Wall clock time and date at job start Mon Mar 30 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53005 * 109.46724 * 119.99656 * 2 1 3 5 5 H 1.09004 * 109.47384 * 299.99938 * 4 2 1 6 6 C 1.52993 * 109.47192 * 60.00204 * 4 2 1 7 7 N 1.46504 * 109.47168 * 180.02562 * 4 2 1 8 8 C 1.46502 * 119.99759 * 304.73735 * 7 4 2 9 9 C 1.50692 * 109.47401 * 270.00253 * 8 7 4 10 10 H 1.08000 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00246 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99700 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00198 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47066 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46985 * 119.99851 * 13 11 9 16 16 H 1.48498 * 109.47163 * 240.00197 * 13 11 9 17 17 C 1.39670 * 120.00181 * 124.73928 * 7 4 2 18 18 C 1.38904 * 120.07396 * 354.27262 * 17 7 4 19 19 C 1.38110 * 119.92498 * 179.72761 * 18 17 7 20 20 C 1.38282 * 120.07433 * 0.26914 * 19 18 17 21 21 C 1.38294 * 120.14773 * 359.97438 * 20 19 18 22 22 C 1.38095 * 120.07613 * 0.02562 * 21 20 19 23 23 H 1.08992 * 109.47568 * 300.00305 * 1 2 3 24 24 H 1.09004 * 109.46824 * 60.00440 * 1 2 3 25 25 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47608 * 239.99137 * 2 1 3 27 27 H 1.08999 * 109.47639 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46770 * 299.99593 * 3 2 1 29 29 H 1.09002 * 109.46964 * 59.99269 * 3 2 1 30 30 H 1.08996 * 109.47609 * 179.97438 * 6 4 2 31 31 H 1.08999 * 109.47352 * 299.99963 * 6 4 2 32 32 H 1.09004 * 109.47650 * 59.99838 * 6 4 2 33 33 H 1.09008 * 109.47223 * 30.00035 * 8 7 4 34 34 H 1.09002 * 109.47051 * 149.99985 * 8 7 4 35 35 H 0.96996 * 120.00040 * 180.02562 * 12 11 9 36 36 H 1.08004 * 120.04066 * 359.97438 * 18 17 7 37 37 H 1.07997 * 119.96206 * 180.29898 * 19 18 17 38 38 H 1.07996 * 119.92490 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.95794 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.03731 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1393 6 6 1.5299 -2.1636 1.2494 7 7 3.5049 -0.7207 1.2498 8 6 4.2379 -1.2619 0.1025 9 6 4.4894 -2.7323 0.3152 10 1 4.1381 -3.2157 1.2149 11 6 5.1681 -3.4608 -0.6386 12 7 5.5955 -2.8724 -1.7344 13 14 5.4806 -5.2835 -0.3746 14 1 4.9033 -5.7009 0.9284 15 1 4.8440 -6.0585 -1.4697 16 1 6.9433 -5.5397 -0.3721 17 6 4.2028 -0.2044 2.3439 18 6 3.5146 0.4162 3.3786 19 6 4.2073 0.9206 4.4617 20 6 5.5850 0.8133 4.5142 21 6 6.2737 0.2005 3.4834 22 6 5.5872 -0.3060 2.3974 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.8935 -2.6776 2.1391 31 1 0.4399 -2.1637 1.2493 32 1 1.8932 -2.6776 0.3595 33 1 3.6489 -1.1215 -0.8040 34 1 5.1902 -0.7412 0.0014 35 1 6.0727 -3.3849 -2.4056 36 1 2.4386 0.5007 3.3381 37 1 3.6724 1.3990 5.2688 38 1 6.1242 1.2083 5.3625 39 1 7.3496 0.1180 3.5277 40 1 6.1257 -0.7849 1.5929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319685330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:02 Heat of formation + Delta-G solvation = 17.913966 kcal Electronic energy + Delta-G solvation = -18707.401474 eV Core-core repulsion = 16100.612846 eV Total energy + Delta-G solvation = -2606.788628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.15354 -37.08178 -33.99756 -32.49885 -30.37229 -29.81175 -28.61480 -27.04891 -25.99018 -23.29205 -22.74989 -21.39352 -20.35290 -18.63847 -17.05038 -16.44704 -15.25884 -14.93554 -14.29668 -14.19825 -14.00042 -13.61608 -13.27547 -12.83575 -12.62661 -12.33420 -12.01857 -11.96300 -11.91126 -11.61020 -11.26655 -11.11951 -10.93489 -10.81365 -10.68550 -10.48101 -10.44410 -10.24535 -9.98085 -9.68379 -9.49124 -8.83788 -8.47582 -8.23608 -6.43172 -5.98574 -4.12841 2.13835 2.36497 3.25573 3.34269 3.38839 4.10034 4.41806 4.62746 5.12776 5.24174 5.31790 5.42449 5.55410 5.57432 5.73859 5.83321 5.91867 5.98128 6.01981 6.11739 6.15101 6.22509 6.29582 6.32892 6.38066 6.48661 6.58154 6.67641 6.72201 6.75642 7.00038 7.08901 7.16079 7.23482 7.32033 7.41380 7.66864 7.85051 8.20801 8.35178 8.57321 8.96779 9.53016 10.98255 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.009685 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.691321 B = 2890.359150 C = 4092.682175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.156 3.844 5 H 0.074 0.926 6 C -0.160 4.160 7 N -0.603 5.603 8 C 0.250 3.750 9 C -0.522 4.522 10 H 0.061 0.939 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.242 3.758 18 C -0.223 4.223 19 C -0.079 4.079 20 C -0.207 4.207 21 C -0.077 4.077 22 C -0.188 4.188 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 6.483 6.108 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.196 4.196 4 C 0.052 3.948 5 H 0.092 0.908 6 C -0.219 4.219 7 N -0.308 5.308 8 C 0.130 3.870 9 C -0.561 4.561 10 H 0.079 0.921 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.135 3.865 18 C -0.246 4.246 19 C -0.098 4.098 20 C -0.228 4.228 21 C -0.096 4.096 22 C -0.210 4.210 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.374 6.349 5.730 10.666 hybrid contribution 0.295 -1.157 0.036 1.195 sum -6.079 5.191 5.766 9.857 Atomic orbital electron populations 1.21848 0.95491 1.01677 1.01067 1.21498 0.94966 0.96557 0.99869 1.21725 1.01921 0.95582 1.00339 1.20879 0.81211 0.95699 0.97047 0.90813 1.22240 0.98872 0.96956 1.03786 1.47175 1.03592 1.62455 1.17554 1.19222 0.91665 0.93241 0.82824 1.21646 1.35588 0.94258 1.04656 0.92096 1.24952 0.95647 0.98425 0.95130 1.69937 1.38611 1.36147 1.08766 0.86545 0.77990 0.85416 0.78143 1.19770 1.21076 1.20999 1.17921 0.91404 0.89984 0.87157 1.20597 0.99051 1.08285 0.96688 1.20659 0.94146 0.98244 0.96702 1.20637 0.94290 1.07575 1.00273 1.20821 0.98808 0.96526 0.93477 1.20928 0.92953 1.06344 1.00824 0.93190 0.93057 0.92343 0.90124 0.92130 0.93552 0.93519 0.93062 0.93293 0.90411 0.94866 0.95106 0.92845 0.86981 0.87576 0.87797 0.87252 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.84 37.16 0.33 -1.51 16 2 C -0.11 -1.74 2.25 -90.62 -0.20 -1.95 16 3 C -0.14 -2.12 9.04 37.16 0.34 -1.78 16 4 C 0.16 2.72 2.17 -67.93 -0.15 2.57 16 5 H 0.07 1.20 5.31 -51.93 -0.28 0.92 16 6 C -0.16 -2.82 8.25 37.15 0.31 -2.52 16 7 N -0.60 -12.33 1.75 -165.54 -0.29 -12.62 16 8 C 0.25 6.03 4.36 -5.20 -0.02 6.01 16 9 C -0.52 -13.74 7.80 -34.44 -0.27 -14.01 16 10 H 0.06 1.65 7.59 -52.49 -0.40 1.25 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.24 4.86 6.54 -83.79 -0.55 4.32 16 18 C -0.22 -3.94 9.31 -39.38 -0.37 -4.31 16 19 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 20 C -0.21 -3.37 10.04 -39.54 -0.40 -3.77 16 21 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 22 C -0.19 -3.85 9.16 -39.38 -0.36 -4.21 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 26 H 0.08 1.48 6.53 -51.93 -0.34 1.14 16 27 H 0.06 1.06 7.60 -51.93 -0.39 0.67 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 32 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 33 H 0.03 0.85 6.19 -51.92 -0.32 0.52 16 34 H 0.03 0.81 6.44 -51.93 -0.33 0.47 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 36 H 0.11 1.81 5.74 -52.48 -0.30 1.50 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.13 2.98 6.26 -52.48 -0.33 2.65 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -27.34 313.83 -8.32 -35.66 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.24 Total: 3.71 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.24 Total: -23.07 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.45 Total: -37.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.34 -8.32 -35.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319685330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.571 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds