Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47082 * 2 1 4 4 H 1.09002 * 109.47826 * 55.00403 * 3 2 1 5 5 C 1.53001 * 109.47048 * 295.00001 * 3 2 1 6 6 C 1.53001 * 109.46906 * 175.00272 * 3 2 1 7 7 C 1.53007 * 109.47207 * 184.99662 * 6 3 2 8 8 N 1.46497 * 109.47387 * 179.97438 * 7 6 3 9 9 C 1.39678 * 120.00260 * 180.02562 * 8 7 6 10 10 C 1.39341 * 119.94984 * 359.72914 * 9 8 7 11 11 C 1.38478 * 120.42285 * 179.71935 * 10 9 8 12 12 C 1.37693 * 120.32368 * 0.55826 * 11 10 9 13 13 C 1.40745 * 119.89544 * 359.71534 * 12 11 10 14 14 C 1.41409 * 120.21139 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99905 * 204.44321 * 14 13 12 16 16 C 1.39926 * 119.99827 * 24.44629 * 14 13 12 17 17 N 1.30837 * 119.99846 * 17.88519 * 16 14 13 18 18 Si 1.86800 * 120.00040 * 197.88725 * 16 14 13 19 19 H 1.48498 * 109.46981 * 60.00040 * 18 16 14 20 20 H 1.48502 * 109.47109 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46999 * 299.99782 * 18 16 14 22 22 C 1.38271 * 119.95503 * 180.02562 * 9 8 7 23 23 H 1.09000 * 109.47576 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46745 * 300.00147 * 1 2 3 25 25 H 1.09001 * 109.47334 * 59.99606 * 1 2 3 26 26 H 1.08998 * 109.46988 * 239.99943 * 2 1 3 27 27 H 1.08997 * 109.47347 * 119.99877 * 2 1 3 28 28 H 1.08999 * 109.47237 * 60.00412 * 5 3 2 29 29 H 1.09009 * 109.47208 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47288 * 300.00066 * 5 3 2 31 31 H 1.08993 * 109.47313 * 304.99581 * 6 3 2 32 32 H 1.09004 * 109.47482 * 65.00313 * 6 3 2 33 33 H 1.08997 * 109.47346 * 300.00388 * 7 6 3 34 34 H 1.09004 * 109.46368 * 59.99968 * 7 6 3 35 35 H 0.97000 * 119.99619 * 0.02562 * 8 7 6 36 36 H 1.08005 * 119.78938 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.84015 * 180.27241 * 11 10 9 38 38 H 1.08001 * 120.05176 * 179.70487 * 12 11 10 39 39 H 0.96999 * 119.99997 * 180.02562 * 17 16 14 40 40 H 1.08008 * 120.16069 * 359.97336 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 4.0646 2.8849 0.2510 8 7 5.5245 2.8867 0.3719 9 6 6.2133 4.0950 0.4999 10 6 5.5113 5.2986 0.5067 11 6 6.1837 6.5019 0.6389 12 6 7.5557 6.5226 0.7536 13 6 8.2789 5.3152 0.7425 14 6 9.6880 5.3287 0.8604 15 1 10.2703 4.5065 0.4713 16 6 10.3279 6.4072 1.4812 17 7 9.6468 7.2171 2.2506 18 14 12.1544 6.6907 1.2112 19 1 12.4137 6.9040 -0.2353 20 1 12.5871 7.8896 1.9732 21 1 12.9141 5.5043 1.6807 22 6 7.5914 4.0955 0.6134 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5489 2.1252 -1.3969 29 1 1.9989 3.1541 -1.3076 30 1 2.0698 1.5875 -2.1492 31 1 3.8571 0.8800 1.0112 32 1 4.0029 0.9835 -0.7598 33 1 3.7723 3.4493 -0.6345 34 1 3.6264 3.3456 1.1364 35 1 6.0128 2.0486 0.3631 36 1 4.4354 5.2928 0.4125 37 1 5.6298 7.4290 0.6475 38 1 8.0761 7.4639 0.8516 39 1 10.0903 7.9649 2.6807 40 1 8.1370 3.1634 0.6039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313438626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -26.646039 kcal Electronic energy + Delta-G solvation = -17160.974911 eV Core-core repulsion = 14552.254016 eV Total energy + Delta-G solvation = -2608.720895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74997 -38.38210 -36.43878 -34.89185 -32.21320 -31.66230 -29.82098 -27.94879 -27.14685 -25.73678 -23.27862 -22.44355 -21.67609 -20.76988 -19.13680 -17.33949 -16.90867 -16.40427 -16.36227 -16.18223 -15.49621 -15.03363 -14.67911 -14.40646 -14.19310 -13.94772 -13.75225 -13.46460 -13.02292 -12.83312 -12.78174 -12.73647 -12.49857 -12.44205 -12.11300 -11.93401 -11.75723 -11.46478 -11.35663 -11.27846 -11.20081 -11.02974 -10.43246 -9.34533 -8.60880 -7.94176 -6.32769 1.05174 1.34301 1.39273 1.50923 1.60899 2.22941 2.79468 2.81217 3.82970 3.84859 3.95630 4.05216 4.32624 4.41961 4.48607 4.58574 4.61888 4.70899 4.73776 4.78408 4.90337 5.01782 5.12751 5.13245 5.16390 5.17919 5.21661 5.23531 5.26304 5.31151 5.41913 5.55577 5.57794 5.60694 5.94793 6.02407 6.19798 6.30726 6.62483 6.89117 7.01943 7.05859 7.25546 8.37505 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.058200 B = 0.003553 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.982367 B = 7877.692487 C = 8159.132230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.069 0.931 5 C -0.151 4.151 6 C -0.115 4.115 7 C 0.133 3.867 8 N -0.756 5.756 9 C 0.231 3.769 10 C -0.306 4.306 11 C -0.075 4.075 12 C -0.233 4.233 13 C 0.113 3.887 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.824 5.824 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.314 4.314 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 -10.016 -3.882 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.208 4.208 6 C -0.153 4.153 7 C 0.009 3.991 8 N -0.388 5.388 9 C 0.129 3.871 10 C -0.329 4.329 11 C -0.094 4.094 12 C -0.254 4.254 13 C 0.110 3.890 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.450 5.450 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.338 4.338 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.986 -9.766 -3.730 16.671 hybrid contribution 1.088 0.101 0.138 1.102 sum -11.898 -9.665 -3.593 15.744 Atomic orbital electron populations 1.21821 0.95235 1.01935 1.02051 1.21543 0.96440 0.95327 1.02131 1.21070 0.93459 0.97133 0.98769 0.91214 1.21949 1.01821 1.00213 0.96859 1.21757 0.96416 0.94567 1.02590 1.21301 0.79852 0.98089 0.99857 1.44561 1.05940 1.04801 1.83512 1.17579 0.90566 0.86526 0.92393 1.20157 0.98081 0.91290 1.23347 1.20734 0.94113 0.96888 0.97675 1.21118 0.93602 0.97846 1.12843 1.17710 0.93653 0.91240 0.86430 1.19786 0.92437 1.05646 1.35454 0.90913 1.26789 1.05571 0.93889 0.91715 1.69920 1.40524 1.13540 1.20969 0.85250 0.76000 0.78813 0.79572 1.18526 1.19057 1.18337 1.20527 0.92259 0.96754 1.24248 0.92243 0.92833 0.92224 0.91787 0.91977 0.91478 0.93290 0.92613 0.91316 0.91193 0.93117 0.93967 0.77064 0.87206 0.87366 0.88488 0.90224 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.28 16 2 C -0.12 -1.72 5.40 30.59 0.17 -1.56 16 3 C -0.09 -1.49 2.39 -10.79 -0.03 -1.52 16 4 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.15 -2.60 8.70 71.98 0.63 -1.98 16 6 C -0.12 -2.43 4.80 30.60 0.15 -2.28 16 7 C 0.13 3.80 4.66 86.38 0.40 4.20 16 8 N -0.76 -27.10 5.73 -339.58 -1.95 -29.05 16 9 C 0.23 10.68 6.64 38.16 0.25 10.93 16 10 C -0.31 -14.14 9.32 22.59 0.21 -13.93 16 11 C -0.08 -3.73 10.02 22.20 0.22 -3.51 16 12 C -0.23 -13.11 8.70 22.75 0.20 -12.91 16 13 C 0.11 6.48 5.57 -21.31 -0.12 6.36 16 14 C -0.50 -28.62 9.05 23.46 0.21 -28.40 16 15 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 16 C 0.04 1.86 5.14 85.25 0.44 2.30 16 17 N -0.82 -45.02 10.96 21.82 0.24 -44.78 16 18 Si 0.98 39.57 29.60 68.60 2.03 41.60 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 C -0.31 -16.40 9.63 22.86 0.22 -16.18 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.06 0.73 6.56 -2.39 -0.02 0.72 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 29 H 0.05 0.95 6.56 -2.38 -0.02 0.94 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.48 6.35 -2.39 -0.02 1.47 16 34 H 0.04 1.27 7.95 -2.39 -0.02 1.25 16 35 H 0.40 12.83 8.48 -92.71 -0.79 12.05 16 36 H 0.11 4.46 6.70 -2.91 -0.02 4.44 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.10 5.66 6.15 -2.91 -0.02 5.65 16 39 H 0.29 14.14 8.30 -92.71 -0.77 13.38 16 40 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.34 320.08 4.19 -58.15 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.22 Total: 33.84 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 3.65 Total: -59.77 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.71 Total: -73.82 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -62.34 4.19 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.503 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds