Wall clock time and date at job start Mon Mar 30 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47199 * 2 1 4 4 C 1.53003 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46612 * 304.99582 * 4 3 2 6 6 C 1.53001 * 109.46906 * 184.99965 * 4 3 2 7 7 C 1.52996 * 109.46797 * 175.46657 * 6 4 3 8 8 N 1.46494 * 109.47216 * 64.99399 * 4 3 2 9 9 C 1.39681 * 120.00109 * 243.54653 * 8 4 3 10 10 C 1.39333 * 119.95262 * 353.44669 * 9 8 4 11 11 C 1.38481 * 120.42435 * 179.97438 * 10 9 8 12 12 C 1.37682 * 120.32270 * 359.97438 * 11 10 9 13 13 C 1.40749 * 119.89911 * 0.02562 * 12 11 10 14 14 C 1.41407 * 120.21362 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99685 * 27.59512 * 14 13 12 16 16 C 1.39935 * 120.00042 * 207.60543 * 14 13 12 17 17 N 1.30823 * 119.99801 * 12.69360 * 16 14 13 18 18 Si 1.86803 * 119.99803 * 192.69420 * 16 14 13 19 19 H 1.48490 * 109.46973 * 89.99853 * 18 16 14 20 20 H 1.48504 * 109.46720 * 209.99871 * 18 16 14 21 21 H 1.48506 * 109.46966 * 329.99813 * 18 16 14 22 22 C 1.38286 * 119.94867 * 173.17543 * 9 8 4 23 23 H 1.08996 * 109.47339 * 299.99864 * 1 2 3 24 24 H 1.09000 * 109.47067 * 60.00579 * 1 2 3 25 25 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99196 * 2 1 3 27 27 H 1.08998 * 109.46696 * 119.99805 * 2 1 3 28 28 H 1.09004 * 109.47481 * 59.99703 * 3 2 1 29 29 H 1.08998 * 109.47137 * 299.99535 * 3 2 1 30 30 H 1.09001 * 109.46985 * 295.46381 * 6 4 3 31 31 H 1.08996 * 109.47637 * 55.46294 * 6 4 3 32 32 H 1.09001 * 109.47540 * 65.14554 * 7 6 4 33 33 H 1.09005 * 109.47411 * 185.14368 * 7 6 4 34 34 H 1.08996 * 109.47483 * 305.14415 * 7 6 4 35 35 H 0.97008 * 119.99917 * 63.55207 * 8 4 3 36 36 H 1.08001 * 119.78280 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.83726 * 180.02562 * 11 10 9 38 38 H 1.08007 * 120.05111 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00141 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.16286 * 359.97167 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 6 4.0799 2.8795 0.1264 7 6 5.6056 2.8710 0.2407 8 7 4.0589 0.8584 -1.2508 9 6 4.7998 -0.3255 -1.2264 10 6 5.1902 -0.8770 -0.0079 11 6 5.9244 -2.0506 0.0277 12 6 6.2764 -2.6860 -1.1420 13 6 5.8892 -2.1409 -2.3805 14 6 6.2475 -2.7877 -3.5858 15 1 6.4032 -3.8563 -3.5996 16 6 6.4006 -2.0431 -4.7607 17 7 6.4592 -0.7374 -4.7046 18 14 6.5210 -2.9136 -6.4091 19 1 5.1614 -3.0758 -6.9837 20 1 7.3567 -2.1073 -7.3347 21 1 7.1409 -4.2497 -6.2192 22 6 5.1399 -0.9516 -2.4116 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9562 -0.8900 30 1 3.7848 3.4481 -0.7555 31 1 3.6514 3.3406 1.0162 32 1 6.0375 2.4943 -0.6865 33 1 5.9621 3.8851 0.4217 34 1 5.9044 2.2277 1.0683 35 1 3.8682 1.2939 -2.0963 36 1 4.9184 -0.3859 0.9148 37 1 6.2216 -2.4699 0.9775 38 1 6.8494 -3.6009 -1.1091 39 1 6.5657 -0.2212 -5.5190 40 1 4.8337 -0.5277 -3.3565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313484159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:37 Heat of formation + Delta-G solvation = -19.953460 kcal Electronic energy + Delta-G solvation = -18117.992335 eV Core-core repulsion = 15509.561652 eV Total energy + Delta-G solvation = -2608.430683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97370 -38.06198 -35.48130 -34.56259 -33.39792 -31.31042 -30.04309 -28.19081 -27.12075 -24.93362 -23.20927 -22.13478 -21.87473 -20.99554 -19.08607 -17.62747 -16.83146 -16.41190 -16.23772 -15.64999 -15.32264 -15.09090 -14.65036 -14.38547 -14.06788 -13.91212 -13.49907 -13.23549 -13.14189 -12.97623 -12.78353 -12.66031 -12.56814 -12.17972 -12.07188 -11.90196 -11.63611 -11.50056 -11.49596 -11.43295 -11.10405 -11.01019 -10.36410 -9.17700 -8.56402 -7.79203 -6.31285 1.11300 1.37696 1.38341 1.50512 1.59398 2.24060 2.85557 2.93489 3.77151 3.88493 4.13939 4.21668 4.29676 4.42484 4.51402 4.54162 4.62601 4.80931 4.88244 4.93271 4.94054 5.01662 5.05735 5.10569 5.15943 5.22786 5.28392 5.32669 5.35484 5.39676 5.48300 5.53932 5.55342 5.67399 6.01519 6.15195 6.25729 6.33428 6.63895 6.99874 7.09792 7.15093 7.32370 8.43569 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.006123 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.773051 B = 4571.458889 C = 4723.004480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.145 3.855 5 H 0.079 0.921 6 C -0.125 4.125 7 C -0.144 4.144 8 N -0.741 5.741 9 C 0.233 3.767 10 C -0.296 4.296 11 C -0.066 4.066 12 C -0.286 4.286 13 C 0.107 3.893 14 C -0.506 4.506 15 H 0.068 0.932 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.254 4.254 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.388 0.612 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.282 0.718 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 7.162 6.966 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.159 4.159 4 C 0.040 3.960 5 H 0.097 0.903 6 C -0.163 4.163 7 C -0.202 4.202 8 N -0.372 5.372 9 C 0.132 3.868 10 C -0.318 4.318 11 C -0.085 4.085 12 C -0.307 4.307 13 C 0.104 3.896 14 C -0.536 4.536 15 H 0.086 0.914 16 C -0.178 4.178 17 N -0.456 5.456 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.279 4.279 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.221 0.779 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.051 7.413 7.035 13.010 hybrid contribution 0.406 -0.449 -1.311 1.444 sum -7.645 6.964 5.724 11.820 Atomic orbital electron populations 1.21729 0.94810 1.01526 1.02128 1.21408 0.96353 0.97245 1.00841 1.21970 0.94558 0.96516 1.02808 1.21154 0.93402 0.93954 0.87478 0.90267 1.21873 0.95631 0.95989 1.02847 1.21648 0.96598 1.01188 1.00722 1.44529 1.60046 1.24722 1.07855 1.17662 0.89770 0.86116 0.93295 1.20261 1.14392 1.01926 0.95259 1.20640 0.96346 0.94825 0.96649 1.21013 1.12083 1.04316 0.93307 1.17727 0.87544 0.91603 0.92728 1.19779 1.44354 0.95379 0.94102 0.91402 1.26661 0.91718 0.95346 1.04124 1.69912 1.36925 1.07614 1.31101 0.85253 0.79167 0.79097 0.76418 1.18841 1.19278 1.18492 1.20673 1.09988 1.01757 0.95442 0.91361 0.92849 0.93256 0.94688 0.92956 0.89268 0.91953 0.91820 0.89065 0.95275 0.91769 0.93479 0.77892 0.86780 0.86691 0.89593 0.90728 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.91 71.98 0.71 -2.43 16 2 C -0.12 -3.26 5.82 30.59 0.18 -3.08 16 3 C -0.12 -2.80 4.89 30.59 0.15 -2.65 16 4 C 0.15 4.04 2.28 44.99 0.10 4.14 16 5 H 0.08 2.37 5.30 -2.39 -0.01 2.36 16 6 C -0.12 -2.91 5.61 30.59 0.17 -2.74 16 7 C -0.14 -3.91 9.73 71.98 0.70 -3.21 16 8 N -0.74 -26.85 4.06 -319.12 -1.30 -28.14 16 9 C 0.23 10.66 6.63 38.17 0.25 10.92 16 10 C -0.30 -12.96 9.32 22.59 0.21 -12.75 16 11 C -0.07 -3.03 10.02 22.20 0.22 -2.80 16 12 C -0.29 -15.03 9.79 22.75 0.22 -14.81 16 13 C 0.11 6.10 5.55 -21.31 -0.12 5.98 16 14 C -0.51 -28.92 9.06 23.46 0.21 -28.71 16 15 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 16 C 0.03 1.85 5.22 85.25 0.45 2.30 16 17 N -0.83 -45.13 10.88 21.82 0.24 -44.89 16 18 Si 0.98 40.28 29.58 68.60 2.03 42.31 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 C -0.25 -13.74 8.50 22.86 0.19 -13.55 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.03 1.19 7.75 -2.39 -0.02 1.17 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 0.97 7.89 -2.39 -0.02 0.95 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.39 14.02 8.84 -92.70 -0.82 13.20 16 36 H 0.11 4.35 5.73 -2.91 -0.02 4.33 16 37 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.10 5.52 6.22 -2.91 -0.02 5.50 16 Total: -1.00 -61.43 323.63 4.81 -56.62 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.18 Total: 37.49 kcal Atomic # 6 Polarization: -67.05 SS G_CDS: 3.66 Total: -63.39 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.06 Total: -73.03 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -61.43 4.81 -56.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313484159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -61.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds