Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 C 1.53004 * 109.47073 * 120.00243 * 2 1 3 5 5 C 1.53002 * 109.46730 * 174.55388 * 4 2 1 6 6 H 1.08993 * 109.47535 * 57.28016 * 5 4 2 7 7 C 1.53008 * 109.46955 * 177.28382 * 5 4 2 8 8 N 1.46501 * 109.47318 * 297.27718 * 5 4 2 9 9 C 1.39683 * 120.00239 * 154.99872 * 8 5 4 10 10 C 1.39337 * 119.94907 * 0.02562 * 9 8 5 11 11 C 1.38482 * 120.42512 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.32385 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89229 * 0.02562 * 12 11 10 14 14 C 1.41409 * 120.20812 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99912 * 28.09014 * 14 13 12 16 16 C 1.39924 * 120.00278 * 208.08588 * 14 13 12 17 17 N 1.30833 * 119.99968 * 12.59343 * 16 14 13 18 18 Si 1.86804 * 120.00003 * 192.59489 * 16 14 13 19 19 H 1.48496 * 109.47088 * 84.99221 * 18 16 14 20 20 H 1.48503 * 109.47028 * 204.98937 * 18 16 14 21 21 H 1.48501 * 109.47210 * 324.98749 * 18 16 14 22 22 C 1.38277 * 119.95374 * 179.72672 * 9 8 5 23 23 H 1.08999 * 109.46906 * 304.61706 * 1 2 3 24 24 H 1.08995 * 109.47221 * 64.61816 * 1 2 3 25 25 H 1.09007 * 109.46829 * 184.62169 * 1 2 3 26 26 H 1.09004 * 109.46979 * 240.00098 * 2 1 3 27 27 H 1.09001 * 109.47359 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47264 * 300.00400 * 3 2 1 29 29 H 1.09004 * 109.47009 * 60.00117 * 3 2 1 30 30 H 1.09000 * 109.47313 * 54.55606 * 4 2 1 31 31 H 1.08995 * 109.47362 * 294.55168 * 4 2 1 32 32 H 1.09007 * 109.46374 * 299.99911 * 7 5 4 33 33 H 1.08993 * 109.47298 * 59.99489 * 7 5 4 34 34 H 1.09000 * 109.47120 * 180.02562 * 7 5 4 35 35 H 0.97007 * 119.99815 * 335.00462 * 8 5 4 36 36 H 1.07995 * 119.79022 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.83759 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.05554 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99865 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.15861 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5639 -0.8409 1.1826 6 1 4.0024 0.1520 1.0839 7 6 4.0801 -1.5015 2.4626 8 7 3.9396 -1.6578 0.0259 9 6 5.1977 -1.5017 -0.5604 10 6 6.0949 -0.5690 -0.0440 11 6 7.3450 -0.4065 -0.6173 12 6 7.7153 -1.1659 -1.7045 13 6 6.8196 -2.1120 -2.2371 14 6 7.1927 -2.8951 -3.3538 15 1 8.2334 -3.1254 -3.5283 16 6 6.2138 -3.3718 -4.2326 17 7 4.9950 -2.9001 -4.1723 18 14 6.6472 -4.6816 -5.4920 19 1 6.5377 -6.0243 -4.8674 20 1 5.7108 -4.5925 -6.6412 21 1 8.0374 -4.4692 -5.9688 22 6 5.5533 -2.2772 -1.6486 23 1 -0.3633 0.5838 0.8457 24 1 -0.3633 0.4405 -0.9284 25 1 -0.3633 -1.0244 0.0828 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.5993 -1.7170 1.2993 31 1 1.7586 -0.1543 2.1366 32 1 3.8006 -0.8936 3.3232 33 1 3.6416 -2.4944 2.5613 34 1 5.1658 -1.5863 2.4153 35 1 3.3145 -2.3071 -0.3328 36 1 5.8140 0.0304 0.8093 37 1 8.0328 0.3196 -0.2096 38 1 8.6911 -1.0352 -2.1484 39 1 4.3162 -3.2308 -4.7813 40 1 4.8607 -3.0041 -2.0464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313473844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -21.026223 kcal Electronic energy + Delta-G solvation = -18060.105358 eV Core-core repulsion = 15451.628156 eV Total energy + Delta-G solvation = -2608.477202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97469 -38.32605 -35.90613 -34.93275 -32.31897 -31.31698 -28.64666 -28.02487 -27.49975 -26.97740 -23.22128 -22.43134 -21.52427 -20.54358 -19.03281 -17.71352 -16.67567 -16.56126 -16.18842 -15.74097 -15.38877 -14.72468 -14.68383 -14.25441 -13.96547 -13.82938 -13.56743 -13.32454 -13.03318 -12.89081 -12.83169 -12.72121 -12.62708 -12.50700 -12.19082 -12.05981 -11.55437 -11.53738 -11.43671 -11.28031 -11.16321 -11.03667 -10.43186 -9.18352 -8.56200 -7.82711 -6.31744 1.11127 1.36347 1.38329 1.50624 1.59333 2.24365 2.84337 2.91631 3.80699 3.87977 4.01802 4.07292 4.38910 4.44992 4.55196 4.56803 4.79086 4.79320 4.82928 4.86614 4.91075 4.98724 5.04031 5.05435 5.10310 5.14923 5.22690 5.33407 5.35912 5.44620 5.46940 5.54363 5.55718 5.66685 6.00307 6.13812 6.24407 6.31472 6.62875 6.98802 7.08758 7.12907 7.30319 8.43810 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.006161 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.988928 B = 4543.323272 C = 5234.145355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.149 3.851 6 H 0.068 0.932 7 C -0.161 4.161 8 N -0.744 5.744 9 C 0.226 3.774 10 C -0.296 4.296 11 C -0.066 4.066 12 C -0.285 4.285 13 C 0.108 3.892 14 C -0.506 4.506 15 H 0.069 0.931 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.254 4.254 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.388 0.612 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.282 0.718 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 3.568 9.045 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.147 4.147 5 C 0.044 3.956 6 H 0.086 0.914 7 C -0.220 4.220 8 N -0.375 5.375 9 C 0.124 3.876 10 C -0.319 4.319 11 C -0.085 4.085 12 C -0.306 4.306 13 C 0.105 3.895 14 C -0.537 4.537 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.456 5.456 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.278 4.278 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.222 0.778 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.031 3.713 9.099 13.347 hybrid contribution 0.228 -0.814 -1.093 1.382 sum -8.803 2.899 8.006 12.247 Atomic orbital electron populations 1.21793 0.94021 1.01960 1.01992 1.21066 0.96336 0.96314 0.98015 1.21828 1.00346 0.96025 1.01908 1.21865 0.92968 1.01241 0.98658 1.20966 0.95374 0.94246 0.85041 0.91425 1.22241 1.00738 1.01260 0.97769 1.44640 1.13869 1.44690 1.34332 1.17733 0.85717 0.93105 0.91008 1.20243 0.96250 1.08012 1.07367 1.20654 0.95711 0.97352 0.94766 1.21037 1.01114 1.04364 1.04047 1.17719 0.91658 0.89373 0.90746 1.19776 0.94642 1.30594 1.08668 0.91290 1.26674 0.94145 0.97356 0.99707 1.69918 1.03877 1.36896 1.34889 0.85251 0.79255 0.78237 0.77096 1.18782 1.19315 1.18484 1.20657 1.00184 1.06801 1.00174 0.91341 0.93174 0.92549 0.93647 0.94199 0.93386 0.91037 0.91348 0.88769 0.90062 0.92757 0.94228 0.77816 0.86925 0.86567 0.89422 0.90727 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 2 C -0.10 -2.42 2.85 -10.79 -0.03 -2.45 16 3 C -0.14 -3.49 8.96 71.98 0.64 -2.85 16 4 C -0.11 -2.43 4.23 30.60 0.13 -2.30 16 5 C 0.15 4.24 2.11 44.99 0.10 4.33 16 6 H 0.07 2.07 4.79 -2.39 -0.01 2.06 16 7 C -0.16 -4.16 9.42 71.98 0.68 -3.48 16 8 N -0.74 -27.58 4.53 -319.11 -1.44 -29.02 16 9 C 0.23 10.55 6.63 38.16 0.25 10.80 16 10 C -0.30 -13.19 8.85 22.59 0.20 -12.99 16 11 C -0.07 -3.06 10.02 22.20 0.22 -2.84 16 12 C -0.28 -14.99 9.79 22.75 0.22 -14.77 16 13 C 0.11 6.18 5.55 -21.31 -0.12 6.06 16 14 C -0.51 -28.97 9.06 23.46 0.21 -28.76 16 15 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 16 C 0.03 1.84 5.22 85.25 0.44 2.28 16 17 N -0.83 -45.23 10.91 21.82 0.24 -45.00 16 18 Si 0.98 40.24 29.58 68.60 2.03 42.26 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.25 -13.83 8.50 22.86 0.19 -13.64 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 26 H 0.04 1.42 7.48 -2.39 -0.02 1.40 16 27 H 0.04 1.13 6.52 -2.39 -0.02 1.11 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.19 7.69 -2.39 -0.02 1.18 16 35 H 0.39 14.22 8.55 -92.70 -0.79 13.42 16 36 H 0.11 4.38 6.07 -2.91 -0.02 4.36 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.10 5.55 6.26 -2.91 -0.02 5.53 16 Total: -1.00 -61.85 319.64 4.85 -57.00 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.22 Total: 37.44 kcal Atomic # 6 Polarization: -66.50 SS G_CDS: 3.81 Total: -62.69 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.21 Total: -74.02 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -61.85 4.85 -57.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.974 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds