Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 C 1.53003 * 109.46967 * 60.00220 * 3 2 1 5 5 C 1.52995 * 109.47352 * 300.00481 * 3 2 1 6 6 C 1.52998 * 109.47413 * 179.97438 * 3 2 1 7 7 N 1.46494 * 109.47223 * 180.02562 * 6 3 2 8 8 C 1.39688 * 120.00203 * 180.02562 * 7 6 3 9 9 C 1.39337 * 119.94697 * 359.97369 * 8 7 6 10 10 C 1.38486 * 120.42167 * 180.02562 * 9 8 7 11 11 C 1.37681 * 120.32339 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89949 * 0.04507 * 11 10 9 13 13 C 1.41405 * 120.21104 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99991 * 24.35696 * 13 12 11 15 15 C 1.39935 * 119.99607 * 204.36141 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.83180 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.83202 * 15 13 12 18 18 H 1.48501 * 109.47197 * 60.00065 * 17 15 13 19 19 H 1.48497 * 109.47271 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47562 * 299.99846 * 17 15 13 21 21 C 1.38282 * 119.95529 * 180.02562 * 8 7 6 22 22 H 1.08992 * 109.47326 * 59.99736 * 1 2 3 23 23 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47311 * 299.99497 * 1 2 3 25 25 H 1.09003 * 109.47128 * 239.99995 * 2 1 3 26 26 H 1.09005 * 109.47024 * 120.00331 * 2 1 3 27 27 H 1.09001 * 109.47437 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.46855 * 300.00117 * 4 3 2 29 29 H 1.09001 * 109.47521 * 59.99512 * 4 3 2 30 30 H 1.08998 * 109.46910 * 299.99996 * 5 3 2 31 31 H 1.08998 * 109.47230 * 59.99241 * 5 3 2 32 32 H 1.09002 * 109.47255 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.46693 * 60.00100 * 6 3 2 34 34 H 1.09005 * 109.47024 * 300.00331 * 6 3 2 35 35 H 0.96998 * 119.99993 * 359.97438 * 7 6 3 36 36 H 1.07995 * 119.78946 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.83404 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.05321 * 179.97438 * 11 10 9 39 39 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.15732 * 359.69223 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1638 -1.2491 6 6 3.5700 1.4424 0.0006 7 7 4.0584 2.8236 0.0013 8 6 5.4317 3.0789 0.0014 9 6 6.3362 2.0190 0.0015 10 6 7.6998 2.2608 0.0021 11 6 8.1767 3.5523 0.0021 12 6 7.2752 4.6332 0.0025 13 6 7.7578 5.9623 0.0031 14 1 8.7430 6.1792 -0.3825 15 6 6.9588 6.9965 0.5033 16 7 5.9392 6.7206 1.2753 17 14 7.3481 8.7710 0.0688 18 1 7.2808 8.9462 -1.4043 19 1 6.3594 9.6682 0.7190 20 1 8.7130 9.1095 0.5457 21 6 5.8916 4.3830 0.0025 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8931 3.1915 1.2492 28 1 0.4400 2.1637 1.2493 29 1 1.8933 1.6498 2.1393 30 1 1.8933 1.6499 -2.1391 31 1 0.4400 2.1637 -1.2491 32 1 1.8930 3.1915 -1.2489 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9286 0.8909 35 1 3.4280 3.5608 0.0008 36 1 5.9716 1.0024 0.0010 37 1 8.3924 1.4321 0.0017 38 1 9.2410 3.7359 0.0031 39 1 5.3856 7.4375 1.6223 40 1 5.1914 5.2052 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313443091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = -4.542618 kcal Electronic energy + Delta-G solvation = -17888.742425 eV Core-core repulsion = 15280.980007 eV Total energy + Delta-G solvation = -2607.762419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.70880 -37.23846 -34.25038 -33.03366 -30.28151 -29.36996 -27.85794 -27.20735 -25.78165 -25.06687 -22.86819 -20.94632 -19.79036 -18.42906 -17.15759 -16.09635 -14.98344 -14.89839 -14.78516 -14.38610 -14.07575 -14.02673 -13.31156 -12.72473 -12.62155 -12.38635 -12.21808 -12.12790 -11.83779 -11.72756 -11.49243 -11.15183 -11.03977 -10.97045 -10.61224 -10.51690 -10.47557 -10.35607 -10.24304 -9.55946 -9.38657 -9.17141 -8.67505 -7.25294 -6.67911 -6.07576 -4.26096 2.92790 3.11436 3.15104 3.29155 3.40072 4.01256 4.36862 4.77413 4.83286 4.85717 4.92057 5.25895 5.39325 5.46095 5.64329 5.76203 5.85900 5.86694 5.92382 5.93626 5.99756 6.11881 6.14919 6.18047 6.26420 6.33806 6.49088 6.50322 6.65669 6.94404 7.17723 7.19610 7.44017 7.51347 7.88442 8.02732 8.17469 8.23069 8.55198 8.79768 8.90438 9.06864 9.18644 10.30630 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.005324 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.714748 B = 5258.290748 C = 6007.675356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.141 4.141 6 C 0.148 3.852 7 N -0.757 5.757 8 C 0.217 3.783 9 C -0.299 4.299 10 C -0.066 4.066 11 C -0.259 4.259 12 C 0.139 3.861 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.079 3.921 16 N -0.793 5.793 17 Si 0.904 3.096 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.233 4.233 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.388 0.612 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.277 0.723 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 -7.408 -1.704 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.199 4.199 5 C -0.198 4.198 6 C 0.022 3.978 7 N -0.392 5.392 8 C 0.118 3.882 9 C -0.322 4.322 10 C -0.085 4.085 11 C -0.279 4.279 12 C 0.136 3.864 13 C -0.496 4.496 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.419 5.419 17 Si 0.728 3.272 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.256 4.256 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.223 0.777 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.383 -7.496 -1.554 12.900 hybrid contribution -0.041 1.062 -0.047 1.064 sum -10.423 -6.434 -1.601 12.353 Atomic orbital electron populations 1.21870 0.95974 1.01192 1.02067 1.21498 0.95824 0.95558 1.02016 1.20776 0.95122 0.95580 0.96103 1.21897 1.00320 1.00809 0.96829 1.21890 1.00379 1.00692 0.96850 1.21052 0.91328 0.85415 0.99960 1.44470 1.04115 1.05123 1.85487 1.17660 0.82067 0.93972 0.94525 1.19886 0.92868 0.95374 1.24093 1.20279 0.93997 0.95535 0.98719 1.20847 0.97506 0.92483 1.17091 1.17307 0.90854 0.92305 0.85927 1.19520 1.01879 0.91524 1.36723 0.90680 1.25859 0.94066 1.01305 0.92626 1.69866 1.14563 1.34788 1.22682 0.86454 0.79113 0.81706 0.79888 1.18950 1.20506 1.19110 1.20708 0.96261 0.92713 1.15963 0.92488 0.93147 0.92453 0.91954 0.91925 0.92251 0.92723 0.92688 0.92723 0.92685 0.92365 0.93584 0.93558 0.77707 0.89742 0.89736 0.89479 0.91213 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.21 37.16 0.34 -1.04 16 2 C -0.11 -1.17 4.99 -26.73 -0.13 -1.30 16 3 C -0.08 -0.93 0.56 -154.51 -0.09 -1.02 16 4 C -0.14 -1.75 7.95 37.16 0.30 -1.45 16 5 C -0.14 -1.69 7.95 37.15 0.30 -1.40 16 6 C 0.15 2.34 3.80 -4.05 -0.02 2.33 16 7 N -0.76 -14.62 5.13 -58.69 -0.30 -14.92 16 8 C 0.22 5.16 6.64 -83.85 -0.56 4.61 16 9 C -0.30 -7.00 9.32 -39.08 -0.36 -7.37 16 10 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 11 C -0.26 -6.69 9.79 -38.84 -0.38 -7.07 16 12 C 0.14 3.86 5.57 -106.85 -0.60 3.27 16 13 C -0.47 -12.82 9.05 -37.74 -0.34 -13.16 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 2.03 5.14 -17.34 -0.09 1.94 16 16 N -0.79 -20.99 10.95 55.55 0.61 -20.38 16 17 Si 0.90 19.15 29.59 -169.99 -5.03 14.11 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.23 -6.19 8.53 -38.67 -0.33 -6.52 16 22 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.82 6.86 -51.93 -0.36 0.46 16 28 H 0.05 0.58 6.43 -51.92 -0.33 0.25 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 32 H 0.06 0.77 6.86 -51.93 -0.36 0.41 16 33 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 35 H 0.39 7.21 6.17 -40.82 -0.25 6.95 16 36 H 0.08 1.79 6.70 -52.49 -0.35 1.44 16 37 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -28.13 312.89 -8.67 -36.80 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.31 Total: 9.84 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -2.36 Total: -30.17 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.31 Total: -35.30 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.13 -8.67 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds