Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 C 1.52993 * 109.47288 * 120.00326 * 2 1 3 5 5 H 1.09002 * 109.47744 * 174.29092 * 4 2 1 6 6 C 1.53004 * 109.47484 * 54.29046 * 4 2 1 7 7 N 1.46501 * 109.47387 * 294.29158 * 4 2 1 8 8 C 1.46501 * 119.99798 * 66.79672 * 7 4 2 9 9 C 1.50698 * 109.47067 * 261.55626 * 8 7 4 10 10 H 1.07998 * 120.00280 * 4.29852 * 9 8 7 11 11 C 1.37882 * 119.99926 * 184.30236 * 9 8 7 12 12 N 1.31513 * 119.99716 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47453 * 119.99438 * 13 11 9 16 16 H 1.48496 * 109.47212 * 239.99904 * 13 11 9 17 17 C 1.39670 * 120.00208 * 246.80291 * 7 4 2 18 18 C 1.38913 * 120.07693 * 174.76822 * 17 7 4 19 19 C 1.38104 * 119.92452 * 180.02562 * 18 17 7 20 20 C 1.38286 * 120.07542 * 359.97438 * 19 18 17 21 21 C 1.38279 * 120.14961 * 0.27700 * 20 19 18 22 22 C 1.38102 * 120.07611 * 359.45118 * 21 20 19 23 23 H 1.08998 * 109.47687 * 65.89424 * 1 2 3 24 24 H 1.08997 * 109.47156 * 185.89119 * 1 2 3 25 25 H 1.08996 * 109.47228 * 305.89027 * 1 2 3 26 26 H 1.09008 * 109.47216 * 240.00195 * 2 1 3 27 27 H 1.08995 * 109.47223 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47115 * 300.00162 * 3 2 1 29 29 H 1.09000 * 109.47000 * 60.00213 * 3 2 1 30 30 H 1.09002 * 109.47162 * 300.00519 * 6 4 2 31 31 H 1.09007 * 109.46607 * 59.99674 * 6 4 2 32 32 H 1.08998 * 109.47347 * 179.97438 * 6 4 2 33 33 H 1.08999 * 109.47118 * 21.55530 * 8 7 4 34 34 H 1.09007 * 109.46913 * 141.55834 * 8 7 4 35 35 H 0.97005 * 119.99880 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.03623 * 359.97438 * 18 17 7 37 37 H 1.07998 * 119.95966 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.92247 * 180.02562 * 20 19 18 39 39 H 1.08010 * 119.96009 * 179.70108 * 21 20 19 40 40 H 1.08005 * 120.03952 * 180.27756 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 3.1252 -0.8107 1.1996 6 6 1.4162 -2.1165 1.3230 7 7 1.6671 0.0440 2.4414 8 6 0.2568 0.1762 2.8155 9 6 -0.2693 1.5025 2.3303 10 1 0.3605 2.1489 1.7371 11 6 -1.5547 1.8906 2.6439 12 7 -2.3216 1.1032 3.3659 13 14 -2.2071 3.5342 2.0420 14 1 -1.1550 4.2261 1.2549 15 1 -3.3994 3.3100 1.1857 16 1 -2.5852 4.3734 3.2073 17 6 2.6560 0.6475 3.2215 18 6 2.3001 1.4626 4.2885 19 6 3.2806 2.0583 5.0574 20 6 4.6153 1.8436 4.7665 21 6 4.9731 1.0369 3.7018 22 6 3.9978 0.4337 2.9323 23 1 -0.3634 0.4197 -0.9380 24 1 -0.3633 -1.0222 0.1055 25 1 -0.3633 0.6024 0.8325 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.3310 -2.0271 1.3726 31 1 1.6937 -2.6858 0.4358 32 1 1.7799 -2.6305 2.2127 33 1 -0.3171 -0.6308 2.3601 34 1 0.1620 0.1225 3.9001 35 1 -3.2258 1.3765 3.5868 36 1 1.2579 1.6310 4.5160 37 1 3.0045 2.6918 5.8874 38 1 5.3800 2.3103 5.3696 39 1 6.0165 0.8753 3.4743 40 1 4.2779 -0.1998 2.1036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319685331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 36.631600 kcal Electronic energy + Delta-G solvation = -19173.083052 eV Core-core repulsion = 16567.106081 eV Total energy + Delta-G solvation = -2605.976971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.30134 -37.17332 -33.41444 -32.75394 -30.37577 -29.86507 -28.78842 -26.97244 -25.51508 -23.48580 -22.42583 -21.54433 -20.31031 -18.35797 -17.04238 -16.63122 -15.03522 -14.84832 -14.47408 -14.20750 -13.69370 -13.50527 -13.00198 -12.89850 -12.63497 -12.48279 -12.08260 -11.80366 -11.72785 -11.22261 -11.10335 -11.00974 -10.89376 -10.73041 -10.65323 -10.35757 -10.27650 -9.94342 -9.73313 -9.51630 -9.01334 -8.79731 -8.51604 -8.20330 -6.45758 -6.04332 -4.16306 2.16899 2.39041 3.21944 3.31451 3.35678 4.10988 4.35782 4.65910 5.10484 5.30842 5.47940 5.58890 5.62791 5.75187 5.84648 5.93266 6.04984 6.15287 6.19233 6.24136 6.40372 6.44663 6.49211 6.50463 6.56229 6.72756 6.77773 6.87205 6.93076 7.05083 7.09903 7.18995 7.27099 7.34896 7.42820 7.69543 7.76929 7.91003 8.23476 8.36002 8.57258 8.90427 9.41154 10.86926 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.010121 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.072100 B = 2765.973213 C = 3563.845550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.091 4.091 3 C -0.149 4.149 4 C 0.151 3.849 5 H 0.074 0.926 6 C -0.165 4.165 7 N -0.602 5.602 8 C 0.245 3.755 9 C -0.523 4.523 10 H 0.076 0.924 11 C 0.062 3.938 12 N -0.885 5.885 13 Si 0.888 3.112 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.242 3.758 18 C -0.183 4.183 19 C -0.079 4.079 20 C -0.206 4.206 21 C -0.080 4.080 22 C -0.223 4.223 23 H 0.025 0.975 24 H 0.037 0.963 25 H 0.158 0.842 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 -2.032 -2.039 9.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.111 4.111 3 C -0.206 4.206 4 C 0.047 3.953 5 H 0.092 0.908 6 C -0.222 4.222 7 N -0.308 5.308 8 C 0.125 3.875 9 C -0.561 4.561 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.136 3.864 18 C -0.206 4.206 19 C -0.098 4.098 20 C -0.227 4.227 21 C -0.099 4.099 22 C -0.246 4.246 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.175 0.825 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.187 -2.169 -2.093 8.724 hybrid contribution -0.444 0.843 -0.526 1.088 sum 7.743 -1.326 -2.619 8.281 Atomic orbital electron populations 1.23305 0.94166 1.03310 1.06376 1.21281 0.97985 0.95991 0.95795 1.21945 0.98914 0.96883 1.02834 1.20939 0.98265 0.90408 0.85737 0.90840 1.22245 1.02980 0.96297 1.00727 1.47129 1.06117 1.52827 1.24711 1.19403 0.75242 0.96766 0.96093 1.21613 0.98152 1.03762 1.32544 0.90643 1.24993 0.97027 0.97075 0.95014 1.69942 1.08685 1.36581 1.37080 0.86573 0.79093 0.84010 0.78767 1.19464 1.20923 1.20853 1.17892 0.88138 0.90318 0.90049 1.20970 1.00605 1.01333 0.97690 1.20829 0.92738 0.98041 0.98236 1.20633 0.95754 1.05223 1.01079 1.20646 0.97730 0.96529 0.95014 1.20602 0.91708 1.07878 1.04368 0.95591 0.94380 0.82536 0.93320 0.94540 0.94206 0.89701 0.90913 0.92775 0.93052 0.94212 0.95292 0.92591 0.84699 0.87309 0.87876 0.87653 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.29 7.68 37.15 0.29 -4.01 16 2 C -0.09 -1.62 2.80 -90.63 -0.25 -1.87 16 3 C -0.15 -2.73 8.84 37.16 0.33 -2.40 16 4 C 0.15 2.65 2.60 -67.93 -0.18 2.48 16 5 H 0.07 1.20 5.32 -51.93 -0.28 0.92 16 6 C -0.16 -2.67 8.56 37.16 0.32 -2.35 16 7 N -0.60 -12.07 1.62 -165.54 -0.27 -12.34 16 8 C 0.24 5.66 3.77 -5.19 -0.02 5.64 16 9 C -0.52 -12.83 4.90 -34.44 -0.17 -12.99 16 10 H 0.08 1.89 4.84 -52.49 -0.25 1.64 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.89 -23.86 13.29 55.43 0.74 -23.13 16 13 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 C 0.24 4.81 6.33 -83.79 -0.53 4.28 16 18 C -0.18 -3.72 8.98 -39.38 -0.35 -4.07 16 19 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 20 C -0.21 -3.36 10.04 -39.55 -0.40 -3.76 16 21 C -0.08 -1.30 10.04 -39.62 -0.40 -1.70 16 22 C -0.22 -3.92 9.32 -39.38 -0.37 -4.29 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.72 5.96 -51.93 -0.31 0.42 16 25 H 0.16 3.58 2.35 -59.95 -0.14 3.44 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.80 4.26 -51.93 -0.22 1.57 16 30 H 0.07 1.30 4.63 -51.93 -0.24 1.06 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.96 5.10 -51.93 -0.26 0.70 16 34 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.14 3.02 6.08 -52.49 -0.32 2.70 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.11 1.80 5.74 -52.48 -0.30 1.50 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -25.37 297.69 -7.92 -33.29 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.63 Total: 7.73 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.23 Total: -25.36 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.47 Total: -35.46 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.37 -7.92 -33.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319685331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.926 kcal (2) G-P(sol) polarization free energy of solvation -25.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds