Wall clock time and date at job start Mon Mar 30 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46796 * 2 1 4 4 C 1.53000 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47322 * 305.00356 * 4 3 2 6 6 C 1.53005 * 109.47121 * 65.00300 * 4 3 2 7 7 C 1.53000 * 109.47161 * 184.99992 * 4 3 2 8 8 N 1.46496 * 109.47140 * 175.00063 * 7 4 3 9 9 C 1.39692 * 120.00040 * 180.02562 * 8 7 4 10 10 C 1.39337 * 119.94740 * 359.72800 * 9 8 7 11 11 C 1.38478 * 120.41745 * 179.71873 * 10 9 8 12 12 C 1.37691 * 120.32781 * 0.55863 * 11 10 9 13 13 C 1.40745 * 119.89094 * 359.71922 * 12 11 10 14 14 C 1.41414 * 120.20651 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99954 * 150.19303 * 14 13 12 16 16 C 1.39925 * 119.99630 * 330.19044 * 14 13 12 17 17 N 1.30840 * 119.99702 * 161.73065 * 16 14 13 18 18 Si 1.86803 * 120.00376 * 341.73103 * 16 14 13 19 19 H 1.48495 * 109.46827 * 95.41445 * 18 16 14 20 20 H 1.48497 * 109.47047 * 215.41168 * 18 16 14 21 21 H 1.48497 * 109.46964 * 335.41190 * 18 16 14 22 22 C 1.38276 * 119.95249 * 180.02562 * 9 8 7 23 23 H 1.09007 * 109.46968 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47157 * 299.99520 * 1 2 3 25 25 H 1.08999 * 109.47415 * 59.99953 * 1 2 3 26 26 H 1.09001 * 109.46978 * 240.00013 * 2 1 3 27 27 H 1.08996 * 109.46843 * 120.00528 * 2 1 3 28 28 H 1.08997 * 109.46876 * 60.00308 * 3 2 1 29 29 H 1.08999 * 109.47177 * 300.00193 * 3 2 1 30 30 H 1.09004 * 109.46564 * 299.99846 * 6 4 3 31 31 H 1.09001 * 109.47240 * 180.02562 * 6 4 3 32 32 H 1.08994 * 109.46977 * 59.99844 * 6 4 3 33 33 H 1.08995 * 109.47095 * 295.00620 * 7 4 3 34 34 H 1.09007 * 109.46908 * 55.00007 * 7 4 3 35 35 H 0.96998 * 120.00248 * 0.02562 * 8 7 4 36 36 H 1.07998 * 119.78925 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.83284 * 180.27240 * 11 10 9 38 38 H 1.07996 * 120.05405 * 179.74388 * 12 11 10 39 39 H 0.96996 * 119.99513 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.16234 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0799 2.8795 0.1264 8 7 5.5398 2.8708 0.2470 9 6 6.2373 4.0743 0.3753 10 6 5.5437 5.2828 0.3827 11 6 6.2248 6.4812 0.5151 12 6 7.5969 6.4922 0.6296 13 6 8.3114 5.2797 0.6179 14 6 9.7207 5.2831 0.7356 15 1 10.2262 4.4471 1.1960 16 6 10.4601 6.3697 0.2555 17 7 11.6888 6.5567 0.6644 18 14 9.6930 7.5534 -0.9693 19 1 9.1322 8.7215 -0.2440 20 1 10.7298 8.0162 -1.9264 21 1 8.6073 6.8634 -1.7111 22 6 7.6154 4.0650 0.4886 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9563 -0.8900 30 1 3.7171 -0.1911 -1.3960 31 1 5.1705 0.8323 -1.3058 32 1 3.7175 1.4221 -2.1484 33 1 3.7918 3.4461 -0.7591 34 1 3.6448 3.3433 1.0118 35 1 6.0222 2.0293 0.2379 36 1 4.4678 5.2845 0.2894 37 1 5.6773 7.4122 0.5241 38 1 8.1239 7.4297 0.7285 39 1 12.2012 7.3101 0.3318 40 1 8.1543 3.1291 0.4786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313476132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:30 Heat of formation + Delta-G solvation = -11.974619 kcal Electronic energy + Delta-G solvation = -17323.840675 eV Core-core repulsion = 14715.755980 eV Total energy + Delta-G solvation = -2608.084694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.41211 -37.21281 -34.75212 -33.25723 -31.86766 -30.13564 -28.30867 -26.90031 -25.26408 -24.88232 -21.82789 -21.10925 -20.31071 -19.73236 -17.42499 -15.87333 -15.73720 -15.44088 -14.80277 -14.56145 -14.43387 -13.88950 -13.47160 -13.10579 -12.97516 -12.50929 -12.49570 -12.37190 -12.03027 -11.81052 -11.69043 -11.39835 -11.17675 -10.93004 -10.81726 -10.69506 -10.57549 -10.42945 -10.34096 -9.70825 -9.45295 -9.18816 -8.83493 -7.54588 -6.84345 -6.39988 -4.40028 2.74489 2.97384 3.21583 3.31506 3.43695 4.08795 4.10648 4.64777 4.66876 4.71053 4.83734 4.99986 5.13108 5.27555 5.49217 5.52538 5.57641 5.61579 5.71339 5.77378 5.83288 5.93909 5.96168 6.03812 6.06517 6.10432 6.25856 6.34438 6.38473 6.63422 6.84529 6.91449 7.05509 7.37854 7.63148 7.75055 7.85229 8.04777 8.41137 8.50225 8.56568 8.83469 8.96524 10.18682 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049745 B = 0.004002 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.734496 B = 6995.046833 C = 7216.982090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.103 4.103 5 H 0.073 0.927 6 C -0.147 4.147 7 C 0.139 3.861 8 N -0.760 5.760 9 C 0.235 3.765 10 C -0.301 4.301 11 C -0.049 4.049 12 C -0.273 4.273 13 C 0.126 3.874 14 C -0.452 4.452 15 H 0.088 0.912 16 C 0.085 3.915 17 N -0.815 5.815 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.244 1.244 22 C -0.279 4.279 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.389 0.611 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.283 0.717 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 -8.908 -2.872 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.122 4.122 5 H 0.091 0.909 6 C -0.204 4.204 7 C 0.014 3.986 8 N -0.393 5.393 9 C 0.136 3.864 10 C -0.323 4.323 11 C -0.067 4.067 12 C -0.293 4.293 13 C 0.122 3.878 14 C -0.481 4.481 15 H 0.106 0.894 16 C -0.133 4.133 17 N -0.440 5.440 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.223 1.223 21 H -0.168 1.168 22 C -0.303 4.303 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.207 -8.737 -2.863 18.634 hybrid contribution 0.038 0.326 -0.447 0.554 sum -16.169 -8.411 -3.310 18.524 Atomic orbital electron populations 1.21781 0.96074 1.01388 1.01784 1.21572 0.95598 0.97021 1.02087 1.21584 0.94339 0.96822 1.02278 1.21366 0.95500 0.96488 0.98825 0.90883 1.21870 1.01372 1.00247 0.96927 1.21135 0.82042 0.95219 1.00193 1.44502 1.04534 1.05935 1.84302 1.17563 0.90940 0.85001 0.92932 1.19908 0.97217 0.91432 1.23786 1.20367 0.94121 0.95727 0.96529 1.20894 0.93620 0.97337 1.17423 1.17444 0.93256 0.90520 0.86579 1.19444 0.90296 1.04038 1.34308 0.89439 1.26137 0.94554 0.96842 0.95722 1.69716 1.10485 1.27657 1.36120 0.86270 0.79029 0.80100 0.80408 1.19818 1.22265 1.16756 1.20402 0.91020 0.97685 1.21165 0.92968 0.92794 0.92808 0.91791 0.92122 0.91812 0.91792 0.92724 0.92403 0.92652 0.93208 0.93256 0.77706 0.89082 0.89089 0.88578 0.90672 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.11 -1.02 4.68 -26.73 -0.13 -1.15 16 4 C -0.10 -1.10 2.42 -90.62 -0.22 -1.32 16 5 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.15 -1.52 8.82 37.16 0.33 -1.19 16 7 C 0.14 1.94 4.30 -4.04 -0.02 1.93 16 8 N -0.76 -12.97 5.46 -58.68 -0.32 -13.29 16 9 C 0.24 5.10 6.64 -83.85 -0.56 4.54 16 10 C -0.30 -6.52 9.32 -39.08 -0.36 -6.89 16 11 C -0.05 -1.10 10.01 -39.69 -0.40 -1.50 16 12 C -0.27 -6.90 7.17 -38.83 -0.28 -7.17 16 13 C 0.13 3.33 5.10 -106.85 -0.55 2.78 16 14 C -0.45 -12.71 9.57 -37.74 -0.36 -13.07 16 15 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 16 C 0.09 2.33 5.40 -17.34 -0.09 2.23 16 17 N -0.82 -22.46 13.93 55.55 0.77 -21.69 16 18 Si 0.91 21.77 24.52 -169.99 -4.17 17.60 16 19 H -0.27 -6.29 6.71 56.52 0.38 -5.91 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.24 -5.99 6.86 56.52 0.39 -5.60 16 22 C -0.28 -6.75 9.63 -38.68 -0.37 -7.12 16 23 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.49 6.57 -51.93 -0.34 0.14 16 31 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.05 0.71 7.95 -51.92 -0.41 0.30 16 35 H 0.39 6.09 7.66 -40.82 -0.31 5.77 16 36 H 0.09 1.76 6.70 -52.49 -0.35 1.41 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16 39 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 40 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -28.57 316.15 -8.35 -36.92 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.61 Total: 5.51 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -2.79 Total: -29.82 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.45 Total: -34.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.17 Total: 17.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.57 -8.35 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313476132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.947 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds