Wall clock time and date at job start Mon Mar 30 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 N 1.46899 * 109.47140 * 120.00207 * 2 1 3 5 5 C 1.46901 * 111.00016 * 152.23963 * 4 2 1 6 6 H 1.09009 * 109.46796 * 328.99783 * 5 4 2 7 7 C 1.52994 * 109.47303 * 208.99782 * 5 4 2 8 8 C 1.53006 * 109.47347 * 65.80947 * 7 5 4 9 9 C 1.50693 * 109.47154 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99945 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00051 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47105 * 59.99885 * 13 11 9 15 15 H 1.48500 * 109.47132 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47181 * 299.99797 * 13 11 9 17 17 C 1.50698 * 109.47498 * 88.99212 * 5 4 2 18 18 C 1.38242 * 119.99393 * 45.46379 * 17 5 4 19 19 C 1.38237 * 119.99442 * 179.79333 * 18 17 5 20 20 C 1.38230 * 120.00034 * 0.43205 * 19 18 17 21 21 C 1.38230 * 120.00384 * 359.82024 * 20 19 18 22 22 C 1.38228 * 120.00444 * 225.73523 * 17 5 4 23 23 H 1.09001 * 109.46891 * 299.99710 * 1 2 3 24 24 H 1.09001 * 109.47020 * 59.99797 * 1 2 3 25 25 H 1.08997 * 109.46948 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46891 * 240.00290 * 2 1 3 27 27 H 1.09001 * 109.47483 * 65.62877 * 3 2 1 28 28 H 1.08996 * 109.47249 * 185.62424 * 3 2 1 29 29 H 1.09007 * 109.47578 * 305.62638 * 3 2 1 30 30 H 1.00901 * 110.99998 * 28.28336 * 4 2 1 31 31 H 1.09006 * 109.47005 * 305.81878 * 7 5 4 32 32 H 1.08994 * 109.47841 * 185.81562 * 7 5 4 33 33 H 1.09005 * 109.46520 * 59.99997 * 8 7 5 34 34 H 1.08996 * 109.46901 * 300.00567 * 8 7 5 35 35 H 0.97006 * 119.99671 * 180.02562 * 12 11 9 36 36 H 1.08000 * 120.00332 * 359.97438 * 18 17 5 37 37 H 1.08008 * 119.99704 * 180.27356 * 19 18 17 38 38 H 1.08006 * 120.00012 * 179.84368 * 20 19 18 39 39 H 1.07994 * 120.00427 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99766 * 359.97438 * 22 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3394 -1.2916 0.9595 6 1 3.4225 -1.5796 -0.0886 7 6 3.5059 -2.5293 1.8433 8 6 2.5077 -3.6045 1.4086 9 6 2.6713 -4.8233 2.2796 10 1 3.4127 -4.8303 3.0648 11 6 1.8745 -5.9296 2.0739 12 7 0.9720 -5.9211 1.1173 13 14 2.0768 -7.4402 3.1539 14 1 1.8230 -7.0736 4.5704 15 1 1.1081 -8.4837 2.7320 16 1 3.4597 -7.9641 3.0183 17 6 4.4142 -0.2889 1.2916 18 6 4.3358 0.4471 2.4592 19 6 5.3240 1.3638 2.7659 20 6 6.3858 1.5509 1.9008 21 6 6.4615 0.8187 0.7308 22 6 5.4755 -0.1011 0.4261 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7613 1.9265 0.9361 28 1 3.1253 1.4442 -0.1007 29 1 1.5968 1.9847 -0.8353 30 1 1.3582 -1.3878 1.5109 31 1 3.3205 -2.2608 2.8833 32 1 4.5208 -2.9139 1.7427 33 1 2.6930 -3.8730 0.3686 34 1 1.4928 -3.2199 1.5093 35 1 0.4111 -6.6993 0.9729 36 1 3.5041 0.3038 3.1331 37 1 5.2650 1.9357 3.6802 38 1 7.1565 2.2690 2.1392 39 1 7.2912 0.9646 0.0552 40 1 5.5347 -0.6733 -0.4879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336685613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:06 Heat of formation + Delta-G solvation = -14.127330 kcal Electronic energy + Delta-G solvation = -18016.605535 eV Core-core repulsion = 15408.427492 eV Total energy + Delta-G solvation = -2608.178043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50161 -38.27857 -35.86926 -34.38932 -31.88009 -31.64545 -30.44721 -28.01554 -27.59635 -25.07203 -23.40433 -22.51632 -21.48759 -21.01071 -18.60388 -17.57439 -16.71752 -16.59068 -16.36643 -15.98338 -15.46643 -15.09163 -14.60083 -14.49352 -14.13872 -13.94405 -13.70356 -13.46020 -13.30528 -13.02133 -12.89571 -12.75571 -12.53533 -12.27124 -12.05669 -11.98157 -11.85556 -11.71174 -11.56914 -11.28858 -11.11203 -10.55744 -9.68941 -9.44555 -9.37784 -8.21276 -6.32000 0.57942 0.65034 1.39180 1.41636 1.49613 2.39973 2.98786 3.11807 3.26442 3.91127 4.06312 4.12843 4.19826 4.28039 4.36793 4.42152 4.45481 4.47447 4.67414 4.76959 4.81788 4.83163 4.97593 4.99404 5.03462 5.05009 5.12540 5.23246 5.30527 5.31346 5.44230 5.49250 5.66967 5.69767 5.74357 5.81323 5.85992 6.22392 6.24450 6.29971 6.47389 6.83305 7.37062 8.89741 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.005926 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.679251 B = 4724.021695 C = 5666.833631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.124 4.124 4 N -0.676 5.676 5 C 0.133 3.867 6 H 0.034 0.966 7 C -0.094 4.094 8 C 0.031 3.969 9 C -0.544 4.544 10 H 0.056 0.944 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.962 3.038 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.269 1.269 17 C -0.069 4.069 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.137 4.137 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.342 0.658 31 H 0.057 0.943 32 H 0.049 0.951 33 H -0.016 1.016 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 16.047 -0.818 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 C -0.182 4.182 4 N -0.310 5.310 5 C 0.023 3.977 6 H 0.052 0.948 7 C -0.132 4.132 8 C -0.006 4.006 9 C -0.582 4.582 10 H 0.074 0.926 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.786 3.214 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.156 4.156 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.002 0.998 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.268 16.508 -0.619 17.669 hybrid contribution -0.471 -2.010 -0.317 2.088 sum 5.797 14.498 -0.936 15.642 Atomic orbital electron populations 1.21947 0.94033 1.01506 1.03190 1.21645 0.95337 0.95948 0.90476 1.21701 1.00367 0.94368 1.01787 1.60670 1.03686 1.33474 1.33154 1.20444 0.88817 0.91453 0.96943 0.94805 1.21612 0.99248 0.93506 0.98784 1.18970 0.93991 0.93084 0.94525 1.21615 1.19194 1.00307 1.17093 0.92551 1.25910 0.94761 1.01997 0.96719 1.70076 1.22749 1.31207 1.32980 0.85554 0.78149 0.78469 0.79213 1.19184 1.20730 1.19412 1.19837 0.95087 0.96683 0.95335 1.21010 0.98601 0.95777 0.96418 1.21419 0.94426 0.98510 1.00372 1.21408 0.98739 1.00201 0.94399 1.21317 0.98770 0.96207 0.98000 1.21191 0.95145 0.99593 0.99670 0.91441 0.90362 0.94102 0.95405 0.92392 0.93790 0.91499 0.83765 0.92458 0.93195 0.99780 0.97948 0.92780 0.86562 0.84448 0.83799 0.84205 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.16 71.98 0.66 -3.27 16 2 C 0.08 2.23 3.24 44.92 0.15 2.37 16 3 C -0.12 -3.15 9.15 71.98 0.66 -2.49 16 4 N -0.68 -22.94 5.63 -473.31 -2.67 -25.60 16 5 C 0.13 4.81 2.24 44.17 0.10 4.91 16 6 H 0.03 1.31 7.12 -2.38 -0.02 1.29 16 7 C -0.09 -3.99 4.62 30.59 0.14 -3.85 16 8 C 0.03 1.65 4.82 29.85 0.14 1.80 16 9 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 11 C 0.00 0.24 5.46 84.66 0.46 0.71 16 12 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 13 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 C -0.07 -2.16 3.31 -19.87 -0.07 -2.23 16 18 C -0.10 -2.92 9.28 22.27 0.21 -2.71 16 19 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 20 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 21 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 22 C -0.14 -3.89 9.61 22.27 0.21 -3.67 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 26 H 0.03 0.90 7.33 -2.39 -0.02 0.88 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.20 6.81 -2.39 -0.02 1.18 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.34 12.99 6.08 -89.69 -0.55 12.45 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 34 H 0.00 0.13 6.49 -2.39 -0.02 0.11 16 35 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 36 H 0.12 3.56 7.89 -2.91 -0.02 3.54 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.12 3.15 8.00 -2.91 -0.02 3.13 16 Total: -1.00 -62.69 324.99 3.66 -59.03 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.44 Total: 23.63 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 3.57 Total: -47.51 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.38 Total: -81.68 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.69 3.66 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336685613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.905 kcal (2) G-P(sol) polarization free energy of solvation -62.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds