Wall clock time and date at job start Mon Mar 30 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 N 1.46900 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.46910 * 111.00108 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46699 * 325.00745 * 5 4 3 7 7 C 1.52992 * 109.47127 * 205.00462 * 5 4 3 8 8 C 1.52997 * 109.47482 * 65.00091 * 7 5 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.50700 * 109.46728 * 84.99872 * 5 4 3 18 18 C 1.38243 * 119.99881 * 39.73246 * 17 5 4 19 19 C 1.38236 * 119.99546 * 179.78181 * 18 17 5 20 20 C 1.38230 * 120.00068 * 0.44148 * 19 18 17 21 21 C 1.38228 * 120.00363 * 359.81337 * 20 19 18 22 22 C 1.38231 * 119.99932 * 359.97297 * 21 20 19 23 23 H 1.09005 * 109.46810 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47277 * 299.99165 * 1 2 3 25 25 H 1.08996 * 109.47803 * 59.99758 * 1 2 3 26 26 H 1.08998 * 109.47277 * 240.00835 * 2 1 3 27 27 H 1.08996 * 109.47803 * 120.00242 * 2 1 3 28 28 H 1.09001 * 109.46950 * 60.00605 * 3 2 1 29 29 H 1.08996 * 109.47642 * 300.00556 * 3 2 1 30 30 H 1.00891 * 111.00565 * 303.95430 * 4 3 2 31 31 H 1.09002 * 109.47103 * 304.99844 * 7 5 4 32 32 H 1.08998 * 109.46862 * 185.00656 * 7 5 4 33 33 H 1.09002 * 109.47153 * 59.99783 * 8 7 5 34 34 H 1.09001 * 109.46832 * 299.99974 * 8 7 5 35 35 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 36 36 H 1.07998 * 119.99681 * 359.97438 * 18 17 5 37 37 H 1.08001 * 119.99400 * 180.27071 * 19 18 17 38 38 H 1.08007 * 119.99792 * 179.83387 * 20 19 18 39 39 H 1.07998 * 120.00222 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.00023 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3793 3.4553 -0.5887 7 6 5.4382 2.8222 -0.6103 8 6 5.3555 2.4211 -2.0845 9 6 6.7374 2.4297 -2.6857 10 1 7.5894 2.6943 -2.0772 11 6 6.9140 2.0986 -4.0125 12 7 5.8764 1.7759 -4.7534 13 14 8.6269 2.1086 -4.7575 14 1 9.4891 1.1434 -4.0292 15 1 8.5466 1.7194 -6.1884 16 1 9.2067 3.4713 -4.6475 17 6 4.1003 3.3266 1.4157 18 6 4.5059 2.4873 2.4366 19 6 4.5697 2.9587 3.7345 20 6 4.2193 4.2666 4.0129 21 6 3.8086 5.1042 2.9929 22 6 3.7490 4.6342 1.6943 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6765 1.9564 -0.8899 30 1 3.8709 0.9164 0.7804 31 1 6.0710 2.1136 -0.0759 32 1 5.8640 3.8223 -0.5291 33 1 4.7228 3.1297 -2.6189 34 1 4.9298 1.4209 -2.1655 35 1 6.0006 1.5434 -5.6869 36 1 4.7758 1.4644 2.2196 37 1 4.8908 2.3043 4.5315 38 1 4.2666 4.6341 5.0274 39 1 3.5352 6.1261 3.2104 40 1 3.4285 5.2888 0.8973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336690801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:11 Heat of formation + Delta-G solvation = -17.054228 kcal Electronic energy + Delta-G solvation = -17658.978954 eV Core-core repulsion = 15050.673991 eV Total energy + Delta-G solvation = -2608.304963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61821 -37.95863 -35.80482 -34.60569 -32.21613 -31.81654 -31.30857 -28.18066 -25.94546 -24.76152 -23.46647 -22.55856 -22.13863 -21.03853 -18.50618 -17.97055 -16.72928 -16.51223 -16.38694 -15.92028 -15.57865 -15.24120 -14.70182 -14.42548 -14.26528 -14.12583 -13.87811 -13.48619 -13.30813 -13.14868 -12.89507 -12.62757 -12.50820 -12.26641 -12.12873 -11.87277 -11.75734 -11.66804 -11.52559 -11.23459 -11.09786 -10.48649 -9.82137 -9.58793 -9.24539 -8.13513 -6.24294 0.45260 0.50290 1.39987 1.43525 1.51276 2.44006 2.88470 3.18556 3.26731 3.78633 3.94404 4.08913 4.15374 4.21349 4.29317 4.34062 4.48479 4.56746 4.64642 4.67480 4.71959 4.77806 4.91393 4.92889 5.04850 5.10990 5.16710 5.17931 5.32433 5.36224 5.40605 5.56553 5.59304 5.61625 5.66850 5.85894 6.00837 6.13004 6.23031 6.33631 6.57234 6.94224 7.43634 8.97670 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.005941 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.453253 B = 4712.222193 C = 6019.195022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.065 3.935 4 N -0.686 5.686 5 C 0.137 3.863 6 H 0.066 0.934 7 C -0.077 4.077 8 C 0.041 3.959 9 C -0.544 4.544 10 H 0.054 0.946 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.961 3.039 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.114 4.114 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.047 0.953 32 H 0.044 0.956 33 H -0.022 1.022 34 H 0.007 0.993 35 H 0.262 0.738 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 1.782 17.679 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.064 4.064 4 N -0.318 5.318 5 C 0.027 3.973 6 H 0.084 0.916 7 C -0.115 4.115 8 C 0.004 3.996 9 C -0.582 4.582 10 H 0.072 0.928 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.786 3.214 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.115 4.115 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.150 4.150 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.066 0.934 32 H 0.063 0.937 33 H -0.004 1.004 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.931 1.637 16.810 18.659 hybrid contribution 0.618 0.268 -0.136 0.687 sum -7.313 1.905 16.674 18.306 Atomic orbital electron populations 1.21684 0.94172 1.02414 1.01934 1.21465 0.96708 0.95363 1.02118 1.21964 0.87088 0.97744 0.99597 1.60583 1.07939 1.12993 1.50240 1.20466 0.96569 0.89300 0.90978 0.91610 1.21381 0.94225 0.99264 0.96629 1.18804 0.94469 0.95288 0.91022 1.21739 0.94806 1.45772 0.95924 0.92775 1.25939 1.00986 0.94913 0.97847 1.70114 1.31866 1.47614 1.07642 0.85565 0.79683 0.78927 0.77227 1.19257 1.20748 1.19305 1.20756 0.99377 0.95313 0.96104 1.21092 1.00522 0.99967 0.93290 1.21414 0.99345 0.96690 0.96269 1.21489 0.99123 0.93808 1.00254 1.21430 0.99338 1.00827 0.92284 1.21250 1.00852 0.95069 0.97852 0.91457 0.92079 0.93040 0.92786 0.91378 0.95004 0.92814 0.83716 0.93426 0.93722 1.00400 0.97502 0.92966 0.85966 0.83818 0.83439 0.83931 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.12 -3.01 6.19 30.59 0.19 -2.82 16 3 C 0.07 1.92 5.48 86.30 0.47 2.39 16 4 N -0.69 -23.50 5.69 -495.44 -2.82 -26.31 16 5 C 0.14 4.94 2.22 44.16 0.10 5.04 16 6 H 0.07 2.51 7.66 -2.39 -0.02 2.50 16 7 C -0.08 -3.38 4.81 30.59 0.15 -3.23 16 8 C 0.04 2.30 4.86 29.85 0.15 2.44 16 9 C -0.54 -32.50 9.11 25.60 0.23 -32.27 16 10 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.93 -58.86 13.29 21.45 0.28 -58.57 16 13 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C -0.11 -3.42 4.71 -19.86 -0.09 -3.51 16 18 C -0.13 -3.44 9.12 22.27 0.20 -3.24 16 19 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 20 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 21 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 22 C -0.13 -3.57 9.67 22.27 0.22 -3.36 16 23 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 29 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 30 H 0.34 10.48 6.34 -89.70 -0.57 9.91 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 34 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.12 3.09 6.50 -2.91 -0.02 3.07 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.12 3.15 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -68.24 329.22 3.37 -64.87 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.42 Total: 19.50 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 3.46 Total: -47.34 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.53 Total: -84.88 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.24 3.37 -64.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336690801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds