Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47082 * 2 1 4 4 H 1.09002 * 109.47826 * 55.00403 * 3 2 1 5 5 C 1.53001 * 109.47048 * 295.00001 * 3 2 1 6 6 C 1.53001 * 109.46906 * 175.00272 * 3 2 1 7 7 C 1.53007 * 109.47207 * 184.99662 * 6 3 2 8 8 N 1.46497 * 109.47387 * 179.97438 * 7 6 3 9 9 C 1.39678 * 120.00260 * 180.02562 * 8 7 6 10 10 C 1.39341 * 119.94984 * 359.72914 * 9 8 7 11 11 C 1.38478 * 120.42285 * 179.71935 * 10 9 8 12 12 C 1.37693 * 120.32368 * 0.55826 * 11 10 9 13 13 C 1.40745 * 119.89544 * 359.71534 * 12 11 10 14 14 C 1.41409 * 120.21139 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99905 * 204.44321 * 14 13 12 16 16 C 1.39926 * 119.99827 * 24.44629 * 14 13 12 17 17 N 1.30837 * 119.99846 * 17.88519 * 16 14 13 18 18 Si 1.86800 * 120.00040 * 197.88725 * 16 14 13 19 19 H 1.48498 * 109.46981 * 60.00040 * 18 16 14 20 20 H 1.48502 * 109.47109 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46999 * 299.99782 * 18 16 14 22 22 C 1.38271 * 119.95503 * 180.02562 * 9 8 7 23 23 H 1.09000 * 109.47576 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46745 * 300.00147 * 1 2 3 25 25 H 1.09001 * 109.47334 * 59.99606 * 1 2 3 26 26 H 1.08998 * 109.46988 * 239.99943 * 2 1 3 27 27 H 1.08997 * 109.47347 * 119.99877 * 2 1 3 28 28 H 1.08999 * 109.47237 * 60.00412 * 5 3 2 29 29 H 1.09009 * 109.47208 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47288 * 300.00066 * 5 3 2 31 31 H 1.08993 * 109.47313 * 304.99581 * 6 3 2 32 32 H 1.09004 * 109.47482 * 65.00313 * 6 3 2 33 33 H 1.08997 * 109.47346 * 300.00388 * 7 6 3 34 34 H 1.09004 * 109.46368 * 59.99968 * 7 6 3 35 35 H 0.97000 * 119.99619 * 0.02562 * 8 7 6 36 36 H 1.08005 * 119.78938 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.84015 * 180.27241 * 11 10 9 38 38 H 1.08001 * 120.05176 * 179.70487 * 12 11 10 39 39 H 0.96999 * 119.99997 * 180.02562 * 17 16 14 40 40 H 1.08008 * 120.16069 * 359.97336 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 4.0646 2.8849 0.2510 8 7 5.5245 2.8867 0.3719 9 6 6.2133 4.0950 0.4999 10 6 5.5113 5.2986 0.5067 11 6 6.1837 6.5019 0.6389 12 6 7.5557 6.5226 0.7536 13 6 8.2789 5.3152 0.7425 14 6 9.6880 5.3287 0.8604 15 1 10.2703 4.5065 0.4713 16 6 10.3279 6.4072 1.4812 17 7 9.6468 7.2171 2.2506 18 14 12.1544 6.6907 1.2112 19 1 12.4137 6.9040 -0.2353 20 1 12.5871 7.8896 1.9732 21 1 12.9141 5.5043 1.6807 22 6 7.5914 4.0955 0.6134 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5489 2.1252 -1.3969 29 1 1.9989 3.1541 -1.3076 30 1 2.0698 1.5875 -2.1492 31 1 3.8571 0.8800 1.0112 32 1 4.0029 0.9835 -0.7598 33 1 3.7723 3.4493 -0.6345 34 1 3.6264 3.3456 1.1364 35 1 6.0128 2.0486 0.3631 36 1 4.4354 5.2928 0.4125 37 1 5.6298 7.4290 0.6475 38 1 8.0761 7.4639 0.8516 39 1 10.0903 7.9649 2.6807 40 1 8.1370 3.1634 0.6039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313438626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -12.348817 kcal Electronic energy + Delta-G solvation = -17160.354937 eV Core-core repulsion = 14552.254016 eV Total energy + Delta-G solvation = -2608.100921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.13655 -37.19231 -34.85635 -33.12599 -31.08623 -29.69648 -28.57763 -26.66298 -25.18930 -24.66517 -22.03162 -20.68735 -19.92273 -19.88512 -17.25248 -15.58822 -15.47935 -15.21041 -14.98896 -14.48710 -14.29834 -13.79504 -13.52180 -12.98593 -12.68720 -12.57491 -12.12017 -12.03583 -12.01007 -11.67608 -11.52033 -11.32463 -11.06668 -10.93121 -10.72748 -10.61803 -10.51992 -10.48331 -10.29437 -9.70619 -9.27132 -9.14544 -8.65830 -7.33799 -6.66966 -6.14669 -4.26672 2.90866 3.11458 3.14610 3.27418 3.42532 3.99862 4.22640 4.69547 4.74631 4.76766 4.87843 5.13585 5.28858 5.37495 5.46760 5.53270 5.63844 5.73636 5.81844 5.87344 5.89514 5.91602 6.01897 6.13155 6.15798 6.35260 6.37856 6.40625 6.60398 7.08330 7.12181 7.16138 7.39422 7.45921 7.84583 7.96762 8.18990 8.30162 8.56240 8.70880 8.83914 9.04510 9.17353 10.29201 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.058200 B = 0.003553 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.982367 B = 7877.692487 C = 8159.132230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.126 4.126 7 C 0.136 3.864 8 N -0.765 5.765 9 C 0.224 3.776 10 C -0.302 4.302 11 C -0.075 4.075 12 C -0.200 4.200 13 C 0.141 3.859 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.291 4.291 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.387 0.613 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.279 0.721 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -9.075 -3.547 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.209 4.209 6 C -0.164 4.164 7 C 0.011 3.989 8 N -0.398 5.398 9 C 0.125 3.875 10 C -0.325 4.325 11 C -0.094 4.094 12 C -0.221 4.221 13 C 0.138 3.862 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.315 4.315 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.219 0.781 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.111 -8.787 -3.392 15.342 hybrid contribution 0.984 -0.130 0.034 0.993 sum -11.127 -8.916 -3.358 14.649 Atomic orbital electron populations 1.21826 0.96038 1.01315 1.01928 1.21571 0.95755 0.96452 1.01903 1.21092 0.94924 0.96065 0.98693 0.91040 1.21953 1.00962 1.01010 0.96963 1.21825 0.95189 0.97171 1.02165 1.21106 0.82190 0.95493 1.00155 1.44450 1.04432 1.05952 1.84986 1.17485 0.91016 0.84737 0.94224 1.19860 0.96801 0.91685 1.24130 1.20440 0.94792 0.95213 0.98985 1.21170 0.92428 0.98581 1.09893 1.17331 0.92859 0.90206 0.85760 1.19510 0.91965 1.04304 1.33770 0.90715 1.25889 1.00520 0.94819 0.92765 1.69861 1.38301 1.13064 1.20578 0.86415 0.82516 0.78430 0.79571 1.18893 1.20427 1.19120 1.20398 0.90971 0.97216 1.22866 0.93055 0.92799 0.92489 0.92087 0.92089 0.92704 0.92127 0.92786 0.91707 0.91682 0.93126 0.93538 0.78077 0.89757 0.89695 0.86792 0.91020 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.17 16 3 C -0.09 -0.88 2.39 -90.62 -0.22 -1.10 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.47 8.70 37.16 0.32 -1.15 16 6 C -0.13 -1.46 4.80 -26.73 -0.13 -1.59 16 7 C 0.14 2.07 4.66 -4.04 -0.02 2.05 16 8 N -0.76 -14.24 5.73 -58.68 -0.34 -14.58 16 9 C 0.22 5.23 6.64 -83.86 -0.56 4.68 16 10 C -0.30 -7.12 9.32 -39.08 -0.36 -7.49 16 11 C -0.08 -1.87 10.02 -39.69 -0.40 -2.26 16 12 C -0.20 -5.46 8.70 -38.83 -0.34 -5.80 16 13 C 0.14 3.94 5.57 -106.85 -0.60 3.35 16 14 C -0.47 -12.81 9.05 -37.74 -0.34 -13.16 16 15 H 0.07 1.98 7.91 -52.49 -0.42 1.56 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.93 16 17 N -0.79 -21.18 10.96 55.55 0.61 -20.57 16 18 Si 0.91 19.17 29.60 -169.99 -5.03 14.14 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.29 -7.46 9.63 -38.68 -0.37 -7.83 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 29 H 0.06 0.64 6.56 -51.92 -0.34 0.30 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.79 6.35 -51.93 -0.33 0.46 16 34 H 0.05 0.75 7.95 -51.93 -0.41 0.33 16 35 H 0.39 6.55 8.48 -40.82 -0.35 6.20 16 36 H 0.08 1.80 6.70 -52.48 -0.35 1.45 16 37 H 0.08 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.11 3.19 6.15 -52.49 -0.32 2.87 16 39 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -28.63 320.08 -9.38 -38.01 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.56 Total: 8.54 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -2.88 Total: -30.37 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.27 Total: -35.15 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.63 -9.38 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.665 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds