Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 C 1.52993 * 109.47288 * 120.00326 * 2 1 3 5 5 H 1.09002 * 109.47744 * 174.29092 * 4 2 1 6 6 C 1.53004 * 109.47484 * 54.29046 * 4 2 1 7 7 N 1.46501 * 109.47387 * 294.29158 * 4 2 1 8 8 C 1.46501 * 119.99798 * 66.79672 * 7 4 2 9 9 C 1.50698 * 109.47067 * 261.55626 * 8 7 4 10 10 H 1.07998 * 120.00280 * 4.29852 * 9 8 7 11 11 C 1.37882 * 119.99926 * 184.30236 * 9 8 7 12 12 N 1.31513 * 119.99716 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47453 * 119.99438 * 13 11 9 16 16 H 1.48496 * 109.47212 * 239.99904 * 13 11 9 17 17 C 1.39670 * 120.00208 * 246.80291 * 7 4 2 18 18 C 1.38913 * 120.07693 * 174.76822 * 17 7 4 19 19 C 1.38104 * 119.92452 * 180.02562 * 18 17 7 20 20 C 1.38286 * 120.07542 * 359.97438 * 19 18 17 21 21 C 1.38279 * 120.14961 * 0.27700 * 20 19 18 22 22 C 1.38102 * 120.07611 * 359.45118 * 21 20 19 23 23 H 1.08998 * 109.47687 * 65.89424 * 1 2 3 24 24 H 1.08997 * 109.47156 * 185.89119 * 1 2 3 25 25 H 1.08996 * 109.47228 * 305.89027 * 1 2 3 26 26 H 1.09008 * 109.47216 * 240.00195 * 2 1 3 27 27 H 1.08995 * 109.47223 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47115 * 300.00162 * 3 2 1 29 29 H 1.09000 * 109.47000 * 60.00213 * 3 2 1 30 30 H 1.09002 * 109.47162 * 300.00519 * 6 4 2 31 31 H 1.09007 * 109.46607 * 59.99674 * 6 4 2 32 32 H 1.08998 * 109.47347 * 179.97438 * 6 4 2 33 33 H 1.08999 * 109.47118 * 21.55530 * 8 7 4 34 34 H 1.09007 * 109.46913 * 141.55834 * 8 7 4 35 35 H 0.97005 * 119.99880 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.03623 * 359.97438 * 18 17 7 37 37 H 1.07998 * 119.95966 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.92247 * 180.02562 * 20 19 18 39 39 H 1.08010 * 119.96009 * 179.70108 * 21 20 19 40 40 H 1.08005 * 120.03952 * 180.27756 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 3.1252 -0.8107 1.1996 6 6 1.4162 -2.1165 1.3230 7 7 1.6671 0.0440 2.4414 8 6 0.2568 0.1762 2.8155 9 6 -0.2693 1.5025 2.3303 10 1 0.3605 2.1489 1.7371 11 6 -1.5547 1.8906 2.6439 12 7 -2.3216 1.1032 3.3659 13 14 -2.2071 3.5342 2.0420 14 1 -1.1550 4.2261 1.2549 15 1 -3.3994 3.3100 1.1857 16 1 -2.5852 4.3734 3.2073 17 6 2.6560 0.6475 3.2215 18 6 2.3001 1.4626 4.2885 19 6 3.2806 2.0583 5.0574 20 6 4.6153 1.8436 4.7665 21 6 4.9731 1.0369 3.7018 22 6 3.9978 0.4337 2.9323 23 1 -0.3634 0.4197 -0.9380 24 1 -0.3633 -1.0222 0.1055 25 1 -0.3633 0.6024 0.8325 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.3310 -2.0271 1.3726 31 1 1.6937 -2.6858 0.4358 32 1 1.7799 -2.6305 2.2127 33 1 -0.3171 -0.6308 2.3601 34 1 0.1620 0.1225 3.9001 35 1 -3.2258 1.3765 3.5868 36 1 1.2579 1.6310 4.5160 37 1 3.0045 2.6918 5.8874 38 1 5.3800 2.3103 5.3696 39 1 6.0165 0.8753 3.4743 40 1 4.2779 -0.1998 2.1036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319685331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 26.010966 kcal Electronic energy + Delta-G solvation = -19173.543597 eV Core-core repulsion = 16567.106081 eV Total energy + Delta-G solvation = -2606.437516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77294 -38.59473 -35.17902 -34.37871 -31.84898 -31.24515 -30.44651 -28.49199 -27.13584 -25.16070 -23.92181 -22.97608 -21.79775 -19.85551 -18.66451 -18.35608 -16.73170 -16.27647 -15.97676 -15.81248 -15.12842 -14.98588 -14.49370 -14.44057 -14.29618 -13.97057 -13.64289 -13.41620 -13.10695 -12.88304 -12.70267 -12.62536 -12.52338 -12.32737 -12.06439 -11.96045 -11.85730 -11.52695 -11.33201 -11.00088 -10.71912 -10.48706 -10.33689 -9.59548 -8.28597 -7.70599 -6.15658 0.77440 1.00360 1.36324 1.41025 1.50122 2.37655 2.66900 3.12207 3.25476 3.92070 4.09836 4.21799 4.33798 4.38752 4.47849 4.61707 4.72204 4.77457 4.81896 4.84470 4.97739 5.00676 5.06206 5.08803 5.14624 5.21318 5.27074 5.34274 5.40830 5.44411 5.54954 5.57537 5.78228 5.84394 5.88507 5.96705 6.08432 6.30664 6.43647 6.66287 6.98916 7.09452 7.43867 8.90190 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.010121 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.072100 B = 2765.973213 C = 3563.845550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.148 3.852 5 H 0.095 0.905 6 C -0.159 4.159 7 N -0.608 5.608 8 C 0.267 3.733 9 C -0.505 4.505 10 H 0.071 0.929 11 C 0.015 3.985 12 N -0.922 5.922 13 Si 0.940 3.060 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.284 1.284 17 C 0.220 3.780 18 C -0.215 4.215 19 C -0.085 4.085 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.222 4.222 23 H 0.028 0.972 24 H 0.039 0.961 25 H 0.128 0.872 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.026 0.974 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 -2.044 -3.220 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.107 4.107 3 C -0.200 4.200 4 C 0.044 3.956 5 H 0.113 0.887 6 C -0.217 4.217 7 N -0.315 5.315 8 C 0.146 3.854 9 C -0.543 4.543 10 H 0.089 0.911 11 C -0.185 4.185 12 N -0.562 5.562 13 Si 0.767 3.233 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.210 1.210 17 C 0.115 3.885 18 C -0.238 4.238 19 C -0.104 4.104 20 C -0.221 4.221 21 C -0.093 4.093 22 C -0.244 4.244 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.145 0.855 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.161 -2.171 -3.279 11.834 hybrid contribution -1.232 0.842 -0.132 1.499 sum 9.929 -1.329 -3.411 10.582 Atomic orbital electron populations 1.23155 0.96156 1.02729 1.05017 1.21291 0.96205 0.96119 0.97119 1.21849 0.99887 0.96865 1.01404 1.21157 0.99514 0.90464 0.84474 0.88679 1.22191 1.01274 0.96048 1.02189 1.46975 1.04731 1.53869 1.25899 1.18876 0.77411 0.95641 0.93516 1.21736 0.97685 1.03901 1.30977 0.91112 1.25613 0.97586 0.99655 0.95631 1.70040 1.08955 1.38167 1.39016 0.85756 0.78472 0.80959 0.78143 1.19236 1.20704 1.20994 1.18129 0.89207 0.90883 0.90235 1.20852 0.99492 1.03728 0.99720 1.21057 0.93270 0.97830 0.98244 1.21025 0.95464 1.04464 1.01132 1.21108 0.99294 0.95011 0.93932 1.20844 0.90629 1.07938 1.05013 0.95264 0.94233 0.85515 0.90446 0.92843 0.93700 0.92937 0.93280 0.89815 0.93032 0.95583 0.98899 0.92787 0.88435 0.85942 0.84688 0.83869 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.45 7.68 71.98 0.55 -7.89 16 2 C -0.09 -2.95 2.80 -10.80 -0.03 -2.98 16 3 C -0.14 -4.99 8.84 71.98 0.64 -4.35 16 4 C 0.15 4.92 2.60 44.99 0.12 5.04 16 5 H 0.10 2.77 5.32 -2.39 -0.01 2.76 16 6 C -0.16 -4.93 8.56 71.98 0.62 -4.31 16 7 N -0.61 -24.56 1.62 -677.66 -1.10 -25.66 16 8 C 0.27 12.98 3.77 85.63 0.32 13.30 16 9 C -0.50 -25.79 4.90 25.60 0.13 -25.67 16 10 H 0.07 3.66 4.84 -2.91 -0.01 3.65 16 11 C 0.01 0.78 5.46 84.66 0.46 1.24 16 12 N -0.92 -52.09 13.29 21.45 0.28 -51.80 16 13 Si 0.94 42.98 29.54 68.60 2.03 45.00 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 C 0.22 8.68 6.33 38.22 0.24 8.92 16 18 C -0.22 -8.97 8.98 22.40 0.20 -8.76 16 19 C -0.09 -2.95 10.04 22.25 0.22 -2.73 16 20 C -0.20 -5.87 10.04 22.29 0.22 -5.65 16 21 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 22 C -0.22 -7.18 9.32 22.40 0.21 -6.97 16 23 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 1.50 5.96 -2.39 -0.01 1.49 16 25 H 0.13 5.92 2.35 -9.92 -0.02 5.89 16 26 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 2.20 4.26 -2.39 -0.01 2.19 16 30 H 0.05 1.75 4.63 -2.39 -0.01 1.74 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.34 5.10 -2.39 -0.01 1.32 16 34 H -0.01 -0.38 6.94 -2.38 -0.02 -0.40 16 35 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 36 H 0.10 4.73 6.08 -2.91 -0.02 4.71 16 37 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.13 3.67 5.74 -2.91 -0.02 3.65 16 Total: -1.00 -56.86 297.69 6.35 -50.50 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 1.01 Total: 24.67 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 4.13 Total: -42.71 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.81 Total: -77.46 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -56.86 6.35 -50.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319685331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.514 kcal (2) G-P(sol) polarization free energy of solvation -56.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds