Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46792 * 2 1 4 4 C 1.53004 * 109.46866 * 240.00270 * 2 1 3 5 5 N 1.46902 * 109.47254 * 64.99738 * 4 2 1 6 6 C 1.46895 * 110.99792 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46821 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47075 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00162 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99751 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99729 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00286 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46941 * 89.99818 * 12 10 8 14 14 H 1.48494 * 109.46901 * 209.99882 * 12 10 8 15 15 H 1.48497 * 109.46885 * 330.00402 * 12 10 8 16 16 C 1.53001 * 109.47387 * 120.00516 * 2 1 3 17 17 C 1.50706 * 109.46589 * 294.99596 * 16 2 1 18 18 C 1.38237 * 119.99744 * 90.00605 * 17 16 2 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 270.01815 * 17 16 2 23 23 H 1.09006 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46806 * 299.99578 * 1 2 3 25 25 H 1.08998 * 109.47649 * 59.99907 * 1 2 3 26 26 H 1.09004 * 109.47122 * 184.99804 * 4 2 1 27 27 H 1.08997 * 109.47296 * 304.99756 * 4 2 1 28 28 H 1.00898 * 110.99752 * 303.95314 * 5 4 2 29 29 H 1.08999 * 109.47644 * 300.00286 * 6 5 4 30 30 H 1.09001 * 109.47068 * 60.00499 * 6 5 4 31 31 H 1.08996 * 109.47627 * 300.00146 * 7 6 5 32 32 H 1.09001 * 109.47430 * 60.00752 * 7 6 5 33 33 H 0.96998 * 119.99713 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.47218 * 175.00342 * 16 2 1 35 35 H 1.08993 * 109.47154 * 54.99775 * 16 2 1 36 36 H 1.08005 * 120.00088 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 40 40 H 1.07998 * 119.99975 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6512 0.0375 -2.4457 6 6 2.1256 -0.6265 -3.6672 7 6 1.7021 0.1910 -4.8892 8 6 2.1882 -0.4904 -6.1424 9 1 2.7432 -1.4143 -6.0741 10 6 1.9242 0.0657 -7.3762 11 7 2.3480 -0.5292 -8.4699 12 14 0.9648 1.6641 -7.4943 13 1 1.9072 2.8111 -7.4554 14 1 0.2038 1.6916 -8.7691 15 1 0.0207 1.7603 -6.3520 16 6 2.0401 -0.7214 1.2492 17 6 1.6414 0.0570 2.4765 18 6 0.4357 -0.2051 3.0998 19 6 0.0698 0.5092 4.2253 20 6 0.9101 1.4848 4.7282 21 6 2.1136 1.7503 4.1022 22 6 2.4813 1.0332 2.9790 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.1263 -0.7994 -1.2057 27 1 1.6054 -1.7197 -1.2953 28 1 0.6527 0.1793 -2.4753 29 1 3.2125 -0.7037 -3.6401 30 1 1.6919 -1.6245 -3.7301 31 1 0.6152 0.2678 -4.9161 32 1 2.1355 1.1892 -4.8266 33 1 2.1626 -0.1378 -9.3378 34 1 3.1264 -0.7995 1.2055 35 1 1.6055 -1.7198 1.2950 36 1 -0.2209 -0.9674 2.7068 37 1 -0.8724 0.3047 4.7119 38 1 0.6243 2.0426 5.6078 39 1 2.7681 2.5155 4.4925 40 1 3.4231 1.2384 2.4917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336738389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = -2.262921 kcal Electronic energy + Delta-G solvation = -16982.845915 eV Core-core repulsion = 14375.182352 eV Total energy + Delta-G solvation = -2607.663564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65097 -37.23309 -34.72248 -32.74238 -31.23918 -31.05914 -29.30530 -27.00694 -25.45559 -23.25632 -22.72207 -21.36274 -20.51064 -19.72826 -16.98939 -16.73285 -15.87790 -15.41193 -15.27156 -14.56715 -14.33435 -13.98604 -13.74005 -13.58079 -13.12034 -12.93073 -12.61590 -12.53637 -12.28037 -12.13872 -11.52907 -11.35893 -11.17432 -11.04696 -10.95008 -10.69090 -10.62785 -10.11502 -9.77447 -9.68048 -9.20972 -9.08828 -8.82049 -8.51988 -7.89901 -6.02917 -4.01127 1.18324 1.21791 3.34357 3.40931 3.46059 3.59760 4.47849 4.48619 4.64353 4.75104 4.83888 4.92425 4.95753 5.13113 5.19915 5.31555 5.31768 5.34323 5.56764 5.61262 5.72758 5.81486 5.83431 5.87257 5.96947 6.05527 6.21850 6.24131 6.27411 6.32672 6.33507 6.38518 6.52960 6.80300 6.83351 7.16261 7.41127 7.63781 7.78823 7.94168 8.55037 9.01271 9.59601 11.10469 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046973 B = 0.003251 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.940813 B = 8610.234610 C = 8762.321694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 H 0.080 0.920 4 C 0.063 3.937 5 N -0.695 5.695 6 C 0.073 3.927 7 C -0.010 4.010 8 C -0.521 4.521 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.905 5.905 12 Si 0.883 3.117 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.265 1.265 16 C -0.078 4.078 17 C -0.072 4.072 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.118 4.118 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.334 0.666 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.012 0.988 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 2.111 26.253 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.067 4.067 5 N -0.327 5.327 6 C -0.055 4.055 7 C -0.048 4.048 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.544 5.544 12 Si 0.711 3.289 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.190 1.190 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.136 4.136 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.152 0.848 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.020 2.539 26.077 26.374 hybrid contribution -1.079 0.065 -0.269 1.114 sum -4.099 2.604 25.808 26.261 Atomic orbital electron populations 1.21935 0.95458 1.01477 1.02062 1.21120 0.95891 1.00496 0.92717 0.90180 1.21966 1.00359 0.94446 0.89884 1.60621 1.19298 1.50625 1.02141 1.21946 0.99675 0.95340 0.88538 1.19547 0.96201 0.96195 0.92847 1.21085 1.35722 1.09921 0.89224 0.91130 1.25018 0.95423 0.97370 0.95681 1.69920 1.46770 1.39851 0.97818 0.86721 0.80691 0.84144 0.77378 1.20232 1.21514 1.18992 1.20685 1.01389 0.98183 0.91355 1.19925 0.94393 0.96584 0.96259 1.21086 0.96337 1.00199 0.95832 1.21137 0.99572 0.96571 0.96643 1.21116 0.94918 0.98508 1.00243 1.21144 0.96845 0.99622 0.96135 1.21104 0.99857 0.96091 0.96507 0.93075 0.92426 0.92204 0.91327 0.95751 0.84752 0.91802 0.96098 0.96926 0.96105 0.92743 0.90794 0.91035 0.86152 0.86315 0.86413 0.86249 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.53 37.16 0.32 -1.34 16 2 C -0.08 -0.96 2.59 -90.62 -0.23 -1.19 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.06 0.87 5.14 -3.82 -0.02 0.85 16 5 N -0.70 -11.90 6.50 -113.78 -0.74 -12.64 16 6 C 0.07 1.51 5.62 -3.83 -0.02 1.49 16 7 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 8 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 9 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 12 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 16 C -0.08 -0.76 4.84 -27.88 -0.13 -0.90 16 17 C -0.07 -0.71 4.71 -104.62 -0.49 -1.20 16 18 C -0.12 -1.09 7.96 -39.58 -0.32 -1.41 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 20 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.60 6.27 -51.93 -0.33 0.27 16 25 H 0.06 0.70 6.68 -51.93 -0.35 0.36 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.33 5.47 6.98 -39.29 -0.27 5.19 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 32 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.12 0.99 8.04 -52.48 -0.42 0.57 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -31.20 323.65 -9.58 -40.78 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.79 Total: 0.62 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -3.03 Total: -23.65 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.03 Total: -40.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.20 -9.58 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336738389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.515 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds