Wall clock time and date at job start Mon Mar 30 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46796 * 2 1 4 4 C 1.53000 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47322 * 305.00356 * 4 3 2 6 6 C 1.53005 * 109.47121 * 65.00300 * 4 3 2 7 7 C 1.53000 * 109.47161 * 184.99992 * 4 3 2 8 8 N 1.46496 * 109.47140 * 175.00063 * 7 4 3 9 9 C 1.39692 * 120.00040 * 180.02562 * 8 7 4 10 10 C 1.39337 * 119.94740 * 359.72800 * 9 8 7 11 11 C 1.38478 * 120.41745 * 179.71873 * 10 9 8 12 12 C 1.37691 * 120.32781 * 0.55863 * 11 10 9 13 13 C 1.40745 * 119.89094 * 359.71922 * 12 11 10 14 14 C 1.41414 * 120.20651 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99954 * 150.19303 * 14 13 12 16 16 C 1.39925 * 119.99630 * 330.19044 * 14 13 12 17 17 N 1.30840 * 119.99702 * 161.73065 * 16 14 13 18 18 Si 1.86803 * 120.00376 * 341.73103 * 16 14 13 19 19 H 1.48495 * 109.46827 * 95.41445 * 18 16 14 20 20 H 1.48497 * 109.47047 * 215.41168 * 18 16 14 21 21 H 1.48497 * 109.46964 * 335.41190 * 18 16 14 22 22 C 1.38276 * 119.95249 * 180.02562 * 9 8 7 23 23 H 1.09007 * 109.46968 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47157 * 299.99520 * 1 2 3 25 25 H 1.08999 * 109.47415 * 59.99953 * 1 2 3 26 26 H 1.09001 * 109.46978 * 240.00013 * 2 1 3 27 27 H 1.08996 * 109.46843 * 120.00528 * 2 1 3 28 28 H 1.08997 * 109.46876 * 60.00308 * 3 2 1 29 29 H 1.08999 * 109.47177 * 300.00193 * 3 2 1 30 30 H 1.09004 * 109.46564 * 299.99846 * 6 4 3 31 31 H 1.09001 * 109.47240 * 180.02562 * 6 4 3 32 32 H 1.08994 * 109.46977 * 59.99844 * 6 4 3 33 33 H 1.08995 * 109.47095 * 295.00620 * 7 4 3 34 34 H 1.09007 * 109.46908 * 55.00007 * 7 4 3 35 35 H 0.96998 * 120.00248 * 0.02562 * 8 7 4 36 36 H 1.07998 * 119.78925 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.83284 * 180.27240 * 11 10 9 38 38 H 1.07996 * 120.05405 * 179.74388 * 12 11 10 39 39 H 0.96996 * 119.99513 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.16234 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0799 2.8795 0.1264 8 7 5.5398 2.8708 0.2470 9 6 6.2373 4.0743 0.3753 10 6 5.5437 5.2828 0.3827 11 6 6.2248 6.4812 0.5151 12 6 7.5969 6.4922 0.6296 13 6 8.3114 5.2797 0.6179 14 6 9.7207 5.2831 0.7356 15 1 10.2262 4.4471 1.1960 16 6 10.4601 6.3697 0.2555 17 7 11.6888 6.5567 0.6644 18 14 9.6930 7.5534 -0.9693 19 1 9.1322 8.7215 -0.2440 20 1 10.7298 8.0162 -1.9264 21 1 8.6073 6.8634 -1.7111 22 6 7.6154 4.0650 0.4886 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9563 -0.8900 30 1 3.7171 -0.1911 -1.3960 31 1 5.1705 0.8323 -1.3058 32 1 3.7175 1.4221 -2.1484 33 1 3.7918 3.4461 -0.7591 34 1 3.6448 3.3433 1.0118 35 1 6.0222 2.0293 0.2379 36 1 4.4678 5.2845 0.2894 37 1 5.6773 7.4122 0.5241 38 1 8.1239 7.4297 0.7285 39 1 12.2012 7.3101 0.3318 40 1 8.1543 3.1291 0.4786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313476132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:29 Heat of formation + Delta-G solvation = -27.459846 kcal Electronic energy + Delta-G solvation = -17324.512165 eV Core-core repulsion = 14715.755980 eV Total energy + Delta-G solvation = -2608.756184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97742 -38.41311 -36.17852 -34.99358 -32.94038 -32.03614 -29.83839 -27.71017 -26.97761 -26.25671 -22.90629 -22.77486 -21.71825 -20.87519 -19.28612 -17.71009 -16.98190 -16.58756 -16.34857 -16.18062 -15.48421 -15.14067 -14.75622 -14.44029 -14.28448 -14.08161 -13.95780 -13.60491 -13.35252 -13.09291 -12.75718 -12.73693 -12.54063 -12.33546 -12.24251 -11.89498 -11.67365 -11.52861 -11.43162 -11.35142 -11.23431 -11.04685 -10.52993 -9.47038 -8.86852 -8.05923 -6.49279 0.86630 1.10767 1.29979 1.44499 1.53687 2.17892 2.67572 2.74453 3.62265 3.79850 3.94779 4.03684 4.29876 4.37259 4.42803 4.50460 4.62035 4.71757 4.73635 4.77868 4.79980 4.93786 4.97940 5.01116 5.06860 5.09963 5.11379 5.21068 5.22048 5.30399 5.38324 5.53279 5.53733 5.56774 5.78866 5.87988 6.00390 6.11751 6.39567 6.71550 6.83790 6.91978 7.11473 8.22245 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049745 B = 0.004002 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.734496 B = 6995.046833 C = 7216.982090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.094 4.094 5 H 0.074 0.926 6 C -0.146 4.146 7 C 0.135 3.865 8 N -0.750 5.750 9 C 0.242 3.758 10 C -0.291 4.291 11 C -0.048 4.048 12 C -0.295 4.295 13 C 0.107 3.893 14 C -0.490 4.490 15 H 0.051 0.949 16 C 0.048 3.952 17 N -0.855 5.855 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.256 1.256 22 C -0.298 4.298 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.396 0.604 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.292 0.708 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 -8.938 -3.754 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.113 4.113 5 H 0.092 0.908 6 C -0.203 4.203 7 C 0.011 3.989 8 N -0.381 5.381 9 C 0.139 3.861 10 C -0.314 4.314 11 C -0.066 4.066 12 C -0.316 4.316 13 C 0.104 3.896 14 C -0.520 4.520 15 H 0.070 0.930 16 C -0.166 4.166 17 N -0.482 5.482 18 Si 0.796 3.204 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.179 1.179 22 C -0.322 4.322 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.231 0.769 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.539 -8.806 -3.740 21.756 hybrid contribution 0.842 0.167 -0.133 0.868 sum -18.698 -8.639 -3.873 20.958 Atomic orbital electron populations 1.21777 0.95433 1.01902 1.01905 1.21555 0.96156 0.96170 1.02236 1.21554 0.92821 0.97720 1.02507 1.21298 0.96632 0.94275 0.99053 0.90779 1.21864 1.00536 1.01289 0.96621 1.21368 0.79694 0.97604 1.00245 1.44636 1.06024 1.04813 1.82633 1.17650 0.90240 0.86942 0.91258 1.20340 0.98834 0.90858 1.21361 1.20764 0.93225 0.97740 0.94913 1.20965 0.94955 0.96571 1.19075 1.17597 0.92713 0.92105 0.87191 1.19447 0.91594 1.04068 1.36876 0.93032 1.26820 0.94882 0.98071 0.96793 1.69741 1.11643 1.29059 1.37731 0.85397 0.78190 0.78389 0.78443 1.18440 1.20631 1.17941 1.20513 0.92538 0.97044 1.22143 0.92323 0.92762 0.92622 0.91515 0.92131 0.91678 0.91498 0.91070 0.93665 0.92771 0.93069 0.93008 0.76901 0.85895 0.85618 0.89006 0.89728 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.62 5.69 30.59 0.17 -1.45 16 3 C -0.11 -1.63 4.68 30.59 0.14 -1.49 16 4 C -0.09 -1.73 2.42 -10.79 -0.03 -1.76 16 5 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 6 C -0.15 -2.64 8.82 71.98 0.63 -2.01 16 7 C 0.13 3.33 4.30 86.38 0.37 3.70 16 8 N -0.75 -23.88 5.46 -339.58 -1.85 -25.73 16 9 C 0.24 10.02 6.64 38.16 0.25 10.28 16 10 C -0.29 -11.65 9.32 22.59 0.21 -11.44 16 11 C -0.05 -2.04 10.01 22.20 0.22 -1.82 16 12 C -0.30 -14.73 7.17 22.75 0.16 -14.57 16 13 C 0.11 5.79 5.10 -21.31 -0.11 5.69 16 14 C -0.49 -29.03 9.57 23.46 0.22 -28.81 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C 0.05 2.71 5.40 85.25 0.46 3.17 16 17 N -0.85 -48.90 13.93 21.82 0.30 -48.60 16 18 Si 0.97 45.27 24.52 68.60 1.68 46.95 16 19 H -0.26 -11.40 6.71 99.48 0.67 -10.73 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.26 -12.23 6.86 99.48 0.68 -11.55 16 22 C -0.30 -14.56 9.63 22.85 0.22 -14.34 16 23 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.84 6.57 -2.39 -0.02 0.83 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.06 6.57 -2.38 -0.02 1.04 16 31 H 0.04 0.93 7.18 -2.39 -0.02 0.91 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.29 7.93 -2.39 -0.02 1.27 16 34 H 0.05 1.30 7.95 -2.38 -0.02 1.28 16 35 H 0.40 11.71 7.66 -92.71 -0.71 11.00 16 36 H 0.12 4.15 6.70 -2.91 -0.02 4.13 16 37 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.09 4.59 4.73 -2.91 -0.01 4.58 16 39 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 40 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -62.76 316.15 4.02 -58.74 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.23 Total: 24.55 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 3.66 Total: -55.91 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.55 Total: -74.34 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.68 Total: 46.95 kcal Total: -62.76 4.02 -58.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313476132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds