Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46749 * 2 1 4 4 C 1.53001 * 109.47299 * 240.00262 * 2 1 3 5 5 C 1.53001 * 109.47495 * 185.56927 * 4 2 1 6 6 H 1.09001 * 109.46949 * 303.82394 * 5 4 2 7 7 C 1.52996 * 109.47382 * 183.82255 * 5 4 2 8 8 N 1.46496 * 109.47010 * 63.82008 * 5 4 2 9 9 C 1.39681 * 120.00608 * 205.00451 * 8 5 4 10 10 C 1.39335 * 119.94584 * 359.97438 * 9 8 5 11 11 C 1.38479 * 120.42462 * 179.97438 * 10 9 8 12 12 C 1.37693 * 120.32350 * 359.97438 * 11 10 9 13 13 C 1.40745 * 119.89137 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.20723 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99882 * 28.92940 * 14 13 12 16 16 C 1.39924 * 120.00064 * 208.93570 * 14 13 12 17 17 N 1.30829 * 120.00145 * 10.68285 * 16 14 13 18 18 Si 1.86802 * 120.00110 * 190.68782 * 16 14 13 19 19 H 1.48494 * 109.47291 * 89.99888 * 18 16 14 20 20 H 1.48496 * 109.47407 * 209.99939 * 18 16 14 21 21 H 1.48509 * 109.46874 * 329.99790 * 18 16 14 22 22 C 1.38273 * 119.95762 * 179.72550 * 9 8 5 23 23 H 1.09001 * 109.46666 * 175.13016 * 1 2 3 24 24 H 1.08993 * 109.47279 * 295.12087 * 1 2 3 25 25 H 1.09002 * 109.47623 * 55.12743 * 1 2 3 26 26 H 1.08994 * 109.47591 * 120.00251 * 2 1 3 27 27 H 1.09001 * 109.47040 * 60.00284 * 3 2 1 28 28 H 1.09007 * 109.47050 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47108 * 299.99787 * 3 2 1 30 30 H 1.08997 * 109.47106 * 305.57593 * 4 2 1 31 31 H 1.09005 * 109.47050 * 65.57075 * 4 2 1 32 32 H 1.08994 * 109.47162 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.46793 * 300.00354 * 7 5 4 34 34 H 1.08999 * 109.47238 * 59.99961 * 7 5 4 35 35 H 0.97000 * 119.99863 * 25.00213 * 8 5 4 36 36 H 1.08001 * 119.79450 * 359.96027 * 10 9 8 37 37 H 1.08005 * 119.84153 * 180.02562 * 11 10 9 38 38 H 1.07993 * 120.05121 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00098 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.15821 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5636 -0.8436 -1.1813 6 1 4.0027 0.1469 -1.0616 7 6 4.0824 -1.4788 -2.4729 8 7 3.9355 -1.6837 -0.0402 9 6 5.1923 -1.5405 0.5523 10 6 6.0917 -0.5986 0.0569 11 6 7.3400 -0.4480 0.6370 12 6 7.7060 -1.2278 1.7112 13 6 6.8081 -2.1834 2.2226 14 6 7.1769 -2.9875 3.3258 15 1 7.8772 -2.6122 4.0574 16 6 6.6347 -4.2694 3.4696 17 7 5.9560 -4.8064 2.4885 18 14 6.8797 -5.2139 5.0624 19 1 5.7658 -4.9083 5.9956 20 1 6.8997 -6.6709 4.7760 21 1 8.1686 -4.8136 5.6820 22 6 5.5402 -2.3300 1.6329 23 1 -0.3633 -1.0240 -0.0872 24 1 -0.3633 0.4362 0.9304 25 1 -0.3634 0.5876 -0.8431 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.5975 -1.7160 -1.3007 31 1 1.7604 -0.1529 -2.1365 32 1 5.1677 -1.5664 -2.4242 33 1 3.6432 -2.4692 -2.5925 34 1 3.8057 -0.8537 -3.3218 35 1 3.3090 -2.3394 0.3039 36 1 5.8136 0.0178 -0.7852 37 1 8.0296 0.2853 0.2456 38 1 8.6808 -1.1070 2.1600 39 1 5.5804 -5.6952 2.5880 40 1 4.8425 -3.0579 2.0200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313473846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = -21.087295 kcal Electronic energy + Delta-G solvation = -18023.257417 eV Core-core repulsion = 15414.777567 eV Total energy + Delta-G solvation = -2608.479850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97611 -38.32633 -35.90612 -34.93229 -32.32102 -31.31374 -28.65204 -28.01392 -27.50275 -26.97937 -23.22073 -22.43362 -21.51534 -20.55184 -19.03758 -17.71222 -16.68512 -16.54836 -16.18369 -15.73601 -15.38490 -14.71046 -14.67560 -14.30281 -13.96119 -13.83010 -13.58356 -13.26391 -13.02526 -12.90187 -12.86554 -12.74089 -12.58743 -12.45895 -12.28558 -12.01268 -11.59406 -11.47927 -11.45409 -11.26475 -11.15835 -11.06764 -10.43332 -9.17144 -8.54849 -7.82905 -6.32490 1.10977 1.36095 1.38395 1.51072 1.58975 2.24583 2.84418 2.92006 3.80463 3.87281 4.02270 4.07696 4.38316 4.45261 4.54835 4.57192 4.78555 4.79707 4.82997 4.86767 4.90887 4.99039 5.04067 5.05633 5.10985 5.15326 5.22839 5.33441 5.35751 5.44027 5.47776 5.54733 5.55746 5.66794 6.00227 6.13517 6.24771 6.31409 6.63108 6.98924 7.08822 7.12747 7.30089 8.44807 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.005860 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.565620 B = 4776.785213 C = 5274.568680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.150 3.850 6 H 0.071 0.929 7 C -0.163 4.163 8 N -0.744 5.744 9 C 0.225 3.775 10 C -0.295 4.295 11 C -0.067 4.067 12 C -0.284 4.284 13 C 0.107 3.893 14 C -0.506 4.506 15 H 0.069 0.931 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.252 4.252 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.388 0.612 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.282 0.718 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 6.314 -6.712 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.045 3.955 6 H 0.089 0.911 7 C -0.221 4.221 8 N -0.375 5.375 9 C 0.123 3.877 10 C -0.317 4.317 11 C -0.086 4.086 12 C -0.304 4.304 13 C 0.104 3.896 14 C -0.536 4.536 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.276 4.276 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.156 6.253 -6.952 13.804 hybrid contribution 0.278 -0.959 0.946 1.375 sum -9.877 5.294 -6.006 12.714 Atomic orbital electron populations 1.21797 0.94064 1.01912 1.02061 1.21066 0.96297 0.96383 0.97920 1.21841 1.00450 0.95877 1.02005 1.21869 0.92876 1.01208 0.98854 1.20961 0.95447 0.93981 0.85156 0.91108 1.22249 1.00605 1.01290 0.97996 1.44641 1.14036 1.43350 1.35507 1.17739 0.85808 0.92891 0.91216 1.20252 0.96531 1.07255 1.07705 1.20659 0.95715 0.97295 0.94884 1.21047 0.99607 1.06347 1.03425 1.17725 0.90492 0.90028 0.91340 1.19785 1.25061 1.00004 1.08799 0.91293 1.26675 0.92562 0.98345 1.00371 1.69914 1.28150 1.15688 1.32177 0.85223 0.79731 0.77144 0.77643 1.18804 1.19328 1.18469 1.20685 0.98256 1.06154 1.02550 0.92672 0.92940 0.91467 0.93371 0.93086 0.94012 0.91208 0.91540 0.88836 0.94494 0.93037 0.89976 0.77813 0.86901 0.86536 0.89391 0.90760 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.10 -2.26 2.86 -10.79 -0.03 -2.29 16 3 C -0.14 -3.24 8.96 71.98 0.65 -2.60 16 4 C -0.11 -2.42 4.22 30.60 0.13 -2.29 16 5 C 0.15 4.26 2.13 44.99 0.10 4.36 16 6 H 0.07 2.12 4.75 -2.39 -0.01 2.11 16 7 C -0.16 -4.39 9.42 71.98 0.68 -3.71 16 8 N -0.74 -27.60 4.56 -319.14 -1.45 -29.05 16 9 C 0.23 10.50 6.63 38.16 0.25 10.75 16 10 C -0.29 -13.11 8.85 22.59 0.20 -12.91 16 11 C -0.07 -3.09 10.02 22.20 0.22 -2.86 16 12 C -0.28 -14.90 9.79 22.75 0.22 -14.68 16 13 C 0.11 6.13 5.54 -21.31 -0.12 6.01 16 14 C -0.51 -28.96 9.06 23.46 0.21 -28.74 16 15 H 0.07 3.84 7.87 -2.91 -0.02 3.82 16 16 C 0.03 1.78 5.25 85.25 0.45 2.22 16 17 N -0.83 -45.54 10.86 21.82 0.24 -45.30 16 18 Si 0.98 40.32 29.57 68.60 2.03 42.35 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 C -0.25 -13.74 8.49 22.85 0.19 -13.55 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.39 7.55 -2.39 -0.02 1.37 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.10 6.50 -2.38 -0.02 1.08 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.04 1.17 7.69 -2.39 -0.02 1.16 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.39 14.23 8.60 -92.71 -0.80 13.43 16 36 H 0.11 4.38 6.07 -2.91 -0.02 4.36 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.28 14.02 8.30 -92.70 -0.77 13.25 16 40 H 0.10 5.62 6.25 -2.91 -0.02 5.60 16 Total: -1.00 -61.89 319.70 4.84 -57.05 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.21 Total: 37.18 kcal Atomic # 6 Polarization: -66.04 SS G_CDS: 3.81 Total: -62.23 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.22 Total: -74.35 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -61.89 4.84 -57.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.963 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds