.68841 -22.00088 -20.12207 -19.54878 -17.82415 -16.09533 -15.50882 -14.86259 -14.54161 -14.07456 -13.83205 -13.63326 -13.61232 -13.37117 -13.03779 -12.56502 -12.49521 -12.45388 -12.18601 -11.64976 -11.39969 -11.18799 -11.07213 -10.96873 -10.89603 -10.62766 -10.50489 -10.30754 -10.15319 -9.94450 -9.43818 -8.93429 -8.62489 -8.18074 -7.25807 -5.75955 -3.10079 1.64208 1.69697 3.37365 3.41043 3.45935 4.03805 4.60081 4.67147 4.77574 5.12368 5.14955 5.25518 5.31636 5.37927 5.43031 5.50482 5.56166 5.67118 5.71923 5.73139 5.87790 5.89515 5.93042 6.01411 6.12933 6.14661 6.19970 6.30062 6.39321 6.49274 6.60001 6.67991 6.77131 6.83910 6.88007 7.14131 7.31152 7.33810 8.00824 8.42923 9.21306 9.94042 10.14396 11.42116 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.006206 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.889474 B = 4510.449322 C = 5220.477184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.215 3.785 4 H 0.063 0.937 5 N -0.744 5.744 6 C -0.237 4.237 7 H 0.095 0.905 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.879 3.121 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.278 1.278 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.092 4.092 18 C -0.053 4.053 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.119 4.119 22 C -0.114 4.114 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.361 0.639 29 H 0.259 0.741 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.006 -6.954 -6.761 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.106 3.894 4 H 0.081 0.919 5 N -0.388 5.388 6 C -0.367 4.367 7 H 0.112 0.888 8 C -0.191 4.191 9 N -0.581 5.581 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.204 1.204 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.133 4.133 17 C -0.092 4.092 18 C -0.072 4.072 19 C -0.202 4.202 20 C -0.200 4.200 21 C -0.137 4.137 22 C -0.133 4.133 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.195 0.805 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.753 -6.851 -6.788 19.330 hybrid contribution 0.715 0.117 1.166 1.373 sum 17.468 -6.734 -5.622 19.547 Atomic orbital electron populations 1.21813 0.95354 0.99627 1.03793 1.22088 0.96957 0.97937 0.99898 1.19246 0.87006 0.92420 0.90764 0.91872 1.42869 1.16774 1.67810 1.11333 1.19082 0.90500 1.27367 0.99711 0.88757 1.24634 0.96416 1.00483 0.97549 1.69688 1.19198 1.42597 1.26643 0.86632 0.81055 0.77809 0.83534 1.21125 1.21773 1.20427 1.20425 0.97016 0.96678 0.93041 1.21002 0.93273 0.99845 0.98723 1.20883 0.94541 1.01007 0.96864 1.19715 0.94695 1.01166 0.93669 1.20068 0.91239 0.95745 1.00136 1.21861 1.00006 0.98558 0.99731 1.21851 1.00173 0.96270 1.01747 1.20936 0.93613 1.01395 0.97746 1.21000 0.94450 1.00530 0.97280 0.93873 0.94910 0.89343 0.93778 0.92887 0.80481 0.93098 0.86279 0.86721 0.90833 0.92464 0.92725 0.92498 0.92600 0.92734 0.92486 0.86672 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.18 37.16 0.34 -2.47 16 2 C -0.13 -2.31 5.59 -26.73 -0.15 -2.46 16 3 C 0.21 4.20 2.64 -69.08 -0.18 4.02 16 4 H 0.06 1.28 7.94 -51.93 -0.41 0.86 16 5 N -0.74 -17.44 4.82 -54.55 -0.26 -17.71 16 6 C -0.24 -6.49 8.24 -15.06 -0.12 -6.61 16 7 H 0.09 2.75 7.55 -52.49 -0.40 2.35 16 8 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 9 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 10 Si 0.88 22.17 27.74 -169.99 -4.72 17.45 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 H -0.28 -6.59 6.51 56.52 0.37 -6.22 16 14 C -0.07 -1.22 4.96 -104.62 -0.52 -1.74 16 15 C -0.11 -1.84 9.06 -39.58 -0.36 -2.20 16 16 C -0.11 -1.65 8.71 -39.58 -0.34 -1.99 16 17 C -0.09 -1.21 4.78 -104.62 -0.50 -1.71 16 18 C -0.05 -0.55 3.09 -91.77 -0.28 -0.83 16 19 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 20 C -0.14 -1.32 9.01 37.15 0.33 -0.98 16 21 C -0.12 -1.59 9.67 -39.59 -0.38 -1.98 16 22 C -0.11 -1.73 9.67 -39.58 -0.38 -2.11 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.99 5.99 -51.93 -0.31 1.68 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.36 8.43 3.91 -40.82 -0.16 8.27 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 30 H 0.12 2.08 6.90 -52.49 -0.36 1.72 16 31 H 0.11 1.44 7.10 -52.49 -0.37 1.07 16 32 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 33 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 39 H 0.12 1.27 7.95 -52.49 -0.42 0.85 16 40 H 0.12 1.63 8.04 -52.48 -0.42 1.21 16 LS Contribution 317.83 15.07 4.79 4.79 Total: -1.00 -29.98 317.83 -8.31 -38.29 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.58 Total: 7.52 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.31 Total: -22.10 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.51 Total: -45.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.98 -8.31 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.851 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds