Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99800 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47172 * 34.99697 * 5 4 3 7 7 C 1.52995 * 109.47133 * 154.99741 * 5 4 3 8 8 C 1.53007 * 109.47093 * 294.99946 * 7 5 4 9 9 C 1.50699 * 109.46651 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00270 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00014 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00518 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99763 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47314 * 89.99680 * 13 11 9 15 15 H 1.48503 * 109.47259 * 210.00206 * 13 11 9 16 16 H 1.48504 * 109.46802 * 329.99818 * 13 11 9 17 17 C 1.50696 * 109.47140 * 275.00279 * 5 4 3 18 18 C 1.38235 * 119.99495 * 319.72296 * 17 5 4 19 19 C 1.38242 * 119.99818 * 179.79100 * 18 17 5 20 20 C 1.38234 * 119.99864 * 0.44324 * 19 18 17 21 21 C 1.38237 * 119.99707 * 359.81020 * 20 19 18 22 22 C 1.38227 * 120.00412 * 359.97438 * 21 20 19 23 23 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.00898 * 110.99915 * 303.94815 * 4 3 2 31 31 H 1.09001 * 109.47077 * 55.00046 * 7 5 4 32 32 H 1.09003 * 109.46883 * 175.00384 * 7 5 4 33 33 H 1.08993 * 109.47402 * 299.99690 * 8 7 5 34 34 H 1.08993 * 109.46938 * 60.00418 * 8 7 5 35 35 H 0.97005 * 120.00212 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.00215 * 0.02562 * 18 17 5 37 37 H 1.07999 * 120.00095 * 180.27110 * 19 18 17 38 38 H 1.07995 * 120.00279 * 179.83880 * 20 19 18 39 39 H 1.08006 * 119.99445 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.00402 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3793 3.4553 0.5888 7 6 5.4383 2.8221 0.6103 8 6 5.3555 2.4210 2.0845 9 6 6.7374 2.4295 2.6857 10 1 7.5893 2.6950 2.0773 11 6 6.9141 2.0985 4.0124 12 7 8.1200 2.1055 4.5370 13 14 5.4405 1.6387 5.0645 14 1 5.2143 0.1732 4.9861 15 1 5.6995 2.0249 6.4749 16 1 4.2364 2.3527 4.5689 17 6 4.1002 3.3266 -1.4156 18 6 4.5166 2.4907 -2.4348 19 6 4.5721 2.9595 -3.7341 20 6 4.2199 4.2669 -4.0128 21 6 3.8085 5.1042 -2.9927 22 6 3.7488 4.6342 -1.6942 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 3.8701 0.9167 0.7823 31 1 6.0710 2.1135 0.0759 32 1 5.8640 3.8223 0.5293 33 1 4.7229 3.1296 2.6189 34 1 4.9298 1.4209 2.1655 35 1 8.2442 1.8729 5.4705 36 1 4.7950 1.4703 -2.2166 37 1 4.8932 2.3052 -4.5311 38 1 4.2657 4.6339 -5.0274 39 1 3.5330 6.1256 -3.2105 40 1 3.4278 5.2885 -0.8972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336690792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = -16.450799 kcal Electronic energy + Delta-G solvation = -17733.005696 eV Core-core repulsion = 15124.726900 eV Total energy + Delta-G solvation = -2608.278796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43514 -38.13056 -35.83087 -34.61633 -32.40598 -31.76143 -31.47368 -28.46671 -25.81320 -24.71551 -23.34033 -22.41227 -22.11456 -20.97344 -19.01447 -17.60164 -16.88796 -16.60871 -16.34318 -15.92217 -15.63477 -15.22967 -14.85037 -14.45969 -14.39681 -14.13081 -13.89864 -13.59156 -13.43852 -13.17715 -13.02299 -12.64985 -12.36901 -12.25225 -11.98680 -11.82231 -11.71015 -11.69316 -11.49528 -11.35547 -11.31565 -10.78017 -9.71221 -9.49266 -9.39758 -8.30932 -6.35402 0.54448 0.62517 1.33397 1.35424 1.46531 2.33693 2.96425 3.04013 3.22016 3.86988 4.05596 4.09499 4.21461 4.25673 4.28965 4.38136 4.40342 4.50220 4.59104 4.66931 4.74223 4.77898 4.86423 4.88651 4.94382 4.97994 5.18735 5.21313 5.28357 5.30990 5.39064 5.44610 5.50626 5.62824 5.67042 5.72078 5.80361 6.19724 6.23741 6.27185 6.44406 6.72491 7.28931 8.86142 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006544 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.291279 B = 4277.407479 C = 5560.325052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.062 3.938 4 N -0.687 5.687 5 C 0.133 3.867 6 H 0.046 0.954 7 C -0.089 4.089 8 C -0.006 4.006 9 C -0.532 4.532 10 H 0.029 0.971 11 C 0.005 3.995 12 N -0.951 5.951 13 Si 0.951 3.049 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.249 1.249 17 C -0.081 4.081 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.135 4.135 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.344 0.656 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 0.507 -14.485 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.320 5.320 5 C 0.023 3.977 6 H 0.064 0.936 7 C -0.127 4.127 8 C -0.043 4.043 9 C -0.570 4.570 10 H 0.047 0.953 11 C -0.191 4.191 12 N -0.592 5.592 13 Si 0.774 3.226 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.173 1.173 17 C -0.082 4.082 18 C -0.120 4.120 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.164 0.836 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.805 0.400 -15.002 21.795 hybrid contribution 0.058 0.127 1.822 1.827 sum -15.747 0.527 -13.180 20.542 Atomic orbital electron populations 1.21691 0.94315 1.02363 1.01951 1.21480 0.96585 0.95376 1.02314 1.22031 0.86958 0.97765 0.99920 1.60519 1.08010 1.13029 1.50409 1.20371 0.95362 0.89685 0.92233 0.93639 1.21457 0.94961 1.00726 0.95530 1.19513 0.94979 0.96166 0.93679 1.21444 0.93706 1.45963 0.95896 0.95266 1.26021 0.98882 0.94806 0.99439 1.70071 1.23931 1.50716 1.14469 0.85646 0.79912 0.79583 0.77419 1.18742 1.21037 1.17251 1.19924 0.99164 0.94212 0.94884 1.21090 0.98391 0.99930 0.92608 1.21444 1.00334 0.96685 0.96567 1.21441 0.99332 0.93820 1.00150 1.21353 1.00100 1.00706 0.92344 1.21231 1.01176 0.95121 0.97774 0.92838 0.92291 0.91585 0.91347 0.92497 0.91427 0.95853 0.83582 0.92809 0.93124 0.96686 0.95855 0.92470 0.86215 0.84504 0.83826 0.84084 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.12 -2.61 6.19 30.60 0.19 -2.42 16 3 C 0.06 1.60 5.48 86.31 0.47 2.07 16 4 N -0.69 -20.82 5.56 -495.43 -2.75 -23.58 16 5 C 0.13 4.37 2.24 44.17 0.10 4.47 16 6 H 0.05 1.50 7.66 -2.38 -0.02 1.48 16 7 C -0.09 -3.59 4.72 30.60 0.14 -3.44 16 8 C -0.01 -0.28 3.87 29.85 0.12 -0.16 16 9 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 10 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 11 C 0.01 0.31 5.47 84.66 0.46 0.77 16 12 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 13 Si 0.95 44.25 27.47 68.60 1.88 46.14 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 17 C -0.08 -2.44 4.71 -19.87 -0.09 -2.54 16 18 C -0.10 -2.92 9.32 22.27 0.21 -2.71 16 19 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 20 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 21 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 22 C -0.13 -3.62 9.67 22.27 0.22 -3.40 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 29 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 30 H 0.34 11.18 6.47 -89.70 -0.58 10.60 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 34 H 0.02 1.03 5.85 -2.39 -0.01 1.02 16 35 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 36 H 0.12 3.57 7.73 -2.91 -0.02 3.55 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.12 3.04 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -65.67 325.61 3.23 -62.44 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.35 Total: 23.16 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 3.45 Total: -48.15 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.46 Total: -83.59 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Total: -65.67 3.23 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336690792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.992 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds