Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 6 6 C 1.36931 * 119.99788 * 274.99780 * 5 3 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 3 8 8 C 1.38817 * 119.99680 * 179.72358 * 6 5 3 9 9 N 1.31617 * 119.99873 * 180.27450 * 8 6 5 10 10 Si 1.86800 * 120.00209 * 0.27770 * 8 6 5 11 11 H 1.48498 * 109.47118 * 89.99559 * 10 8 6 12 12 H 1.48499 * 109.47134 * 210.00079 * 10 8 6 13 13 H 1.48507 * 109.46904 * 329.99901 * 10 8 6 14 14 C 1.50696 * 109.47149 * 185.00337 * 3 2 1 15 15 C 1.38239 * 120.00166 * 279.73178 * 14 3 2 16 16 C 1.38239 * 120.00043 * 179.78867 * 15 14 3 17 17 C 1.38234 * 119.99616 * 0.45897 * 16 15 14 18 18 C 1.50703 * 119.99743 * 179.79127 * 17 16 15 19 19 C 1.52999 * 109.47158 * 299.97812 * 18 17 16 20 20 C 1.52991 * 109.47045 * 59.98195 * 18 17 16 21 21 C 1.38232 * 120.00441 * 359.77191 * 17 16 15 22 22 C 1.38233 * 119.99838 * 0.02562 * 21 17 16 23 23 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 26 26 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 27 27 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 28 28 H 0.97000 * 119.99792 * 94.99575 * 5 3 2 29 29 H 0.97000 * 120.00553 * 180.02562 * 9 8 6 30 30 H 1.07992 * 119.99886 * 0.02562 * 15 14 3 31 31 H 1.07997 * 120.00147 * 180.25845 * 16 15 14 32 32 H 1.09001 * 109.47163 * 179.97438 * 18 17 16 33 33 H 1.09007 * 109.46957 * 60.00542 * 19 18 17 34 34 H 1.08998 * 109.47110 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47633 * 300.00442 * 19 18 17 36 36 H 1.09000 * 109.47717 * 60.00163 * 20 18 17 37 37 H 1.08998 * 109.47249 * 180.02562 * 20 18 17 38 38 H 1.09007 * 109.47374 * 299.99644 * 20 18 17 39 39 H 1.08002 * 120.00425 * 179.97438 * 21 17 16 40 40 H 1.08007 * 120.00117 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 7 1.6525 2.0974 1.2520 6 6 0.4157 2.6733 1.3691 7 1 -0.2743 2.6445 0.5387 8 6 0.0465 3.2888 2.5573 9 7 -1.1443 3.8377 2.6717 10 14 1.2396 3.3381 3.9938 11 1 2.0704 4.5657 3.9052 12 1 0.4788 3.3462 5.2691 13 1 2.1180 2.1416 3.9489 14 6 3.5418 1.4444 -0.1239 15 6 4.3275 1.2086 0.9888 16 6 5.7051 1.2060 0.8742 17 6 6.2972 1.4485 -0.3511 18 6 7.7991 1.4502 -0.4751 19 6 8.3849 2.5291 0.4380 20 6 8.3463 0.0819 -0.0641 21 6 5.5117 1.6889 -1.4629 22 6 4.1340 1.6874 -1.3491 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 2.2721 2.1229 1.9979 29 1 -1.4023 4.2681 3.5018 30 1 3.8650 1.0228 1.9468 31 1 6.3189 1.0177 1.7427 32 1 8.0782 1.6577 -1.5082 33 1 8.1059 2.3215 1.4711 34 1 9.4712 2.5301 0.3487 35 1 7.9950 3.5040 0.1452 36 1 7.9290 -0.6867 -0.7146 37 1 9.4326 0.0833 -0.1533 38 1 8.0673 -0.1257 0.9690 39 1 5.9742 1.8788 -2.4202 40 1 3.5202 1.8757 -2.2177 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310041315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = -2.258927 kcal Electronic energy + Delta-G solvation = -17963.593505 eV Core-core repulsion = 15355.930114 eV Total energy + Delta-G solvation = -2607.663390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72363 -38.17196 -35.86687 -34.22101 -32.24461 -31.70249 -30.92128 -27.94338 -27.25528 -24.64655 -23.85923 -23.34443 -21.46389 -20.74013 -19.76167 -17.32920 -17.00430 -16.24777 -15.93808 -15.54537 -15.24343 -14.91476 -14.70988 -14.57720 -14.41461 -14.09705 -13.82499 -13.54973 -13.27182 -13.12017 -12.95025 -12.74194 -12.43149 -12.12882 -12.11100 -12.02249 -11.92630 -11.77719 -11.52778 -11.40745 -11.34788 -10.96782 -9.76675 -9.42639 -9.23379 -7.98812 -5.29924 0.48428 0.55371 1.34756 1.37464 1.43926 2.48862 2.88218 3.32343 3.64987 3.76702 3.89549 3.98049 4.17556 4.22904 4.36753 4.40664 4.44147 4.57788 4.62167 4.64933 4.78224 4.83843 4.90964 5.00469 5.02799 5.07570 5.11504 5.18451 5.22673 5.25708 5.37640 5.42365 5.43075 5.59771 5.68370 5.77302 5.79426 5.86728 6.17239 6.25688 7.10309 7.86202 8.05736 9.22587 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.006206 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.889474 B = 4510.449322 C = 5220.477184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.212 3.788 4 H 0.052 0.948 5 N -0.747 5.747 6 C -0.210 4.210 7 H 0.067 0.933 8 C -0.064 4.064 9 N -0.984 5.984 10 Si 0.941 3.059 11 H -0.284 1.284 12 H -0.297 1.297 13 H -0.256 1.256 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.117 4.117 17 C -0.086 4.086 18 C -0.052 4.052 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.119 4.119 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.363 0.637 29 H 0.255 0.745 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.145 0.855 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.377 -8.020 -7.647 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.104 3.896 4 H 0.070 0.930 5 N -0.391 5.391 6 C -0.341 4.341 7 H 0.085 0.915 8 C -0.255 4.255 9 N -0.635 5.635 10 Si 0.769 3.231 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.180 1.180 14 C -0.094 4.094 15 C -0.146 4.146 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.071 4.071 19 C -0.202 4.202 20 C -0.199 4.199 21 C -0.135 4.135 22 C -0.138 4.138 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.197 0.803 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.162 0.838 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.172 -7.957 -7.707 23.013 hybrid contribution -0.270 0.398 1.291 1.377 sum 19.901 -7.559 -6.417 22.235 Atomic orbital electron populations 1.21722 0.96257 1.00535 1.01623 1.21968 0.95946 0.96989 1.01084 1.19364 0.89166 0.92647 0.88411 0.93012 1.42904 1.15317 1.67838 1.13061 1.19023 0.91256 1.25376 0.98402 0.91540 1.25332 0.98160 1.01483 1.00495 1.69853 1.21483 1.44909 1.27267 0.85612 0.79095 0.78520 0.79832 1.21028 1.22338 1.18049 1.20204 0.95263 0.99453 0.94458 1.20987 0.94449 1.01162 0.97985 1.21071 0.93653 1.00586 0.98211 1.20113 0.96498 0.99037 0.92947 1.20147 0.89048 0.96604 1.01259 1.21865 1.01252 0.97816 0.99223 1.21841 1.01325 0.95344 1.01379 1.21283 0.92870 1.00159 0.99187 1.21180 0.95613 1.00194 0.96786 0.93900 0.92488 0.93528 0.90965 0.93129 0.80280 0.93584 0.87675 0.85123 0.89347 0.92982 0.90790 0.93356 0.92824 0.90929 0.92903 0.83769 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.18 71.98 0.66 -4.78 16 2 C -0.12 -4.21 5.59 30.59 0.17 -4.04 16 3 C 0.21 8.24 2.64 44.24 0.12 8.36 16 4 H 0.05 2.11 7.94 -2.39 -0.02 2.09 16 5 N -0.75 -35.29 4.82 -326.49 -1.57 -36.86 16 6 C -0.21 -11.81 8.24 84.04 0.69 -11.12 16 7 H 0.07 4.06 7.55 -2.91 -0.02 4.04 16 8 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 9 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 10 Si 0.94 46.53 27.74 68.60 1.90 48.43 16 11 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 13 H -0.26 -11.51 6.51 99.48 0.65 -10.87 16 14 C -0.09 -3.12 4.96 -19.87 -0.10 -3.21 16 15 C -0.13 -4.11 9.06 22.27 0.20 -3.91 16 16 C -0.12 -3.10 8.71 22.27 0.19 -2.91 16 17 C -0.09 -1.98 4.78 -19.87 -0.09 -2.07 16 18 C -0.05 -0.88 3.09 -11.54 -0.04 -0.91 16 19 C -0.14 -2.34 9.01 71.98 0.65 -1.69 16 20 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 21 C -0.12 -2.76 9.67 22.27 0.22 -2.54 16 22 C -0.12 -3.36 9.67 22.27 0.22 -3.14 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 2.14 5.99 -2.38 -0.01 2.13 16 26 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.36 16.83 3.91 -92.71 -0.36 16.46 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.11 3.61 6.90 -2.91 -0.02 3.59 16 31 H 0.13 2.96 7.10 -2.91 -0.02 2.94 16 32 H 0.09 1.26 7.88 -2.39 -0.02 1.25 16 33 H 0.05 0.89 7.39 -2.38 -0.02 0.88 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.82 7.39 -2.38 -0.02 0.81 16 39 H 0.14 2.54 7.95 -2.91 -0.02 2.51 16 40 H 0.13 3.29 8.04 -2.91 -0.02 3.27 16 Total: -1.00 -66.03 317.83 5.21 -60.82 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.58 Total: 27.45 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 4.00 Total: -36.72 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -1.27 Total: -99.97 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -66.03 5.21 -60.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.560 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds