Wall clock time and date at job start Mon Mar 30 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53005 * 109.46724 * 119.99656 * 2 1 3 5 5 H 1.09004 * 109.47384 * 299.99938 * 4 2 1 6 6 C 1.52993 * 109.47192 * 60.00204 * 4 2 1 7 7 N 1.46504 * 109.47168 * 180.02562 * 4 2 1 8 8 C 1.46502 * 119.99759 * 304.73735 * 7 4 2 9 9 C 1.50692 * 109.47401 * 270.00253 * 8 7 4 10 10 H 1.08000 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00246 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99700 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00198 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47066 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46985 * 119.99851 * 13 11 9 16 16 H 1.48498 * 109.47163 * 240.00197 * 13 11 9 17 17 C 1.39670 * 120.00181 * 124.73928 * 7 4 2 18 18 C 1.38904 * 120.07396 * 354.27262 * 17 7 4 19 19 C 1.38110 * 119.92498 * 179.72761 * 18 17 7 20 20 C 1.38282 * 120.07433 * 0.26914 * 19 18 17 21 21 C 1.38294 * 120.14773 * 359.97438 * 20 19 18 22 22 C 1.38095 * 120.07613 * 0.02562 * 21 20 19 23 23 H 1.08992 * 109.47568 * 300.00305 * 1 2 3 24 24 H 1.09004 * 109.46824 * 60.00440 * 1 2 3 25 25 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47608 * 239.99137 * 2 1 3 27 27 H 1.08999 * 109.47639 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46770 * 299.99593 * 3 2 1 29 29 H 1.09002 * 109.46964 * 59.99269 * 3 2 1 30 30 H 1.08996 * 109.47609 * 179.97438 * 6 4 2 31 31 H 1.08999 * 109.47352 * 299.99963 * 6 4 2 32 32 H 1.09004 * 109.47650 * 59.99838 * 6 4 2 33 33 H 1.09008 * 109.47223 * 30.00035 * 8 7 4 34 34 H 1.09002 * 109.47051 * 149.99985 * 8 7 4 35 35 H 0.96996 * 120.00040 * 180.02562 * 12 11 9 36 36 H 1.08004 * 120.04066 * 359.97438 * 18 17 7 37 37 H 1.07997 * 119.96206 * 180.29898 * 19 18 17 38 38 H 1.07996 * 119.92490 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.95794 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.03731 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1393 6 6 1.5299 -2.1636 1.2494 7 7 3.5049 -0.7207 1.2498 8 6 4.2379 -1.2619 0.1025 9 6 4.4894 -2.7323 0.3152 10 1 4.1381 -3.2157 1.2149 11 6 5.1681 -3.4608 -0.6386 12 7 5.5955 -2.8724 -1.7344 13 14 5.4806 -5.2835 -0.3746 14 1 4.9033 -5.7009 0.9284 15 1 4.8440 -6.0585 -1.4697 16 1 6.9433 -5.5397 -0.3721 17 6 4.2028 -0.2044 2.3439 18 6 3.5146 0.4162 3.3786 19 6 4.2073 0.9206 4.4617 20 6 5.5850 0.8133 4.5142 21 6 6.2737 0.2005 3.4834 22 6 5.5872 -0.3060 2.3974 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.8935 -2.6776 2.1391 31 1 0.4399 -2.1637 1.2493 32 1 1.8932 -2.6776 0.3595 33 1 3.6489 -1.1215 -0.8040 34 1 5.1902 -0.7412 0.0014 35 1 6.0727 -3.3849 -2.4056 36 1 2.4386 0.5007 3.3381 37 1 3.6724 1.3990 5.2688 38 1 6.1242 1.2083 5.3625 39 1 7.3496 0.1180 3.5277 40 1 6.1257 -0.7849 1.5929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319685330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:02 Heat of formation + Delta-G solvation = 5.616223 kcal Electronic energy + Delta-G solvation = -18707.934744 eV Core-core repulsion = 16100.612846 eV Total energy + Delta-G solvation = -2607.321898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61602 -38.45699 -35.61756 -34.36188 -31.80688 -31.21368 -30.27263 -28.52709 -27.41261 -25.06054 -24.22135 -22.83180 -21.76763 -20.08419 -18.54150 -18.49989 -16.85233 -16.54045 -15.89344 -15.64021 -15.38546 -14.96222 -14.70526 -14.40826 -14.28272 -13.76649 -13.62649 -13.34831 -13.13603 -13.05876 -12.85077 -12.84110 -12.57008 -12.48150 -12.12374 -12.01717 -11.91986 -11.77074 -11.45383 -11.37507 -11.05106 -10.59133 -10.41768 -9.64385 -8.32221 -7.75289 -6.29582 0.72824 0.95971 1.33926 1.36469 1.47599 2.35060 2.62466 3.10627 3.20756 3.79385 4.06189 4.13484 4.28645 4.30460 4.41646 4.58726 4.64219 4.68634 4.78562 4.80840 4.84906 4.92557 4.97099 5.03707 5.07381 5.12224 5.18261 5.28030 5.29302 5.39055 5.43784 5.53276 5.59061 5.67702 5.75415 5.80931 5.92094 6.15369 6.27586 6.59570 6.91843 7.04622 7.40708 8.87724 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.009685 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.691321 B = 2890.359150 C = 4092.682175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.131 4.131 4 C 0.153 3.847 5 H 0.097 0.903 6 C -0.153 4.153 7 N -0.611 5.611 8 C 0.275 3.725 9 C -0.521 4.521 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.928 5.928 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.281 1.281 17 C 0.216 3.784 18 C -0.221 4.221 19 C -0.072 4.072 20 C -0.200 4.200 21 C -0.082 4.082 22 C -0.222 4.222 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.013 0.987 34 H -0.001 1.001 35 H 0.264 0.736 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 7.334 8.576 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.189 4.189 4 C 0.050 3.950 5 H 0.114 0.886 6 C -0.211 4.211 7 N -0.317 5.317 8 C 0.153 3.847 9 C -0.560 4.560 10 H 0.068 0.932 11 C -0.188 4.188 12 N -0.569 5.569 13 Si 0.779 3.221 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.207 1.207 17 C 0.111 3.889 18 C -0.244 4.244 19 C -0.091 4.091 20 C -0.220 4.220 21 C -0.101 4.101 22 C -0.245 4.245 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.039 7.212 8.224 13.575 hybrid contribution 0.842 -1.336 -0.642 1.705 sum -7.197 5.876 7.583 11.992 Atomic orbital electron populations 1.21795 0.92443 1.02383 1.02714 1.21446 0.97393 0.96251 0.97555 1.21653 0.99760 0.95522 1.01926 1.21117 0.79380 0.95905 0.98640 0.88574 1.22163 1.00990 0.96648 1.01281 1.47006 1.04694 1.63158 1.16825 1.18612 0.90262 0.91994 0.83826 1.21792 1.34965 0.95357 1.03923 0.93220 1.25706 0.95609 1.02505 0.94960 1.70045 1.39546 1.37687 1.09595 0.85582 0.77827 0.80614 0.78120 1.19561 1.20268 1.20674 1.18207 0.91465 0.91247 0.87959 1.20848 1.00052 1.07401 0.96103 1.21143 0.94278 0.96820 0.96816 1.21057 0.94788 1.05901 1.00252 1.21062 0.99822 0.96160 0.93037 1.20831 0.93680 1.08618 1.01361 0.91057 0.91897 0.92111 0.93695 0.95415 0.92160 0.91627 0.94411 0.89783 0.93892 0.96890 0.98338 0.92726 0.85073 0.83553 0.84374 0.85706 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.84 71.98 0.64 -2.52 16 2 C -0.11 -3.38 2.25 -10.79 -0.02 -3.40 16 3 C -0.13 -3.94 9.04 71.98 0.65 -3.29 16 4 C 0.15 5.28 2.17 44.99 0.10 5.37 16 5 H 0.10 2.88 5.31 -2.39 -0.01 2.87 16 6 C -0.15 -5.36 8.25 71.98 0.59 -4.77 16 7 N -0.61 -25.95 1.75 -677.65 -1.19 -27.13 16 8 C 0.27 14.23 4.36 85.63 0.37 14.60 16 9 C -0.52 -28.92 7.80 25.60 0.20 -28.72 16 10 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 13 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 C 0.22 8.82 6.54 38.21 0.25 9.07 16 18 C -0.22 -7.31 9.31 22.40 0.21 -7.10 16 19 C -0.07 -2.04 10.04 22.25 0.22 -1.81 16 20 C -0.20 -5.84 10.04 22.29 0.22 -5.62 16 21 C -0.08 -2.87 10.04 22.25 0.22 -2.64 16 22 C -0.22 -9.50 9.16 22.40 0.21 -9.29 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.06 1.38 6.43 -2.39 -0.02 1.37 16 26 H 0.04 1.73 6.53 -2.39 -0.02 1.72 16 27 H 0.03 0.99 7.60 -2.39 -0.02 0.97 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 2.30 6.43 -2.39 -0.02 2.28 16 32 H 0.04 1.79 6.93 -2.38 -0.02 1.77 16 33 H 0.01 0.73 6.19 -2.38 -0.01 0.71 16 34 H 0.00 -0.08 6.44 -2.39 -0.02 -0.09 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.13 3.75 5.74 -2.91 -0.02 3.74 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.09 4.61 6.26 -2.91 -0.02 4.59 16 Total: -1.00 -62.58 313.83 6.45 -56.13 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 4.32 Total: -39.05 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -0.90 Total: -81.72 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.58 6.45 -56.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319685330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.745 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds