Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 C 1.53004 * 109.47073 * 120.00243 * 2 1 3 5 5 C 1.53002 * 109.46730 * 174.55388 * 4 2 1 6 6 H 1.08993 * 109.47535 * 57.28016 * 5 4 2 7 7 C 1.53008 * 109.46955 * 177.28382 * 5 4 2 8 8 N 1.46501 * 109.47318 * 297.27718 * 5 4 2 9 9 C 1.39683 * 120.00239 * 154.99872 * 8 5 4 10 10 C 1.39337 * 119.94907 * 0.02562 * 9 8 5 11 11 C 1.38482 * 120.42512 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.32385 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89229 * 0.02562 * 12 11 10 14 14 C 1.41409 * 120.20812 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99912 * 28.09014 * 14 13 12 16 16 C 1.39924 * 120.00278 * 208.08588 * 14 13 12 17 17 N 1.30833 * 119.99968 * 12.59343 * 16 14 13 18 18 Si 1.86804 * 120.00003 * 192.59489 * 16 14 13 19 19 H 1.48496 * 109.47088 * 84.99221 * 18 16 14 20 20 H 1.48503 * 109.47028 * 204.98937 * 18 16 14 21 21 H 1.48501 * 109.47210 * 324.98749 * 18 16 14 22 22 C 1.38277 * 119.95374 * 179.72672 * 9 8 5 23 23 H 1.08999 * 109.46906 * 304.61706 * 1 2 3 24 24 H 1.08995 * 109.47221 * 64.61816 * 1 2 3 25 25 H 1.09007 * 109.46829 * 184.62169 * 1 2 3 26 26 H 1.09004 * 109.46979 * 240.00098 * 2 1 3 27 27 H 1.09001 * 109.47359 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47264 * 300.00400 * 3 2 1 29 29 H 1.09004 * 109.47009 * 60.00117 * 3 2 1 30 30 H 1.09000 * 109.47313 * 54.55606 * 4 2 1 31 31 H 1.08995 * 109.47362 * 294.55168 * 4 2 1 32 32 H 1.09007 * 109.46374 * 299.99911 * 7 5 4 33 33 H 1.08993 * 109.47298 * 59.99489 * 7 5 4 34 34 H 1.09000 * 109.47120 * 180.02562 * 7 5 4 35 35 H 0.97007 * 119.99815 * 335.00462 * 8 5 4 36 36 H 1.07995 * 119.79022 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.83759 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.05554 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99865 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.15861 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5639 -0.8409 1.1826 6 1 4.0024 0.1520 1.0839 7 6 4.0801 -1.5015 2.4626 8 7 3.9396 -1.6578 0.0259 9 6 5.1977 -1.5017 -0.5604 10 6 6.0949 -0.5690 -0.0440 11 6 7.3450 -0.4065 -0.6173 12 6 7.7153 -1.1659 -1.7045 13 6 6.8196 -2.1120 -2.2371 14 6 7.1927 -2.8951 -3.3538 15 1 8.2334 -3.1254 -3.5283 16 6 6.2138 -3.3718 -4.2326 17 7 4.9950 -2.9001 -4.1723 18 14 6.6472 -4.6816 -5.4920 19 1 6.5377 -6.0243 -4.8674 20 1 5.7108 -4.5925 -6.6412 21 1 8.0374 -4.4692 -5.9688 22 6 5.5533 -2.2772 -1.6486 23 1 -0.3633 0.5838 0.8457 24 1 -0.3633 0.4405 -0.9284 25 1 -0.3633 -1.0244 0.0828 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.5993 -1.7170 1.2993 31 1 1.7586 -0.1543 2.1366 32 1 3.8006 -0.8936 3.3232 33 1 3.6416 -2.4944 2.5613 34 1 5.1658 -1.5863 2.4153 35 1 3.3145 -2.3071 -0.3328 36 1 5.8140 0.0304 0.8093 37 1 8.0328 0.3196 -0.2096 38 1 8.6911 -1.0352 -2.1484 39 1 4.3162 -3.2308 -4.7813 40 1 4.8607 -3.0041 -2.0464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313473844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = -7.630316 kcal Electronic energy + Delta-G solvation = -18059.524467 eV Core-core repulsion = 15451.628156 eV Total energy + Delta-G solvation = -2607.896311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.41054 -36.82049 -34.38277 -33.18400 -30.84087 -29.37280 -27.07768 -26.99018 -26.29966 -25.08732 -21.61784 -20.73705 -20.05896 -19.21510 -17.18317 -15.98239 -15.15467 -14.94520 -14.58423 -14.26393 -14.23409 -13.34025 -13.05143 -12.71184 -12.46829 -12.32540 -12.14468 -12.12965 -11.73358 -11.62368 -11.44778 -11.23079 -11.06601 -10.99626 -10.64185 -10.47652 -10.35171 -10.29873 -10.07771 -9.55510 -9.37059 -9.18381 -8.70369 -7.20933 -6.63178 -6.06948 -4.26862 2.92504 3.13315 3.16819 3.28363 3.39062 4.03235 4.38584 4.80808 4.88308 5.06449 5.08034 5.52703 5.54555 5.65732 5.72058 5.80829 5.88264 5.89999 5.95830 6.03985 6.05255 6.10087 6.25632 6.32789 6.36339 6.54340 6.56158 6.59435 6.71029 6.94666 7.18339 7.21046 7.45214 7.51979 7.88783 8.02109 8.17197 8.24762 8.56998 8.80130 8.91836 9.07746 9.18522 10.35704 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.006161 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.988928 B = 4543.323272 C = 5234.145355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.119 4.119 5 C 0.154 3.846 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.752 5.752 9 C 0.218 3.782 10 C -0.296 4.296 11 C -0.069 4.069 12 C -0.256 4.256 13 C 0.139 3.861 14 C -0.467 4.467 15 H 0.074 0.926 16 C 0.076 3.924 17 N -0.800 5.800 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.226 4.226 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.275 0.725 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 3.162 7.621 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.093 0.907 7 C -0.226 4.226 8 N -0.385 5.385 9 C 0.119 3.881 10 C -0.319 4.319 11 C -0.088 4.088 12 C -0.277 4.277 13 C 0.136 3.864 14 C -0.497 4.497 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.427 5.427 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.250 4.250 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.221 0.779 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.699 3.291 7.639 11.334 hybrid contribution -0.114 -0.788 -0.767 1.106 sum -7.814 2.504 6.871 10.702 Atomic orbital electron populations 1.21845 0.95898 1.01274 1.01253 1.21097 0.94755 0.96632 0.99144 1.21846 1.01823 0.95789 1.00844 1.21913 0.95424 1.00418 0.97934 1.20709 0.93230 0.95287 0.86052 0.90660 1.22309 1.02309 1.00519 0.97452 1.44506 1.15523 1.44644 1.33789 1.17647 0.84115 0.94244 0.92060 1.19925 0.96657 1.08321 1.06949 1.20291 0.94938 0.97726 0.95853 1.20891 1.00950 1.03326 1.02488 1.17329 0.90545 0.88495 0.90048 1.19528 0.94304 1.28563 1.07346 0.90780 1.25835 0.94535 0.95677 0.97957 1.69846 1.02952 1.35938 1.33915 0.86379 0.79380 0.81437 0.79732 1.19453 1.20531 1.18840 1.20743 1.00385 1.05478 0.98364 0.93183 0.92963 0.92997 0.90220 0.92005 0.93115 0.93380 0.92043 0.91528 0.93133 0.93099 0.92014 0.77931 0.89561 0.89774 0.89499 0.91375 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.10 -1.28 2.85 -90.62 -0.26 -1.54 16 3 C -0.15 -1.89 8.96 37.16 0.33 -1.56 16 4 C -0.12 -1.49 4.23 -26.73 -0.11 -1.60 16 5 C 0.15 2.34 2.11 -67.92 -0.14 2.20 16 6 H 0.08 1.23 4.79 -51.93 -0.25 0.98 16 7 C -0.17 -2.38 9.42 37.16 0.35 -2.03 16 8 N -0.75 -14.03 4.53 -52.21 -0.24 -14.27 16 9 C 0.22 5.04 6.63 -83.86 -0.56 4.48 16 10 C -0.30 -6.70 8.85 -39.08 -0.35 -7.04 16 11 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 12 C -0.26 -6.55 9.79 -38.83 -0.38 -6.93 16 13 C 0.14 3.81 5.55 -106.85 -0.59 3.22 16 14 C -0.47 -12.79 9.06 -37.74 -0.34 -13.13 16 15 H 0.07 1.96 7.88 -52.49 -0.41 1.55 16 16 C 0.08 1.97 5.22 -17.35 -0.09 1.87 16 17 N -0.80 -21.15 10.91 55.55 0.61 -20.54 16 18 Si 0.91 19.27 29.58 -169.99 -5.03 14.24 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 22 C -0.23 -5.92 8.50 -38.68 -0.33 -6.24 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.25 7.48 -51.93 -0.39 0.86 16 27 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16 35 H 0.39 7.03 8.55 -40.82 -0.35 6.69 16 36 H 0.09 1.77 6.07 -52.49 -0.32 1.45 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 40 H 0.12 3.15 6.26 -52.49 -0.33 2.82 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -27.61 319.64 -8.93 -36.55 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.57 Total: 10.78 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: -2.52 Total: -31.58 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.37 Total: -34.81 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.61 -8.93 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.917 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds