Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 C 1.53003 * 109.46967 * 60.00220 * 3 2 1 5 5 C 1.52995 * 109.47352 * 300.00481 * 3 2 1 6 6 C 1.52998 * 109.47413 * 179.97438 * 3 2 1 7 7 N 1.46494 * 109.47223 * 180.02562 * 6 3 2 8 8 C 1.39688 * 120.00203 * 180.02562 * 7 6 3 9 9 C 1.39337 * 119.94697 * 359.97369 * 8 7 6 10 10 C 1.38486 * 120.42167 * 180.02562 * 9 8 7 11 11 C 1.37681 * 120.32339 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89949 * 0.04507 * 11 10 9 13 13 C 1.41405 * 120.21104 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99991 * 24.35696 * 13 12 11 15 15 C 1.39935 * 119.99607 * 204.36141 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.83180 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.83202 * 15 13 12 18 18 H 1.48501 * 109.47197 * 60.00065 * 17 15 13 19 19 H 1.48497 * 109.47271 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47562 * 299.99846 * 17 15 13 21 21 C 1.38282 * 119.95529 * 180.02562 * 8 7 6 22 22 H 1.08992 * 109.47326 * 59.99736 * 1 2 3 23 23 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47311 * 299.99497 * 1 2 3 25 25 H 1.09003 * 109.47128 * 239.99995 * 2 1 3 26 26 H 1.09005 * 109.47024 * 120.00331 * 2 1 3 27 27 H 1.09001 * 109.47437 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.46855 * 300.00117 * 4 3 2 29 29 H 1.09001 * 109.47521 * 59.99512 * 4 3 2 30 30 H 1.08998 * 109.46910 * 299.99996 * 5 3 2 31 31 H 1.08998 * 109.47230 * 59.99241 * 5 3 2 32 32 H 1.09002 * 109.47255 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.46693 * 60.00100 * 6 3 2 34 34 H 1.09005 * 109.47024 * 300.00331 * 6 3 2 35 35 H 0.96998 * 119.99993 * 359.97438 * 7 6 3 36 36 H 1.07995 * 119.78946 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.83404 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.05321 * 179.97438 * 11 10 9 39 39 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.15732 * 359.69223 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1638 -1.2491 6 6 3.5700 1.4424 0.0006 7 7 4.0584 2.8236 0.0013 8 6 5.4317 3.0789 0.0014 9 6 6.3362 2.0190 0.0015 10 6 7.6998 2.2608 0.0021 11 6 8.1767 3.5523 0.0021 12 6 7.2752 4.6332 0.0025 13 6 7.7578 5.9623 0.0031 14 1 8.7430 6.1792 -0.3825 15 6 6.9588 6.9965 0.5033 16 7 5.9392 6.7206 1.2753 17 14 7.3481 8.7710 0.0688 18 1 7.2808 8.9462 -1.4043 19 1 6.3594 9.6682 0.7190 20 1 8.7130 9.1095 0.5457 21 6 5.8916 4.3830 0.0025 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8931 3.1915 1.2492 28 1 0.4400 2.1637 1.2493 29 1 1.8933 1.6498 2.1393 30 1 1.8933 1.6499 -2.1391 31 1 0.4400 2.1637 -1.2491 32 1 1.8930 3.1915 -1.2489 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9286 0.8909 35 1 3.4280 3.5608 0.0008 36 1 5.9716 1.0024 0.0010 37 1 8.3924 1.4321 0.0017 38 1 9.2410 3.7359 0.0031 39 1 5.3856 7.4375 1.6223 40 1 5.1914 5.2052 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313443091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = -18.468519 kcal Electronic energy + Delta-G solvation = -17889.346298 eV Core-core repulsion = 15280.980007 eV Total energy + Delta-G solvation = -2608.366291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07952 -38.84591 -35.96707 -34.79378 -31.43845 -31.28476 -29.37134 -28.19850 -27.25409 -26.86706 -23.98137 -22.83464 -21.60720 -19.50500 -19.05606 -17.73338 -16.68868 -16.50166 -15.99393 -15.91287 -15.44609 -15.06089 -14.67201 -14.45838 -14.22878 -13.98433 -13.69342 -13.26581 -12.98745 -12.85104 -12.79411 -12.73892 -12.66146 -12.43606 -12.11858 -12.00877 -11.63224 -11.42978 -11.39027 -11.33025 -11.21963 -11.04841 -10.46141 -9.24911 -8.61351 -7.87622 -6.31698 1.10034 1.34449 1.38362 1.49677 1.60182 2.23286 2.80925 2.88827 3.76982 3.84575 3.91191 3.92494 4.42272 4.43003 4.51662 4.63179 4.73250 4.75493 4.78216 4.80269 4.88287 4.99464 5.05410 5.09418 5.13739 5.17597 5.20190 5.24117 5.30674 5.32071 5.46235 5.52430 5.59130 5.63184 5.97456 6.11868 6.22121 6.27730 6.59051 6.95338 7.06406 7.08683 7.26874 8.38869 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.005324 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.714748 B = 5258.290748 C = 6007.675356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.145 3.855 7 N -0.749 5.749 8 C 0.220 3.780 9 C -0.304 4.304 10 C -0.062 4.062 11 C -0.287 4.287 12 C 0.109 3.891 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.038 3.962 16 N -0.822 5.822 17 Si 0.979 3.021 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.261 4.261 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.391 0.609 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.285 0.715 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -8.210 -1.930 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.068 4.068 4 C -0.197 4.197 5 C -0.196 4.196 6 C 0.020 3.980 7 N -0.382 5.382 8 C 0.118 3.882 9 C -0.327 4.327 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.106 3.894 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.448 5.448 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.285 4.285 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.727 -8.330 -1.777 14.494 hybrid contribution 0.313 1.180 0.041 1.221 sum -11.414 -7.151 -1.736 13.581 Atomic orbital electron populations 1.21851 0.94498 1.02160 1.02321 1.21481 0.97041 0.93738 1.02330 1.20729 0.92465 0.97267 0.96316 1.21886 1.01685 0.99458 0.96654 1.21880 1.01704 0.99478 0.96571 1.21268 0.93924 0.83100 0.99675 1.44577 1.02532 1.06978 1.84130 1.17797 0.84207 0.93234 0.92935 1.20217 0.92784 0.96387 1.23312 1.20645 0.94922 0.95664 0.96877 1.21013 0.97581 0.93261 1.18885 1.17708 0.91845 0.93237 0.86596 1.19794 1.02580 0.92658 1.38573 0.91012 1.26711 0.93573 1.05607 0.91775 1.69925 1.15328 1.36530 1.23048 0.85307 0.79289 0.75805 0.79580 1.18638 1.19110 1.18428 1.20642 0.95827 0.93553 1.18521 0.92124 0.91918 0.92267 0.91562 0.91778 0.94232 0.90589 0.93012 0.92694 0.90618 0.94118 0.93494 0.93924 0.77435 0.87182 0.86427 0.89215 0.90459 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.21 71.98 0.66 -1.58 16 2 C -0.11 -1.98 4.99 30.59 0.15 -1.82 16 3 C -0.07 -1.55 0.56 -52.18 -0.03 -1.58 16 4 C -0.14 -3.25 7.95 71.98 0.57 -2.67 16 5 C -0.14 -3.10 7.95 71.98 0.57 -2.53 16 6 C 0.14 4.39 3.80 86.38 0.33 4.72 16 7 N -0.75 -28.84 5.13 -339.58 -1.74 -30.58 16 8 C 0.22 10.55 6.64 38.16 0.25 10.80 16 9 C -0.30 -13.94 9.32 22.59 0.21 -13.72 16 10 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 11 C -0.29 -15.14 9.79 22.75 0.22 -14.92 16 12 C 0.11 6.27 5.57 -21.31 -0.12 6.15 16 13 C -0.51 -28.86 9.05 23.46 0.21 -28.65 16 14 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 15 C 0.04 2.01 5.14 85.25 0.44 2.44 16 16 N -0.82 -44.61 10.95 21.82 0.24 -44.37 16 17 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 21 C -0.26 -14.39 8.53 22.86 0.19 -14.19 16 22 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.07 6.86 -2.39 -0.02 1.05 16 28 H 0.08 1.44 6.43 -2.38 -0.02 1.42 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.38 6.43 -2.39 -0.02 1.36 16 32 H 0.04 1.04 6.86 -2.39 -0.02 1.03 16 33 H 0.05 1.44 7.94 -2.39 -0.02 1.42 16 34 H 0.04 1.35 7.94 -2.38 -0.02 1.33 16 35 H 0.39 14.70 6.17 -92.71 -0.57 14.12 16 36 H 0.11 4.42 6.70 -2.91 -0.02 4.40 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 40 H 0.10 5.65 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -61.77 312.89 4.86 -56.90 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.44 Total: 36.59 kcal Atomic # 6 Polarization: -64.14 SS G_CDS: 3.89 Total: -60.25 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.50 Total: -74.95 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -61.77 4.86 -56.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.433 kcal (2) G-P(sol) polarization free energy of solvation -61.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds