Wall clock time and date at job start Mon Mar 30 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 H 1.08998 * 109.46788 * 304.99599 * 3 2 1 5 5 C 1.52999 * 109.47312 * 64.99883 * 3 2 1 6 6 C 1.52996 * 109.47227 * 184.99995 * 3 2 1 7 7 C 1.53001 * 109.47414 * 175.00040 * 6 3 2 8 8 N 1.46503 * 109.47396 * 180.02562 * 7 6 3 9 9 C 1.39684 * 120.00074 * 179.97438 * 8 7 6 10 10 C 1.39339 * 119.94717 * 359.72473 * 9 8 7 11 11 C 1.38481 * 120.41537 * 179.72293 * 10 9 8 12 12 C 1.37685 * 120.32587 * 0.54997 * 11 10 9 13 13 C 1.40744 * 119.89498 * 359.73045 * 12 11 10 14 14 C 1.41409 * 120.20699 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99874 * 204.44583 * 14 13 12 16 16 C 1.39933 * 120.00429 * 24.44426 * 14 13 12 17 17 N 1.30831 * 119.99717 * 17.89426 * 16 14 13 18 18 Si 1.86798 * 120.00316 * 197.89702 * 16 14 13 19 19 H 1.48504 * 109.47132 * 89.99896 * 18 16 14 20 20 H 1.48494 * 109.47230 * 210.00066 * 18 16 14 21 21 H 1.48505 * 109.46881 * 329.99954 * 18 16 14 22 22 C 1.38271 * 119.94822 * 179.97438 * 9 8 7 23 23 H 1.09003 * 109.46732 * 60.00144 * 1 2 3 24 24 H 1.08997 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46918 * 300.00652 * 1 2 3 26 26 H 1.09001 * 109.46918 * 239.99348 * 2 1 3 27 27 H 1.09003 * 109.46732 * 119.99856 * 2 1 3 28 28 H 1.09005 * 109.46742 * 299.99982 * 5 3 2 29 29 H 1.08997 * 109.46899 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47030 * 59.99820 * 5 3 2 31 31 H 1.08999 * 109.47386 * 294.99918 * 6 3 2 32 32 H 1.08998 * 109.47284 * 54.99696 * 6 3 2 33 33 H 1.09007 * 109.46890 * 299.99634 * 7 6 3 34 34 H 1.08998 * 109.47176 * 59.99589 * 7 6 3 35 35 H 0.96998 * 119.99840 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.78937 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.83431 * 180.27880 * 11 10 9 38 38 H 1.08001 * 120.05006 * 179.74594 * 12 11 10 39 39 H 0.96992 * 119.99969 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.16719 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 7 5.5246 2.8865 -0.3721 9 6 6.2135 4.0949 -0.5002 10 6 5.5104 5.2978 -0.5185 11 6 6.1839 6.5018 -0.6392 12 6 7.5558 6.5224 -0.7540 13 6 8.2789 5.3150 -0.7429 14 6 9.6881 5.3285 -0.8597 15 1 10.2067 4.4612 -1.2408 16 6 10.4107 6.4657 -0.4818 17 7 9.8573 7.3659 0.2896 18 14 12.1655 6.6984 -1.0785 19 1 12.1564 7.4370 -2.3668 20 1 12.9328 7.4722 -0.0698 21 1 12.8022 5.3710 -1.2734 22 6 7.5915 4.0953 -0.6138 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5490 2.1253 1.3968 29 1 1.9983 3.1543 1.3070 30 1 2.0699 1.5875 2.1492 31 1 4.0030 0.9835 0.7596 32 1 3.8571 0.8799 -1.0113 33 1 3.6265 3.3456 -1.1366 34 1 3.7724 3.4492 0.6344 35 1 6.0129 2.0484 -0.3640 36 1 4.4338 5.2914 -0.4330 37 1 5.6299 7.4289 -0.6479 38 1 8.0762 7.4637 -0.8520 39 1 10.3580 8.1543 0.5513 40 1 8.1371 3.1634 -0.6033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313438623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:03 Heat of formation + Delta-G solvation = -12.392102 kcal Electronic energy + Delta-G solvation = -17162.388709 eV Core-core repulsion = 14554.285911 eV Total energy + Delta-G solvation = -2608.102798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.13716 -37.19313 -34.85663 -33.12672 -31.08698 -29.69825 -28.57650 -26.66216 -25.19048 -24.66535 -22.03230 -20.68839 -19.92396 -19.88442 -17.25339 -15.58972 -15.48431 -15.20799 -14.98082 -14.50105 -14.28762 -13.79528 -13.52151 -12.97499 -12.71080 -12.57746 -12.07670 -12.04557 -12.01641 -11.65338 -11.56491 -11.32117 -11.10155 -10.91178 -10.71456 -10.64154 -10.53208 -10.39050 -10.32946 -9.70820 -9.26495 -9.15383 -8.66094 -7.33976 -6.67041 -6.14791 -4.26796 2.89230 3.12278 3.15956 3.27072 3.42242 3.99939 4.22578 4.69576 4.74713 4.76518 4.87881 5.13577 5.28831 5.37757 5.46955 5.53442 5.63903 5.73777 5.82006 5.87342 5.89188 5.91847 6.02156 6.13309 6.15730 6.35328 6.37629 6.40969 6.60278 7.08279 7.12066 7.16219 7.39397 7.45796 7.84499 7.96801 8.19112 8.30060 8.56234 8.70782 8.83972 9.04541 9.17218 10.29154 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.058030 B = 0.003563 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.396629 B = 7857.371603 C = 8157.750021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.126 4.126 7 C 0.136 3.864 8 N -0.765 5.765 9 C 0.224 3.776 10 C -0.301 4.301 11 C -0.075 4.075 12 C -0.200 4.200 13 C 0.141 3.859 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.290 4.290 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.387 0.613 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.278 0.722 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 -9.282 0.175 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.164 4.164 7 C 0.011 3.989 8 N -0.398 5.398 9 C 0.125 3.875 10 C -0.325 4.325 11 C -0.094 4.094 12 C -0.221 4.221 13 C 0.138 3.862 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.314 4.314 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.219 0.781 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.379 -8.982 0.324 15.298 hybrid contribution 0.969 -0.123 -0.138 0.986 sum -11.410 -9.105 0.186 14.599 Atomic orbital electron populations 1.21825 0.96039 1.01313 1.01928 1.21573 0.95754 0.96454 1.01902 1.21089 0.94917 0.96059 0.98690 0.91057 1.21954 1.00962 1.01027 0.96969 1.21823 0.95195 0.97165 1.02168 1.21107 0.82180 0.95500 1.00158 1.44453 1.04428 1.05939 1.85005 1.17487 0.90992 0.84748 0.94248 1.19862 0.96712 0.91639 1.24241 1.20441 0.94755 0.95162 0.99083 1.21171 0.92114 0.98766 1.10004 1.17338 0.92870 0.90347 0.85641 1.19551 0.91801 0.99701 1.38456 0.90668 1.25891 1.00438 0.95036 0.92650 1.69866 1.38451 1.09004 1.24482 0.86357 0.81886 0.79322 0.79355 1.19340 1.20428 1.18724 1.20398 0.91148 0.97565 1.22306 0.92803 0.93057 0.92485 0.92101 0.92078 0.92708 0.92114 0.92762 0.91664 0.91727 0.93548 0.93114 0.78075 0.89751 0.89694 0.86786 0.91081 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.17 16 3 C -0.09 -0.88 2.39 -90.62 -0.22 -1.09 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.49 8.70 37.16 0.32 -1.17 16 6 C -0.13 -1.46 4.80 -26.73 -0.13 -1.59 16 7 C 0.14 2.07 4.66 -4.04 -0.02 2.05 16 8 N -0.76 -14.24 5.73 -58.68 -0.34 -14.57 16 9 C 0.22 5.23 6.64 -83.86 -0.56 4.67 16 10 C -0.30 -7.11 9.32 -39.08 -0.36 -7.48 16 11 C -0.08 -1.87 10.01 -39.69 -0.40 -2.26 16 12 C -0.20 -5.46 8.70 -38.84 -0.34 -5.79 16 13 C 0.14 3.93 5.57 -106.85 -0.60 3.33 16 14 C -0.47 -12.80 9.05 -37.74 -0.34 -13.14 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 17 N -0.79 -21.17 10.96 55.55 0.61 -20.56 16 18 Si 0.91 19.18 29.60 -169.99 -5.03 14.15 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.29 -7.45 9.63 -38.68 -0.37 -7.82 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 29 H 0.06 0.66 6.57 -51.93 -0.34 0.31 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 35 H 0.39 6.55 8.48 -40.82 -0.35 6.20 16 36 H 0.08 1.80 6.70 -52.49 -0.35 1.45 16 37 H 0.08 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.11 3.19 6.15 -52.49 -0.32 2.87 16 39 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -28.64 320.08 -9.38 -38.02 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.56 Total: 8.52 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -2.88 Total: -30.37 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.27 Total: -35.14 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.64 -9.38 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.627 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds