Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 N 1.46899 * 109.47140 * 120.00207 * 2 1 3 5 5 C 1.46901 * 111.00016 * 152.23963 * 4 2 1 6 6 H 1.09009 * 109.46796 * 328.99783 * 5 4 2 7 7 C 1.52994 * 109.47303 * 208.99782 * 5 4 2 8 8 C 1.53006 * 109.47347 * 65.80947 * 7 5 4 9 9 C 1.50693 * 109.47154 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99945 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00051 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47105 * 59.99885 * 13 11 9 15 15 H 1.48500 * 109.47132 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47181 * 299.99797 * 13 11 9 17 17 C 1.50698 * 109.47498 * 88.99212 * 5 4 2 18 18 C 1.38242 * 119.99393 * 45.46379 * 17 5 4 19 19 C 1.38237 * 119.99442 * 179.79333 * 18 17 5 20 20 C 1.38230 * 120.00034 * 0.43205 * 19 18 17 21 21 C 1.38230 * 120.00384 * 359.82024 * 20 19 18 22 22 C 1.38228 * 120.00444 * 225.73523 * 17 5 4 23 23 H 1.09001 * 109.46891 * 299.99710 * 1 2 3 24 24 H 1.09001 * 109.47020 * 59.99797 * 1 2 3 25 25 H 1.08997 * 109.46948 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46891 * 240.00290 * 2 1 3 27 27 H 1.09001 * 109.47483 * 65.62877 * 3 2 1 28 28 H 1.08996 * 109.47249 * 185.62424 * 3 2 1 29 29 H 1.09007 * 109.47578 * 305.62638 * 3 2 1 30 30 H 1.00901 * 110.99998 * 28.28336 * 4 2 1 31 31 H 1.09006 * 109.47005 * 305.81878 * 7 5 4 32 32 H 1.08994 * 109.47841 * 185.81562 * 7 5 4 33 33 H 1.09005 * 109.46520 * 59.99997 * 8 7 5 34 34 H 1.08996 * 109.46901 * 300.00567 * 8 7 5 35 35 H 0.97006 * 119.99671 * 180.02562 * 12 11 9 36 36 H 1.08000 * 120.00332 * 359.97438 * 18 17 5 37 37 H 1.08008 * 119.99704 * 180.27356 * 19 18 17 38 38 H 1.08006 * 120.00012 * 179.84368 * 20 19 18 39 39 H 1.07994 * 120.00427 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99766 * 359.97438 * 22 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3394 -1.2916 0.9595 6 1 3.4225 -1.5796 -0.0886 7 6 3.5059 -2.5293 1.8433 8 6 2.5077 -3.6045 1.4086 9 6 2.6713 -4.8233 2.2796 10 1 3.4127 -4.8303 3.0648 11 6 1.8745 -5.9296 2.0739 12 7 0.9720 -5.9211 1.1173 13 14 2.0768 -7.4402 3.1539 14 1 1.8230 -7.0736 4.5704 15 1 1.1081 -8.4837 2.7320 16 1 3.4597 -7.9641 3.0183 17 6 4.4142 -0.2889 1.2916 18 6 4.3358 0.4471 2.4592 19 6 5.3240 1.3638 2.7659 20 6 6.3858 1.5509 1.9008 21 6 6.4615 0.8187 0.7308 22 6 5.4755 -0.1011 0.4261 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7613 1.9265 0.9361 28 1 3.1253 1.4442 -0.1007 29 1 1.5968 1.9847 -0.8353 30 1 1.3582 -1.3878 1.5109 31 1 3.3205 -2.2608 2.8833 32 1 4.5208 -2.9139 1.7427 33 1 2.6930 -3.8730 0.3686 34 1 1.4928 -3.2199 1.5093 35 1 0.4111 -6.6993 0.9729 36 1 3.5041 0.3038 3.1331 37 1 5.2650 1.9357 3.6802 38 1 7.1565 2.2690 2.1392 39 1 7.2912 0.9646 0.0552 40 1 5.5347 -0.6733 -0.4879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336685613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = 0.930957 kcal Electronic energy + Delta-G solvation = -18015.952559 eV Core-core repulsion = 15408.427492 eV Total energy + Delta-G solvation = -2607.525067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31960 -37.03428 -34.17005 -32.61371 -30.62015 -30.30798 -29.05708 -26.92196 -25.82321 -23.43858 -22.29832 -20.99143 -20.24607 -19.56844 -16.74012 -16.22928 -15.43248 -15.12615 -14.83101 -14.46959 -14.26228 -13.86090 -13.13620 -13.04394 -12.88656 -12.46546 -12.35248 -12.11938 -11.91914 -11.76534 -11.34916 -11.10334 -10.91103 -10.86011 -10.79391 -10.66287 -10.48481 -10.28711 -9.78622 -9.38872 -9.16635 -8.62605 -8.37810 -8.27455 -8.03935 -6.02679 -4.04872 1.65997 1.71729 3.32563 3.36823 3.39689 4.08542 4.44295 4.56458 5.12192 5.18654 5.21018 5.27823 5.33124 5.35547 5.44855 5.63428 5.77547 5.81778 5.86339 5.91584 6.00275 6.07587 6.08949 6.17161 6.27150 6.34910 6.40441 6.52408 6.54330 6.69749 6.77373 6.86181 7.00130 7.02875 7.31095 7.55024 7.59446 7.76577 7.91178 7.97531 8.39542 9.01363 9.59478 11.08431 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.005926 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.679251 B = 4724.021695 C = 5666.833631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.080 3.920 3 C -0.136 4.136 4 N -0.680 5.680 5 C 0.122 3.878 6 H 0.049 0.951 7 C -0.110 4.110 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.052 4.052 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.124 4.124 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.355 0.645 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 14.711 -1.539 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 C -0.194 4.194 4 N -0.315 5.315 5 C 0.013 3.987 6 H 0.067 0.933 7 C -0.148 4.148 8 C -0.014 4.014 9 C -0.558 4.558 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.053 4.053 18 C -0.105 4.105 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.142 4.142 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.178 0.822 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.024 15.152 -1.337 16.019 hybrid contribution -0.113 -1.644 -0.062 1.649 sum 4.911 13.508 -1.399 14.441 Atomic orbital electron populations 1.21994 0.95201 1.02286 1.01817 1.21526 0.94326 0.95278 0.91865 1.21811 1.00971 0.95635 1.00971 1.60552 1.04387 1.34330 1.32208 1.20672 0.87377 0.91951 0.98746 0.93299 1.21864 1.01190 0.93338 0.98404 1.19123 0.93453 0.92307 0.96564 1.21180 1.19021 0.98998 1.16620 0.92700 1.25009 0.95235 0.98694 0.95383 1.69948 1.21950 1.30179 1.31430 0.86659 0.77881 0.82560 0.80927 1.20202 1.21305 1.20261 1.20031 0.95038 0.96127 0.94123 1.21007 0.97927 0.94837 0.96720 1.21135 0.94972 0.99188 0.99374 1.21009 0.98612 1.00414 0.95222 1.20993 0.98808 0.97245 0.97368 1.21053 0.94846 0.98715 0.99629 0.92080 0.92526 0.92264 0.94071 0.92368 0.92861 0.93547 0.82232 0.92265 0.92609 0.96892 0.96590 0.92961 0.85578 0.86750 0.86950 0.86803 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.16 37.16 0.34 -1.72 16 2 C 0.08 1.17 3.24 -67.71 -0.22 0.95 16 3 C -0.14 -1.80 9.15 37.16 0.34 -1.46 16 4 N -0.68 -11.13 5.63 -100.95 -0.57 -11.70 16 5 C 0.12 2.12 2.24 -68.87 -0.15 1.97 16 6 H 0.05 0.89 7.12 -51.92 -0.37 0.52 16 7 C -0.11 -2.25 4.62 -26.73 -0.12 -2.38 16 8 C 0.02 0.57 4.82 -27.88 -0.13 0.43 16 9 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.05 -0.82 3.31 -104.62 -0.35 -1.17 16 18 C -0.09 -1.30 9.28 -39.58 -0.37 -1.67 16 19 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 20 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 21 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 22 C -0.12 -1.80 9.61 -39.59 -0.38 -2.18 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.04 0.64 7.33 -51.93 -0.38 0.26 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.75 6.81 -51.93 -0.35 0.40 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.36 6.40 6.08 -39.29 -0.24 6.16 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.41 6.49 -51.93 -0.34 0.07 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 1.93 7.89 -52.49 -0.41 1.52 16 37 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.57 8.00 -52.49 -0.42 1.15 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -28.89 324.99 -9.31 -38.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.71 Total: 4.55 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.65 Total: -26.72 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.17 Total: -37.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.89 -9.31 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336685613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.128 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds