Wall clock time and date at job start Mon Mar 30 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 H 1.08998 * 109.46788 * 304.99599 * 3 2 1 5 5 C 1.52999 * 109.47312 * 64.99883 * 3 2 1 6 6 C 1.52996 * 109.47227 * 184.99995 * 3 2 1 7 7 C 1.53001 * 109.47414 * 175.00040 * 6 3 2 8 8 N 1.46503 * 109.47396 * 180.02562 * 7 6 3 9 9 C 1.39684 * 120.00074 * 179.97438 * 8 7 6 10 10 C 1.39339 * 119.94717 * 359.72473 * 9 8 7 11 11 C 1.38481 * 120.41537 * 179.72293 * 10 9 8 12 12 C 1.37685 * 120.32587 * 0.54997 * 11 10 9 13 13 C 1.40744 * 119.89498 * 359.73045 * 12 11 10 14 14 C 1.41409 * 120.20699 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99874 * 204.44583 * 14 13 12 16 16 C 1.39933 * 120.00429 * 24.44426 * 14 13 12 17 17 N 1.30831 * 119.99717 * 17.89426 * 16 14 13 18 18 Si 1.86798 * 120.00316 * 197.89702 * 16 14 13 19 19 H 1.48504 * 109.47132 * 89.99896 * 18 16 14 20 20 H 1.48494 * 109.47230 * 210.00066 * 18 16 14 21 21 H 1.48505 * 109.46881 * 329.99954 * 18 16 14 22 22 C 1.38271 * 119.94822 * 179.97438 * 9 8 7 23 23 H 1.09003 * 109.46732 * 60.00144 * 1 2 3 24 24 H 1.08997 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46918 * 300.00652 * 1 2 3 26 26 H 1.09001 * 109.46918 * 239.99348 * 2 1 3 27 27 H 1.09003 * 109.46732 * 119.99856 * 2 1 3 28 28 H 1.09005 * 109.46742 * 299.99982 * 5 3 2 29 29 H 1.08997 * 109.46899 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47030 * 59.99820 * 5 3 2 31 31 H 1.08999 * 109.47386 * 294.99918 * 6 3 2 32 32 H 1.08998 * 109.47284 * 54.99696 * 6 3 2 33 33 H 1.09007 * 109.46890 * 299.99634 * 7 6 3 34 34 H 1.08998 * 109.47176 * 59.99589 * 7 6 3 35 35 H 0.96998 * 119.99840 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.78937 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.83431 * 180.27880 * 11 10 9 38 38 H 1.08001 * 120.05006 * 179.74594 * 12 11 10 39 39 H 0.96992 * 119.99969 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.16719 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 7 5.5246 2.8865 -0.3721 9 6 6.2135 4.0949 -0.5002 10 6 5.5104 5.2978 -0.5185 11 6 6.1839 6.5018 -0.6392 12 6 7.5558 6.5224 -0.7540 13 6 8.2789 5.3150 -0.7429 14 6 9.6881 5.3285 -0.8597 15 1 10.2067 4.4612 -1.2408 16 6 10.4107 6.4657 -0.4818 17 7 9.8573 7.3659 0.2896 18 14 12.1655 6.6984 -1.0785 19 1 12.1564 7.4370 -2.3668 20 1 12.9328 7.4722 -0.0698 21 1 12.8022 5.3710 -1.2734 22 6 7.5915 4.0953 -0.6138 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5490 2.1253 1.3968 29 1 1.9983 3.1543 1.3070 30 1 2.0699 1.5875 2.1492 31 1 4.0030 0.9835 0.7596 32 1 3.8571 0.8799 -1.0113 33 1 3.6265 3.3456 -1.1366 34 1 3.7724 3.4492 0.6344 35 1 6.0129 2.0484 -0.3640 36 1 4.4338 5.2914 -0.4330 37 1 5.6299 7.4289 -0.6479 38 1 8.0762 7.4637 -0.8520 39 1 10.3580 8.1543 0.5513 40 1 8.1371 3.1634 -0.6033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313438623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:02 Heat of formation + Delta-G solvation = -26.693647 kcal Electronic energy + Delta-G solvation = -17163.008870 eV Core-core repulsion = 14554.285911 eV Total energy + Delta-G solvation = -2608.722959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75087 -38.38272 -36.43887 -34.89239 -32.21313 -31.66368 -29.82237 -27.95144 -27.14811 -25.73701 -23.27865 -22.44385 -21.67658 -20.76978 -19.13814 -17.34492 -16.90733 -16.39174 -16.37073 -16.18317 -15.49613 -15.03471 -14.68382 -14.38398 -14.19470 -13.99099 -13.77072 -13.34521 -13.15428 -12.85315 -12.76136 -12.66854 -12.56334 -12.42190 -12.08144 -11.95501 -11.72320 -11.47314 -11.34973 -11.30412 -11.19414 -11.03123 -10.43289 -9.34666 -8.60987 -7.94205 -6.32897 1.04277 1.34109 1.39294 1.52599 1.59865 2.22949 2.79364 2.81060 3.82946 3.84866 3.95481 4.05140 4.32829 4.41965 4.48581 4.58630 4.61769 4.70833 4.73713 4.78369 4.90229 5.01756 5.12754 5.13230 5.16512 5.17845 5.21610 5.23513 5.26332 5.31133 5.41918 5.55616 5.57625 5.60643 5.94762 6.02477 6.19827 6.30659 6.62531 6.89132 7.01992 7.05811 7.25479 8.37569 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.058030 B = 0.003563 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.396629 B = 7857.371603 C = 8157.750021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.116 4.116 7 C 0.133 3.867 8 N -0.756 5.756 9 C 0.231 3.769 10 C -0.305 4.305 11 C -0.075 4.075 12 C -0.233 4.233 13 C 0.112 3.888 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.824 5.824 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.313 4.313 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.124 -10.237 0.104 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.153 4.153 7 C 0.009 3.991 8 N -0.388 5.388 9 C 0.129 3.871 10 C -0.328 4.328 11 C -0.094 4.094 12 C -0.254 4.254 13 C 0.109 3.891 14 C -0.532 4.532 15 H 0.090 0.910 16 C -0.180 4.180 17 N -0.450 5.450 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.338 4.338 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.302 -9.974 0.261 16.629 hybrid contribution 1.093 0.117 -0.080 1.102 sum -12.210 -9.858 0.181 15.693 Atomic orbital electron populations 1.21819 0.95231 1.01936 1.02054 1.21546 0.96442 0.95321 1.02133 1.21066 0.93461 0.97133 0.98728 0.91073 1.21953 1.01828 1.00191 0.96923 1.21755 0.96409 0.94576 1.02594 1.21302 0.79855 0.98078 0.99870 1.44564 1.05939 1.04785 1.83530 1.17581 0.90543 0.86535 0.92412 1.20159 0.97999 0.91241 1.23447 1.20735 0.94079 0.96836 0.97766 1.21117 0.93270 0.98029 1.12970 1.17714 0.93652 0.91400 0.86292 1.19808 0.92317 1.00857 1.40254 0.90963 1.26788 1.05037 0.94099 0.92057 1.69921 1.40494 1.09566 1.24980 0.85192 0.75969 0.79428 0.78986 1.18659 1.19120 1.18256 1.20526 0.92449 0.97100 1.23680 0.92753 0.92245 0.92295 0.91876 0.91884 0.91456 0.93345 0.92722 0.91369 0.91141 0.93680 0.93387 0.77065 0.87195 0.87364 0.88490 0.90238 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 71.98 0.70 -1.27 16 2 C -0.12 -1.72 5.40 30.59 0.17 -1.55 16 3 C -0.08 -1.48 2.39 -10.80 -0.03 -1.51 16 4 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.15 -2.66 8.70 71.98 0.63 -2.04 16 6 C -0.12 -2.43 4.80 30.59 0.15 -2.28 16 7 C 0.13 3.79 4.66 86.38 0.40 4.19 16 8 N -0.76 -27.08 5.73 -339.57 -1.95 -29.03 16 9 C 0.23 10.67 6.64 38.16 0.25 10.92 16 10 C -0.31 -14.12 9.32 22.59 0.21 -13.91 16 11 C -0.08 -3.73 10.01 22.20 0.22 -3.51 16 12 C -0.23 -13.09 8.70 22.75 0.20 -12.90 16 13 C 0.11 6.46 5.57 -21.31 -0.12 6.34 16 14 C -0.50 -28.57 9.05 23.46 0.21 -28.36 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.04 1.85 5.14 85.25 0.44 2.28 16 17 N -0.82 -45.00 10.96 21.82 0.24 -44.76 16 18 Si 0.98 39.62 29.60 68.60 2.03 41.65 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 C -0.31 -16.38 9.63 22.85 0.22 -16.16 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.01 6.57 -2.38 -0.02 0.99 16 29 H 0.05 0.96 6.57 -2.39 -0.02 0.95 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.32 7.93 -2.38 -0.02 1.31 16 34 H 0.05 1.43 6.38 -2.39 -0.02 1.41 16 35 H 0.40 12.83 8.48 -92.71 -0.79 12.04 16 36 H 0.11 4.46 6.70 -2.91 -0.02 4.44 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.10 5.66 6.15 -2.91 -0.02 5.65 16 39 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 40 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.35 320.08 4.19 -58.16 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.22 Total: 33.72 kcal Atomic # 6 Polarization: -63.38 SS G_CDS: 3.65 Total: -59.73 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.71 Total: -73.79 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -62.35 4.19 -58.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.462 kcal (2) G-P(sol) polarization free energy of solvation -62.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds