Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46749 * 2 1 4 4 C 1.53001 * 109.47299 * 240.00262 * 2 1 3 5 5 C 1.53001 * 109.47495 * 185.56927 * 4 2 1 6 6 H 1.09001 * 109.46949 * 303.82394 * 5 4 2 7 7 C 1.52996 * 109.47382 * 183.82255 * 5 4 2 8 8 N 1.46496 * 109.47010 * 63.82008 * 5 4 2 9 9 C 1.39681 * 120.00608 * 205.00451 * 8 5 4 10 10 C 1.39335 * 119.94584 * 359.97438 * 9 8 5 11 11 C 1.38479 * 120.42462 * 179.97438 * 10 9 8 12 12 C 1.37693 * 120.32350 * 359.97438 * 11 10 9 13 13 C 1.40745 * 119.89137 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.20723 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99882 * 28.92940 * 14 13 12 16 16 C 1.39924 * 120.00064 * 208.93570 * 14 13 12 17 17 N 1.30829 * 120.00145 * 10.68285 * 16 14 13 18 18 Si 1.86802 * 120.00110 * 190.68782 * 16 14 13 19 19 H 1.48494 * 109.47291 * 89.99888 * 18 16 14 20 20 H 1.48496 * 109.47407 * 209.99939 * 18 16 14 21 21 H 1.48509 * 109.46874 * 329.99790 * 18 16 14 22 22 C 1.38273 * 119.95762 * 179.72550 * 9 8 5 23 23 H 1.09001 * 109.46666 * 175.13016 * 1 2 3 24 24 H 1.08993 * 109.47279 * 295.12087 * 1 2 3 25 25 H 1.09002 * 109.47623 * 55.12743 * 1 2 3 26 26 H 1.08994 * 109.47591 * 120.00251 * 2 1 3 27 27 H 1.09001 * 109.47040 * 60.00284 * 3 2 1 28 28 H 1.09007 * 109.47050 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47108 * 299.99787 * 3 2 1 30 30 H 1.08997 * 109.47106 * 305.57593 * 4 2 1 31 31 H 1.09005 * 109.47050 * 65.57075 * 4 2 1 32 32 H 1.08994 * 109.47162 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.46793 * 300.00354 * 7 5 4 34 34 H 1.08999 * 109.47238 * 59.99961 * 7 5 4 35 35 H 0.97000 * 119.99863 * 25.00213 * 8 5 4 36 36 H 1.08001 * 119.79450 * 359.96027 * 10 9 8 37 37 H 1.08005 * 119.84153 * 180.02562 * 11 10 9 38 38 H 1.07993 * 120.05121 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00098 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.15821 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5636 -0.8436 -1.1813 6 1 4.0027 0.1469 -1.0616 7 6 4.0824 -1.4788 -2.4729 8 7 3.9355 -1.6837 -0.0402 9 6 5.1923 -1.5405 0.5523 10 6 6.0917 -0.5986 0.0569 11 6 7.3400 -0.4480 0.6370 12 6 7.7060 -1.2278 1.7112 13 6 6.8081 -2.1834 2.2226 14 6 7.1769 -2.9875 3.3258 15 1 7.8772 -2.6122 4.0574 16 6 6.6347 -4.2694 3.4696 17 7 5.9560 -4.8064 2.4885 18 14 6.8797 -5.2139 5.0624 19 1 5.7658 -4.9083 5.9956 20 1 6.8997 -6.6709 4.7760 21 1 8.1686 -4.8136 5.6820 22 6 5.5402 -2.3300 1.6329 23 1 -0.3633 -1.0240 -0.0872 24 1 -0.3633 0.4362 0.9304 25 1 -0.3634 0.5876 -0.8431 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.5975 -1.7160 -1.3007 31 1 1.7604 -0.1529 -2.1365 32 1 5.1677 -1.5664 -2.4242 33 1 3.6432 -2.4692 -2.5925 34 1 3.8057 -0.8537 -3.3218 35 1 3.3090 -2.3394 0.3039 36 1 5.8136 0.0178 -0.7852 37 1 8.0296 0.2853 0.2456 38 1 8.6808 -1.1070 2.1600 39 1 5.5804 -5.6952 2.5880 40 1 4.8425 -3.0579 2.0200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313473846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = -7.610489 kcal Electronic energy + Delta-G solvation = -18022.673018 eV Core-core repulsion = 15414.777567 eV Total energy + Delta-G solvation = -2607.895452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.41670 -36.83594 -34.40110 -33.18277 -30.83869 -29.36843 -27.11434 -26.99580 -26.31198 -25.08674 -21.61590 -20.74344 -20.07367 -19.23908 -17.18599 -15.98500 -15.16380 -14.94702 -14.59833 -14.27278 -14.25226 -13.34800 -13.05414 -12.70872 -12.52314 -12.31628 -12.17846 -12.12431 -11.76127 -11.52189 -11.47783 -11.33933 -11.05730 -10.96080 -10.59014 -10.54755 -10.44338 -10.27640 -10.07526 -9.54941 -9.36473 -9.20527 -8.70390 -7.19668 -6.61490 -6.06882 -4.27333 2.92366 3.13668 3.17409 3.28174 3.38767 4.03681 4.38623 4.81374 4.85934 5.03004 5.04029 5.50523 5.53164 5.63797 5.69119 5.79773 5.85104 5.89560 5.92311 6.03475 6.04172 6.08125 6.23273 6.31489 6.35555 6.51521 6.53375 6.58237 6.71132 6.94518 7.18263 7.21422 7.45967 7.52153 7.88780 8.01958 8.17085 8.25397 8.57307 8.80124 8.92188 9.08046 9.18484 10.37016 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.005860 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.565620 B = 4776.785213 C = 5274.568680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.119 4.119 5 C 0.154 3.846 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.752 5.752 9 C 0.217 3.783 10 C -0.295 4.295 11 C -0.070 4.070 12 C -0.255 4.255 13 C 0.138 3.862 14 C -0.467 4.467 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.803 5.803 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.224 4.224 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.387 0.613 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 5.672 -5.524 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.157 4.157 5 C 0.048 3.952 6 H 0.093 0.907 7 C -0.226 4.226 8 N -0.385 5.385 9 C 0.119 3.881 10 C -0.317 4.317 11 C -0.089 4.089 12 C -0.276 4.276 13 C 0.135 3.865 14 C -0.497 4.497 15 H 0.092 0.908 16 C -0.141 4.141 17 N -0.429 5.429 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.248 4.248 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.221 0.779 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.791 5.594 -5.729 11.891 hybrid contribution -0.079 -0.852 0.703 1.108 sum -8.870 4.741 -5.026 11.243 Atomic orbital electron populations 1.21848 0.95862 1.01341 1.01265 1.21091 0.94790 0.96582 0.99112 1.21860 1.01816 0.95791 1.00904 1.21920 0.95483 1.00465 0.97881 1.20704 0.93172 0.95011 0.86357 0.90665 1.22303 1.02395 1.00586 0.97334 1.44505 1.15679 1.43232 1.35050 1.17653 0.84184 0.94008 0.92299 1.19933 0.96952 1.07512 1.07346 1.20295 0.94927 0.97613 0.96053 1.20901 0.99436 1.05314 1.01902 1.17335 0.89510 0.89080 0.90559 1.19536 1.23584 0.98603 1.08010 0.90787 1.25833 0.93309 0.97959 0.96963 1.69840 1.27630 1.15093 1.30373 0.86349 0.79716 0.78425 0.82342 1.19551 1.20501 1.18793 1.20773 0.98501 1.04938 1.00602 0.92952 0.92993 0.93120 0.90415 0.93136 0.91988 0.93292 0.91975 0.91487 0.91984 0.93039 0.93166 0.77924 0.89553 0.89763 0.89486 0.91409 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.10 -1.21 2.86 -90.62 -0.26 -1.47 16 3 C -0.15 -1.79 8.96 37.16 0.33 -1.46 16 4 C -0.12 -1.48 4.22 -26.73 -0.11 -1.59 16 5 C 0.15 2.35 2.13 -67.93 -0.14 2.20 16 6 H 0.08 1.21 4.75 -51.93 -0.25 0.97 16 7 C -0.17 -2.46 9.42 37.16 0.35 -2.11 16 8 N -0.75 -14.04 4.56 -52.22 -0.24 -14.28 16 9 C 0.22 5.02 6.63 -83.86 -0.56 4.46 16 10 C -0.29 -6.67 8.85 -39.08 -0.35 -7.02 16 11 C -0.07 -1.63 10.02 -39.69 -0.40 -2.03 16 12 C -0.25 -6.52 9.79 -38.83 -0.38 -6.90 16 13 C 0.14 3.80 5.54 -106.85 -0.59 3.21 16 14 C -0.47 -12.79 9.06 -37.74 -0.34 -13.14 16 15 H 0.07 1.96 7.87 -52.48 -0.41 1.55 16 16 C 0.08 1.95 5.25 -17.35 -0.09 1.85 16 17 N -0.80 -21.32 10.86 55.55 0.60 -20.72 16 18 Si 0.91 19.32 29.57 -169.99 -5.03 14.29 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.22 -5.88 8.49 -38.68 -0.33 -6.21 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.86 6.50 -51.92 -0.34 0.52 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.39 7.04 8.60 -40.82 -0.35 6.69 16 36 H 0.09 1.77 6.07 -52.49 -0.32 1.45 16 37 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.18 6.25 -52.48 -0.33 2.86 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -27.72 319.70 -8.94 -36.66 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.57 Total: 10.61 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -2.53 Total: -31.39 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.37 Total: -35.00 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.72 -8.94 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.054 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds