Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47199 * 2 1 4 4 C 1.53003 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46612 * 304.99582 * 4 3 2 6 6 C 1.53001 * 109.46906 * 184.99965 * 4 3 2 7 7 C 1.52996 * 109.46797 * 175.46657 * 6 4 3 8 8 N 1.46494 * 109.47216 * 64.99399 * 4 3 2 9 9 C 1.39681 * 120.00109 * 243.54653 * 8 4 3 10 10 C 1.39333 * 119.95262 * 353.44669 * 9 8 4 11 11 C 1.38481 * 120.42435 * 179.97438 * 10 9 8 12 12 C 1.37682 * 120.32270 * 359.97438 * 11 10 9 13 13 C 1.40749 * 119.89911 * 0.02562 * 12 11 10 14 14 C 1.41407 * 120.21362 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99685 * 27.59512 * 14 13 12 16 16 C 1.39935 * 120.00042 * 207.60543 * 14 13 12 17 17 N 1.30823 * 119.99801 * 12.69360 * 16 14 13 18 18 Si 1.86803 * 119.99803 * 192.69420 * 16 14 13 19 19 H 1.48490 * 109.46973 * 89.99853 * 18 16 14 20 20 H 1.48504 * 109.46720 * 209.99871 * 18 16 14 21 21 H 1.48506 * 109.46966 * 329.99813 * 18 16 14 22 22 C 1.38286 * 119.94867 * 173.17543 * 9 8 4 23 23 H 1.08996 * 109.47339 * 299.99864 * 1 2 3 24 24 H 1.09000 * 109.47067 * 60.00579 * 1 2 3 25 25 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99196 * 2 1 3 27 27 H 1.08998 * 109.46696 * 119.99805 * 2 1 3 28 28 H 1.09004 * 109.47481 * 59.99703 * 3 2 1 29 29 H 1.08998 * 109.47137 * 299.99535 * 3 2 1 30 30 H 1.09001 * 109.46985 * 295.46381 * 6 4 3 31 31 H 1.08996 * 109.47637 * 55.46294 * 6 4 3 32 32 H 1.09001 * 109.47540 * 65.14554 * 7 6 4 33 33 H 1.09005 * 109.47411 * 185.14368 * 7 6 4 34 34 H 1.08996 * 109.47483 * 305.14415 * 7 6 4 35 35 H 0.97008 * 119.99917 * 63.55207 * 8 4 3 36 36 H 1.08001 * 119.78280 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.83726 * 180.02562 * 11 10 9 38 38 H 1.08007 * 120.05111 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00141 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.16286 * 359.97167 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 6 4.0799 2.8795 0.1264 7 6 5.6056 2.8710 0.2407 8 7 4.0589 0.8584 -1.2508 9 6 4.7998 -0.3255 -1.2264 10 6 5.1902 -0.8770 -0.0079 11 6 5.9244 -2.0506 0.0277 12 6 6.2764 -2.6860 -1.1420 13 6 5.8892 -2.1409 -2.3805 14 6 6.2475 -2.7877 -3.5858 15 1 6.4032 -3.8563 -3.5996 16 6 6.4006 -2.0431 -4.7607 17 7 6.4592 -0.7374 -4.7046 18 14 6.5210 -2.9136 -6.4091 19 1 5.1614 -3.0758 -6.9837 20 1 7.3567 -2.1073 -7.3347 21 1 7.1409 -4.2497 -6.2192 22 6 5.1399 -0.9516 -2.4116 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9562 -0.8900 30 1 3.7848 3.4481 -0.7555 31 1 3.6514 3.3406 1.0162 32 1 6.0375 2.4943 -0.6865 33 1 5.9621 3.8851 0.4217 34 1 5.9044 2.2277 1.0683 35 1 3.8682 1.2939 -2.0963 36 1 4.9184 -0.3859 0.9148 37 1 6.2216 -2.4699 0.9775 38 1 6.8494 -3.6009 -1.1091 39 1 6.5657 -0.2212 -5.5190 40 1 4.8337 -0.5277 -3.3565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313484159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = -7.288904 kcal Electronic energy + Delta-G solvation = -18117.443159 eV Core-core repulsion = 15509.561652 eV Total energy + Delta-G solvation = -2607.881507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.37412 -36.49402 -33.74202 -33.23201 -31.90365 -29.37887 -28.71827 -26.65743 -25.17381 -23.79156 -21.49956 -20.83728 -20.36011 -19.43042 -17.24655 -15.85296 -15.35708 -14.70040 -14.58005 -14.38478 -14.12577 -13.66753 -13.13878 -12.78005 -12.60608 -12.18955 -12.15655 -11.97703 -11.65483 -11.53849 -11.25091 -11.03855 -10.98766 -10.79299 -10.74273 -10.49525 -10.38538 -10.25815 -10.05261 -9.55656 -9.35066 -9.17064 -8.68548 -7.21795 -6.64282 -6.06166 -4.27434 2.91411 3.12970 3.16690 3.28456 3.38321 4.02556 4.40303 4.79753 4.89815 5.27051 5.31233 5.41288 5.49805 5.60822 5.70752 5.86346 5.91445 5.98111 6.01338 6.11425 6.16233 6.23401 6.34735 6.36880 6.39483 6.50424 6.64518 6.68270 6.73533 6.94925 7.18233 7.20618 7.45793 7.51501 7.88969 8.01479 8.17667 8.24727 8.56755 8.80435 8.91761 9.07399 9.18393 10.34563 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.006123 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.773051 B = 4571.458889 C = 4723.004480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.128 4.128 4 C 0.150 3.850 5 H 0.088 0.912 6 C -0.132 4.132 7 C -0.145 4.145 8 N -0.749 5.749 9 C 0.221 3.779 10 C -0.296 4.296 11 C -0.069 4.069 12 C -0.257 4.257 13 C 0.138 3.862 14 C -0.466 4.466 15 H 0.074 0.926 16 C 0.076 3.924 17 N -0.800 5.800 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.226 4.226 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.387 0.613 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 5.721 5.880 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.167 4.167 4 C 0.043 3.957 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.203 4.203 8 N -0.381 5.381 9 C 0.122 3.878 10 C -0.319 4.319 11 C -0.087 4.087 12 C -0.277 4.277 13 C 0.135 3.865 14 C -0.496 4.496 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.426 5.426 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.250 4.250 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.221 0.779 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.824 5.937 5.920 10.811 hybrid contribution 0.073 -0.092 -1.114 1.120 sum -6.751 5.845 4.806 10.141 Atomic orbital electron populations 1.21774 0.96759 1.01165 1.00974 1.21441 0.94571 0.96832 1.02983 1.22033 0.96451 0.97080 1.01158 1.20898 0.91942 0.93112 0.89759 0.89368 1.21914 0.96726 0.97375 1.01080 1.21668 0.95559 1.00229 1.02822 1.44419 1.61275 1.26202 1.06229 1.17624 0.90684 0.85367 0.94113 1.19935 1.15302 1.02218 0.94435 1.20282 0.97356 0.94967 0.96136 1.20878 1.10544 1.03517 0.92793 1.17337 0.86768 0.90578 0.91793 1.19543 1.42116 0.95360 0.92619 0.90784 1.25837 0.92678 0.94689 1.00800 1.69842 1.36644 1.06319 1.29812 0.86368 0.78900 0.80332 0.81359 1.19526 1.20495 1.18775 1.20768 1.08233 1.01035 0.94981 0.93406 0.93188 0.93093 0.90974 0.92375 0.92264 0.92433 0.92421 0.92203 0.91825 0.93842 0.92982 0.77946 0.89504 0.89822 0.89546 0.91379 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.72 5.82 -26.73 -0.16 -1.88 16 3 C -0.13 -1.69 4.89 -26.73 -0.13 -1.82 16 4 C 0.15 2.25 2.28 -67.93 -0.16 2.09 16 5 H 0.09 1.44 5.30 -51.93 -0.28 1.16 16 6 C -0.13 -1.75 5.61 -26.73 -0.15 -1.90 16 7 C -0.15 -2.12 9.73 37.16 0.36 -1.76 16 8 N -0.75 -13.69 4.06 -52.22 -0.21 -13.91 16 9 C 0.22 4.98 6.63 -83.86 -0.56 4.43 16 10 C -0.30 -6.59 9.32 -39.08 -0.36 -6.95 16 11 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 12 C -0.26 -6.52 9.79 -38.84 -0.38 -6.90 16 13 C 0.14 3.77 5.55 -106.85 -0.59 3.18 16 14 C -0.47 -12.70 9.06 -37.74 -0.34 -13.04 16 15 H 0.07 1.96 7.88 -52.49 -0.41 1.54 16 16 C 0.08 1.96 5.22 -17.35 -0.09 1.87 16 17 N -0.80 -21.05 10.88 55.55 0.60 -20.45 16 18 Si 0.91 19.22 29.58 -169.99 -5.03 14.19 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.23 -5.86 8.50 -38.67 -0.33 -6.18 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.07 1.24 7.75 -51.93 -0.40 0.83 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.09 7.89 -51.93 -0.41 0.68 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 6.97 8.84 -40.82 -0.36 6.61 16 36 H 0.09 1.75 5.73 -52.49 -0.30 1.45 16 37 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.12 3.14 6.22 -52.49 -0.33 2.81 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -27.16 323.63 -9.37 -36.53 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.70 Total: 11.02 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -2.91 Total: -32.27 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.39 Total: -34.35 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.16 -9.37 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313484159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.245 kcal (2) G-P(sol) polarization free energy of solvation -27.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds