Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47306 * 2 1 4 4 N 1.46906 * 109.46922 * 119.99976 * 2 1 3 5 5 C 1.46902 * 110.99776 * 154.09138 * 4 2 1 6 6 H 1.08994 * 109.47332 * 36.34155 * 5 4 2 7 7 C 1.52997 * 109.46951 * 156.33930 * 5 4 2 8 8 C 1.52995 * 109.47323 * 296.54193 * 7 5 4 9 9 C 1.50704 * 109.46910 * 180.02562 * 8 7 5 10 10 H 1.07990 * 120.00235 * 359.72104 * 9 8 7 11 11 C 1.37883 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99735 * 359.72709 * 11 9 8 13 13 Si 1.86795 * 119.99935 * 179.72099 * 11 9 8 14 14 H 1.48497 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47072 * 120.00386 * 13 11 9 16 16 H 1.48501 * 109.47137 * 240.00102 * 13 11 9 17 17 C 1.50698 * 109.46696 * 276.33835 * 5 4 2 18 18 C 1.38240 * 120.00005 * 312.56158 * 17 5 4 19 19 C 1.38235 * 119.99715 * 179.81219 * 18 17 5 20 20 C 1.38235 * 120.00061 * 0.39637 * 19 18 17 21 21 C 1.38235 * 120.00404 * 359.85706 * 20 19 18 22 22 C 1.38238 * 119.99574 * 359.95525 * 21 20 19 23 23 H 1.09001 * 109.47423 * 300.00233 * 1 2 3 24 24 H 1.08999 * 109.47294 * 60.00392 * 1 2 3 25 25 H 1.09006 * 109.47390 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47423 * 239.99767 * 2 1 3 27 27 H 1.09001 * 109.46959 * 65.01111 * 3 2 1 28 28 H 1.09000 * 109.47278 * 185.01261 * 3 2 1 29 29 H 1.09000 * 109.46834 * 305.01411 * 3 2 1 30 30 H 1.00895 * 110.99820 * 30.12908 * 4 2 1 31 31 H 1.08998 * 109.47329 * 176.53589 * 7 5 4 32 32 H 1.09002 * 109.47049 * 56.54095 * 7 5 4 33 33 H 1.09000 * 109.47331 * 60.00228 * 8 7 5 34 34 H 1.09002 * 109.46979 * 299.99945 * 8 7 5 35 35 H 0.97004 * 119.99631 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.00041 * 0.02562 * 18 17 5 37 37 H 1.08007 * 120.00179 * 180.23153 * 19 18 17 38 38 H 1.08007 * 119.99906 * 179.83364 * 20 19 18 39 39 H 1.07997 * 120.00441 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.99922 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3581 -1.2541 0.9736 6 1 3.9340 -0.5777 0.3420 7 6 4.0709 -1.4292 2.3160 8 6 4.2748 -0.0600 2.9676 9 6 4.9775 -0.2326 4.2896 10 1 5.2471 -1.2203 4.6330 11 6 5.2714 0.8703 5.0632 12 7 4.9433 2.0733 4.6448 13 14 6.1353 0.6559 6.7054 14 1 6.3940 -0.7868 6.9439 15 1 7.4244 1.3930 6.6866 16 1 5.2749 1.1911 7.7910 17 6 3.2329 -2.5927 0.2929 18 6 2.3353 -3.5295 0.7702 19 6 2.2177 -4.7560 0.1434 20 6 3.0034 -5.0487 -0.9556 21 6 3.9046 -4.1139 -1.4297 22 6 4.0195 -2.8860 -0.8053 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.7518 1.9297 0.9315 28 1 3.1263 1.4438 -0.0898 29 1 1.6052 1.9816 -0.8417 30 1 1.3720 -1.4082 1.4935 31 1 5.0393 -1.9025 2.1542 32 1 3.4649 -2.0561 2.9701 33 1 3.3064 0.4132 3.1295 34 1 4.8809 0.5670 2.3136 35 1 5.1498 2.8492 5.1892 36 1 1.7236 -3.3019 1.6307 37 1 1.5138 -5.4866 0.5140 38 1 2.9134 -6.0080 -1.4437 39 1 4.5188 -4.3428 -2.2881 40 1 4.7239 -2.1558 -1.1754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336685610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = -14.539858 kcal Electronic energy + Delta-G solvation = -17979.642770 eV Core-core repulsion = 15371.446839 eV Total energy + Delta-G solvation = -2608.195932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65624 -38.19696 -35.79599 -34.37427 -31.89111 -31.81407 -30.29754 -28.17767 -27.57440 -24.97009 -23.55827 -22.51604 -21.47162 -21.01368 -18.48939 -17.86311 -16.88597 -16.53881 -16.18061 -15.74942 -15.53499 -15.25078 -14.61653 -14.45088 -14.22163 -14.04158 -13.64678 -13.39101 -13.32813 -12.99306 -12.88939 -12.68531 -12.48449 -12.33451 -12.07210 -11.99670 -11.83305 -11.79403 -11.46545 -11.25842 -11.05532 -10.48741 -9.81216 -9.59949 -9.19366 -8.13315 -6.23649 0.46175 0.51280 1.39754 1.40164 1.53375 2.43860 2.89315 3.18854 3.29020 3.80011 3.95898 4.11086 4.17262 4.18700 4.30015 4.38450 4.46892 4.60766 4.66535 4.70920 4.80548 4.83028 4.97482 5.01476 5.04729 5.07177 5.12537 5.19117 5.32004 5.37513 5.45971 5.57866 5.60582 5.62578 5.69952 5.88563 6.03328 6.14088 6.29484 6.34897 6.62780 6.95553 7.44208 8.98078 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006015 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.419697 B = 4654.009229 C = 5583.516012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 C -0.136 4.136 4 N -0.679 5.679 5 C 0.139 3.861 6 H 0.064 0.936 7 C -0.078 4.078 8 C 0.044 3.956 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.001 3.999 12 N -0.931 5.931 13 Si 0.960 3.040 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.131 4.131 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.342 0.658 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.008 0.992 34 H -0.024 1.024 35 H 0.261 0.739 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -11.577 -13.372 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 C -0.194 4.194 4 N -0.312 5.312 5 C 0.029 3.971 6 H 0.083 0.917 7 C -0.116 4.116 8 C 0.007 3.993 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.785 3.215 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.116 4.116 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.162 0.838 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.027 0.973 34 H -0.005 1.005 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.486 -10.807 -13.024 18.505 hybrid contribution 0.526 -0.234 0.492 0.757 sum -6.960 -11.041 -12.532 18.094 Atomic orbital electron populations 1.21898 0.93160 1.02306 1.02826 1.21487 0.95833 0.94596 0.90855 1.21774 0.99901 0.96246 1.01442 1.60645 1.02973 1.33245 1.34305 1.20474 0.90938 0.90363 0.95341 0.91730 1.21391 0.97623 0.98208 0.94399 1.18777 0.95113 0.92315 0.93110 1.21805 1.37816 0.92893 1.05521 0.92905 1.25923 0.96788 0.94952 1.02003 1.70132 1.48837 0.98713 1.39477 0.85475 0.78192 0.78497 0.79324 1.18839 1.20403 1.20320 1.20768 0.97264 0.97169 0.96364 1.21088 0.99066 0.94283 1.00125 1.21415 0.99862 0.96425 0.96097 1.21483 0.96051 1.00222 0.96871 1.21424 0.98966 0.93159 1.00382 1.21259 0.99395 0.98216 0.96120 0.92513 0.90485 0.92055 0.94115 0.93892 0.94933 0.90679 0.83779 0.94004 0.93405 0.97308 1.00515 0.93019 0.86096 0.83903 0.83498 0.83979 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.17 71.98 0.66 -2.63 16 2 C 0.08 2.35 3.03 44.91 0.14 2.49 16 3 C -0.14 -4.27 9.39 71.98 0.68 -3.60 16 4 N -0.68 -22.98 5.44 -473.31 -2.57 -25.55 16 5 C 0.14 4.97 2.06 44.17 0.09 5.06 16 6 H 0.06 2.47 7.02 -2.39 -0.02 2.46 16 7 C -0.08 -3.43 4.74 30.59 0.14 -3.28 16 8 C 0.04 2.44 4.85 29.85 0.14 2.58 16 9 C -0.54 -32.36 9.11 25.60 0.23 -32.12 16 10 H 0.05 3.06 7.74 -2.92 -0.02 3.03 16 11 C 0.00 0.04 5.46 84.66 0.46 0.51 16 12 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 13 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 14 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C -0.11 -3.39 4.53 -19.86 -0.09 -3.48 16 18 C -0.13 -3.36 8.93 22.27 0.20 -3.16 16 19 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 21 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 22 C -0.13 -3.53 9.67 22.27 0.22 -3.31 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 26 H 0.04 1.15 7.58 -2.39 -0.02 1.13 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.13 7.54 -2.39 -0.02 1.11 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.34 10.44 6.35 -89.70 -0.57 9.87 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 33 H 0.01 0.51 7.70 -2.39 -0.02 0.49 16 34 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.12 3.11 6.94 -2.91 -0.02 3.09 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.12 3.09 7.99 -2.91 -0.02 3.07 16 Total: -1.00 -68.26 327.09 3.70 -64.56 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.42 Total: 19.44 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 3.54 Total: -48.00 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.29 Total: -83.95 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -68.26 3.70 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336685610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.019 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds