Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99800 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47172 * 34.99697 * 5 4 3 7 7 C 1.52995 * 109.47133 * 154.99741 * 5 4 3 8 8 C 1.53007 * 109.47093 * 294.99946 * 7 5 4 9 9 C 1.50699 * 109.46651 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00270 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00014 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00518 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99763 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47314 * 89.99680 * 13 11 9 15 15 H 1.48503 * 109.47259 * 210.00206 * 13 11 9 16 16 H 1.48504 * 109.46802 * 329.99818 * 13 11 9 17 17 C 1.50696 * 109.47140 * 275.00279 * 5 4 3 18 18 C 1.38235 * 119.99495 * 319.72296 * 17 5 4 19 19 C 1.38242 * 119.99818 * 179.79100 * 18 17 5 20 20 C 1.38234 * 119.99864 * 0.44324 * 19 18 17 21 21 C 1.38237 * 119.99707 * 359.81020 * 20 19 18 22 22 C 1.38227 * 120.00412 * 359.97438 * 21 20 19 23 23 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.00898 * 110.99915 * 303.94815 * 4 3 2 31 31 H 1.09001 * 109.47077 * 55.00046 * 7 5 4 32 32 H 1.09003 * 109.46883 * 175.00384 * 7 5 4 33 33 H 1.08993 * 109.47402 * 299.99690 * 8 7 5 34 34 H 1.08993 * 109.46938 * 60.00418 * 8 7 5 35 35 H 0.97005 * 120.00212 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.00215 * 0.02562 * 18 17 5 37 37 H 1.07999 * 120.00095 * 180.27110 * 19 18 17 38 38 H 1.07995 * 120.00279 * 179.83880 * 20 19 18 39 39 H 1.08006 * 119.99445 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.00402 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3793 3.4553 0.5888 7 6 5.4383 2.8221 0.6103 8 6 5.3555 2.4210 2.0845 9 6 6.7374 2.4295 2.6857 10 1 7.5893 2.6950 2.0773 11 6 6.9141 2.0985 4.0124 12 7 8.1200 2.1055 4.5370 13 14 5.4405 1.6387 5.0645 14 1 5.2143 0.1732 4.9861 15 1 5.6995 2.0249 6.4749 16 1 4.2364 2.3527 4.5689 17 6 4.1002 3.3266 -1.4156 18 6 4.5166 2.4907 -2.4348 19 6 4.5721 2.9595 -3.7341 20 6 4.2199 4.2669 -4.0128 21 6 3.8085 5.1042 -2.9927 22 6 3.7488 4.6342 -1.6942 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 3.8701 0.9167 0.7823 31 1 6.0710 2.1135 0.0759 32 1 5.8640 3.8223 0.5293 33 1 4.7229 3.1296 2.6189 34 1 4.9298 1.4209 2.1655 35 1 8.2442 1.8729 5.4705 36 1 4.7950 1.4703 -2.2166 37 1 4.8932 2.3052 -4.5311 38 1 4.2657 4.6339 -5.0274 39 1 3.5330 6.1256 -3.2105 40 1 3.4278 5.2885 -0.8972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336690792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = 0.059201 kcal Electronic energy + Delta-G solvation = -17732.289769 eV Core-core repulsion = 15124.726900 eV Total energy + Delta-G solvation = -2607.562869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31710 -36.93593 -34.41956 -32.81024 -30.76059 -30.65476 -30.44322 -26.89630 -24.52637 -23.32303 -22.29206 -21.20486 -20.75993 -19.56779 -16.98309 -16.45487 -15.71436 -15.34988 -14.95703 -14.62039 -14.19712 -13.94840 -13.42533 -13.20064 -13.11950 -12.73894 -12.50925 -12.46575 -12.28402 -11.82927 -11.55990 -11.20880 -11.04313 -10.97555 -10.79703 -10.68903 -10.59159 -9.97220 -9.81012 -9.68212 -9.23413 -8.68355 -8.56855 -8.37935 -8.17683 -6.06432 -4.04577 1.58970 1.65758 3.27073 3.35074 3.36980 4.02025 4.40023 4.42176 4.98863 5.04779 5.11512 5.15329 5.19631 5.26995 5.37317 5.42420 5.55624 5.67984 5.74042 5.75210 5.81851 5.84785 5.91189 5.99868 6.16435 6.22741 6.26633 6.28046 6.39361 6.55857 6.69640 6.74639 6.79568 6.89265 7.21896 7.25316 7.28055 7.48111 7.71588 7.77299 8.51910 8.99203 9.55678 11.07086 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006544 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.291279 B = 4277.407479 C = 5560.325052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.059 3.941 4 N -0.686 5.686 5 C 0.121 3.879 6 H 0.048 0.952 7 C -0.100 4.100 8 C -0.013 4.013 9 C -0.519 4.519 10 H 0.073 0.927 11 C 0.067 3.933 12 N -0.902 5.902 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.061 4.061 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.351 0.649 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 0.478 -13.402 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.070 4.070 4 N -0.319 5.319 5 C 0.011 3.989 6 H 0.066 0.934 7 C -0.138 4.138 8 C -0.051 4.051 9 C -0.557 4.557 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.706 3.294 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.192 1.192 17 C -0.062 4.062 18 C -0.105 4.105 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.140 4.140 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.232 0.366 -13.892 19.188 hybrid contribution -0.837 0.089 1.590 1.799 sum -14.068 0.455 -12.302 18.694 Atomic orbital electron populations 1.21719 0.95929 1.01452 1.01623 1.21506 0.95239 0.96808 1.02583 1.21994 0.88425 0.96501 1.00079 1.60475 1.06635 1.13885 1.50947 1.20607 0.97938 0.88978 0.91345 0.93440 1.21657 0.92627 1.01991 0.97484 1.19612 0.98133 0.95404 0.91918 1.21101 0.92439 1.46342 0.95781 0.90934 1.25029 0.95532 0.94956 0.97887 1.69911 1.21188 1.49217 1.13809 0.86802 0.83734 0.79121 0.79735 1.20219 1.21366 1.19241 1.19994 0.97271 0.93298 0.95642 1.21055 0.97558 1.00221 0.91656 1.21160 1.00886 0.95776 0.96865 1.21045 1.00886 0.94354 0.98738 1.21009 1.01016 0.99367 0.93035 1.21045 1.00864 0.95540 0.96558 0.92945 0.92835 0.92761 0.91221 0.92079 0.91503 0.95597 0.82683 0.91602 0.91911 0.96899 0.97197 0.92723 0.85271 0.86615 0.86819 0.86669 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.45 6.19 -26.73 -0.17 -1.61 16 3 C 0.06 0.80 5.48 -3.82 -0.02 0.78 16 4 N -0.69 -10.59 5.56 -107.95 -0.60 -11.19 16 5 C 0.12 2.00 2.24 -68.87 -0.15 1.84 16 6 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 7 C -0.10 -1.97 4.72 -26.73 -0.13 -2.10 16 8 C -0.01 -0.31 3.87 -27.88 -0.11 -0.42 16 9 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 10 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 13 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 17 C -0.06 -0.94 4.71 -104.63 -0.49 -1.43 16 18 C -0.09 -1.27 9.32 -39.58 -0.37 -1.64 16 19 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 20 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 21 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 22 C -0.12 -1.72 9.67 -39.59 -0.38 -2.10 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 30 H 0.35 5.83 6.47 -39.29 -0.25 5.57 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 34 H 0.01 0.22 5.85 -51.93 -0.30 -0.08 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 1.92 7.73 -52.49 -0.41 1.51 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.12 1.52 8.04 -52.49 -0.42 1.09 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -29.94 325.61 -9.47 -39.41 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.80 Total: 4.05 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -3.07 Total: -27.01 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.17 Total: -38.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.94 -9.47 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336690792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.466 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds