Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47306 * 2 1 4 4 N 1.46906 * 109.46922 * 119.99976 * 2 1 3 5 5 C 1.46902 * 110.99776 * 154.09138 * 4 2 1 6 6 H 1.08994 * 109.47332 * 36.34155 * 5 4 2 7 7 C 1.52997 * 109.46951 * 156.33930 * 5 4 2 8 8 C 1.52995 * 109.47323 * 296.54193 * 7 5 4 9 9 C 1.50704 * 109.46910 * 180.02562 * 8 7 5 10 10 H 1.07990 * 120.00235 * 359.72104 * 9 8 7 11 11 C 1.37883 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99735 * 359.72709 * 11 9 8 13 13 Si 1.86795 * 119.99935 * 179.72099 * 11 9 8 14 14 H 1.48497 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47072 * 120.00386 * 13 11 9 16 16 H 1.48501 * 109.47137 * 240.00102 * 13 11 9 17 17 C 1.50698 * 109.46696 * 276.33835 * 5 4 2 18 18 C 1.38240 * 120.00005 * 312.56158 * 17 5 4 19 19 C 1.38235 * 119.99715 * 179.81219 * 18 17 5 20 20 C 1.38235 * 120.00061 * 0.39637 * 19 18 17 21 21 C 1.38235 * 120.00404 * 359.85706 * 20 19 18 22 22 C 1.38238 * 119.99574 * 359.95525 * 21 20 19 23 23 H 1.09001 * 109.47423 * 300.00233 * 1 2 3 24 24 H 1.08999 * 109.47294 * 60.00392 * 1 2 3 25 25 H 1.09006 * 109.47390 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47423 * 239.99767 * 2 1 3 27 27 H 1.09001 * 109.46959 * 65.01111 * 3 2 1 28 28 H 1.09000 * 109.47278 * 185.01261 * 3 2 1 29 29 H 1.09000 * 109.46834 * 305.01411 * 3 2 1 30 30 H 1.00895 * 110.99820 * 30.12908 * 4 2 1 31 31 H 1.08998 * 109.47329 * 176.53589 * 7 5 4 32 32 H 1.09002 * 109.47049 * 56.54095 * 7 5 4 33 33 H 1.09000 * 109.47331 * 60.00228 * 8 7 5 34 34 H 1.09002 * 109.46979 * 299.99945 * 8 7 5 35 35 H 0.97004 * 119.99631 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.00041 * 0.02562 * 18 17 5 37 37 H 1.08007 * 120.00179 * 180.23153 * 19 18 17 38 38 H 1.08007 * 119.99906 * 179.83364 * 20 19 18 39 39 H 1.07997 * 120.00441 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.99922 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3581 -1.2541 0.9736 6 1 3.9340 -0.5777 0.3420 7 6 4.0709 -1.4292 2.3160 8 6 4.2748 -0.0600 2.9676 9 6 4.9775 -0.2326 4.2896 10 1 5.2471 -1.2203 4.6330 11 6 5.2714 0.8703 5.0632 12 7 4.9433 2.0733 4.6448 13 14 6.1353 0.6559 6.7054 14 1 6.3940 -0.7868 6.9439 15 1 7.4244 1.3930 6.6866 16 1 5.2749 1.1911 7.7910 17 6 3.2329 -2.5927 0.2929 18 6 2.3353 -3.5295 0.7702 19 6 2.2177 -4.7560 0.1434 20 6 3.0034 -5.0487 -0.9556 21 6 3.9046 -4.1139 -1.4297 22 6 4.0195 -2.8860 -0.8053 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.7518 1.9297 0.9315 28 1 3.1263 1.4438 -0.0898 29 1 1.6052 1.9816 -0.8417 30 1 1.3720 -1.4082 1.4935 31 1 5.0393 -1.9025 2.1542 32 1 3.4649 -2.0561 2.9701 33 1 3.3064 0.4132 3.1295 34 1 4.8809 0.5670 2.3136 35 1 5.1498 2.8492 5.1892 36 1 1.7236 -3.3019 1.6307 37 1 1.5138 -5.4866 0.5140 38 1 2.9134 -6.0080 -1.4437 39 1 4.5188 -4.3428 -2.2881 40 1 4.7239 -2.1558 -1.1754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336685610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = 2.588835 kcal Electronic energy + Delta-G solvation = -17978.900014 eV Core-core repulsion = 15371.446839 eV Total energy + Delta-G solvation = -2607.453176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.54382 -37.00697 -34.06287 -32.58550 -30.83812 -30.21898 -29.03478 -26.97541 -25.80212 -23.37163 -22.50535 -21.02797 -20.15713 -19.58066 -16.99220 -16.08500 -15.64783 -15.20600 -14.63882 -14.42232 -14.21018 -14.03889 -13.30135 -13.12027 -12.87871 -12.68075 -12.19826 -11.99034 -11.86659 -11.57770 -11.28648 -11.27880 -10.97213 -10.90028 -10.84548 -10.51901 -10.41740 -10.29077 -9.60873 -9.34076 -8.93383 -8.83016 -8.44304 -8.22205 -7.90442 -5.86624 -3.87425 1.47292 1.49211 3.37663 3.44981 3.49312 3.89320 4.53225 4.56431 4.93606 4.98962 5.06853 5.21021 5.24099 5.29296 5.49022 5.56410 5.61422 5.63679 5.78494 5.88009 6.02763 6.07807 6.11770 6.15193 6.17913 6.26974 6.42087 6.54784 6.57063 6.64442 6.74601 6.78312 6.90822 7.10341 7.31592 7.56435 7.84414 7.87848 8.09841 8.25834 8.59719 9.21627 9.75055 11.24388 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006015 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.419697 B = 4654.009229 C = 5583.516012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.661 5.661 5 C 0.125 3.875 6 H 0.080 0.920 7 C -0.092 4.092 8 C 0.032 3.968 9 C -0.517 4.517 10 H 0.051 0.949 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.097 4.097 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.116 4.116 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.335 0.665 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.008 0.992 35 H 0.257 0.743 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -9.429 -12.766 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 C -0.197 4.197 4 N -0.292 5.292 5 C 0.015 3.985 6 H 0.099 0.901 7 C -0.130 4.130 8 C -0.005 4.005 9 C -0.556 4.556 10 H 0.069 0.931 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.714 3.286 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.151 4.151 21 C -0.139 4.139 22 C -0.135 4.135 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.967 -8.646 -12.409 16.651 hybrid contribution 0.371 -0.896 0.351 1.031 sum -6.597 -9.541 -12.057 16.731 Atomic orbital electron populations 1.21963 0.95392 1.01331 1.02300 1.21473 0.94110 0.95804 0.91627 1.21788 1.01163 0.95088 1.01620 1.60730 1.03072 1.32705 1.32721 1.20901 0.90988 0.88769 0.97829 0.90140 1.21635 0.97256 1.01697 0.92375 1.18994 0.97536 0.90089 0.93930 1.21379 1.37286 0.92615 1.04276 0.93090 1.24986 0.96151 0.95409 0.97835 1.69994 1.47863 0.97782 1.37763 0.86639 0.79377 0.78041 0.84530 1.19901 1.21193 1.21134 1.21061 0.95393 0.98219 0.95212 1.20989 0.99123 0.93601 0.99752 1.21092 0.99562 0.96848 0.96234 1.21063 0.97301 0.99248 0.97486 1.21111 0.98759 0.94033 0.99978 1.21121 0.99328 0.97052 0.95982 0.91646 0.92450 0.93263 0.94562 0.91400 0.92701 0.93503 0.84558 0.93481 0.93372 0.94702 0.97404 0.93332 0.86053 0.86426 0.86609 0.86484 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.17 37.16 0.34 -1.49 16 2 C 0.08 1.14 3.03 -67.71 -0.21 0.94 16 3 C -0.14 -2.11 9.39 37.16 0.35 -1.76 16 4 N -0.66 -10.84 5.44 -100.95 -0.55 -11.38 16 5 C 0.13 2.15 2.06 -68.87 -0.14 2.01 16 6 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 7 C -0.09 -1.93 4.74 -26.74 -0.13 -2.06 16 8 C 0.03 0.83 4.85 -27.88 -0.14 0.69 16 9 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.66 5.46 -17.81 -0.10 1.57 16 12 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 13 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 C -0.10 -1.46 4.53 -104.62 -0.47 -1.93 16 18 C -0.12 -1.61 8.93 -39.58 -0.35 -1.96 16 19 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.61 9.67 -39.58 -0.38 -1.99 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.04 0.52 7.58 -51.93 -0.39 0.13 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.90 7.54 -51.93 -0.39 0.51 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.33 5.05 6.35 -39.29 -0.25 4.80 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.03 0.98 7.70 -51.93 -0.40 0.58 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.60 6.94 -52.49 -0.36 1.24 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.54 7.99 -52.49 -0.42 1.12 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -30.92 327.09 -9.41 -40.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.77 Total: 2.61 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -2.73 Total: -26.95 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.19 Total: -38.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.92 -9.41 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336685610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.920 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds