Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46792 * 2 1 4 4 C 1.53004 * 109.46866 * 240.00270 * 2 1 3 5 5 N 1.46902 * 109.47254 * 64.99738 * 4 2 1 6 6 C 1.46895 * 110.99792 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46821 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47075 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00162 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99751 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99729 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00286 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46941 * 89.99818 * 12 10 8 14 14 H 1.48494 * 109.46901 * 209.99882 * 12 10 8 15 15 H 1.48497 * 109.46885 * 330.00402 * 12 10 8 16 16 C 1.53001 * 109.47387 * 120.00516 * 2 1 3 17 17 C 1.50706 * 109.46589 * 294.99596 * 16 2 1 18 18 C 1.38237 * 119.99744 * 90.00605 * 17 16 2 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 270.01815 * 17 16 2 23 23 H 1.09006 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46806 * 299.99578 * 1 2 3 25 25 H 1.08998 * 109.47649 * 59.99907 * 1 2 3 26 26 H 1.09004 * 109.47122 * 184.99804 * 4 2 1 27 27 H 1.08997 * 109.47296 * 304.99756 * 4 2 1 28 28 H 1.00898 * 110.99752 * 303.95314 * 5 4 2 29 29 H 1.08999 * 109.47644 * 300.00286 * 6 5 4 30 30 H 1.09001 * 109.47068 * 60.00499 * 6 5 4 31 31 H 1.08996 * 109.47627 * 300.00146 * 7 6 5 32 32 H 1.09001 * 109.47430 * 60.00752 * 7 6 5 33 33 H 0.96998 * 119.99713 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.47218 * 175.00342 * 16 2 1 35 35 H 1.08993 * 109.47154 * 54.99775 * 16 2 1 36 36 H 1.08005 * 120.00088 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 40 40 H 1.07998 * 119.99975 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6512 0.0375 -2.4457 6 6 2.1256 -0.6265 -3.6672 7 6 1.7021 0.1910 -4.8892 8 6 2.1882 -0.4904 -6.1424 9 1 2.7432 -1.4143 -6.0741 10 6 1.9242 0.0657 -7.3762 11 7 2.3480 -0.5292 -8.4699 12 14 0.9648 1.6641 -7.4943 13 1 1.9072 2.8111 -7.4554 14 1 0.2038 1.6916 -8.7691 15 1 0.0207 1.7603 -6.3520 16 6 2.0401 -0.7214 1.2492 17 6 1.6414 0.0570 2.4765 18 6 0.4357 -0.2051 3.0998 19 6 0.0698 0.5092 4.2253 20 6 0.9101 1.4848 4.7282 21 6 2.1136 1.7503 4.1022 22 6 2.4813 1.0332 2.9790 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.1263 -0.7994 -1.2057 27 1 1.6054 -1.7197 -1.2953 28 1 0.6527 0.1793 -2.4753 29 1 3.2125 -0.7037 -3.6401 30 1 1.6919 -1.6245 -3.7301 31 1 0.6152 0.2678 -4.9161 32 1 2.1355 1.1892 -4.8266 33 1 2.1626 -0.1378 -9.3378 34 1 3.1264 -0.7995 1.2055 35 1 1.6055 -1.7198 1.2950 36 1 -0.2209 -0.9674 2.7068 37 1 -0.8724 0.3047 4.7119 38 1 0.6243 2.0426 5.6078 39 1 2.7681 2.5155 4.4925 40 1 3.4231 1.2384 2.4917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336738389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = -20.197434 kcal Electronic energy + Delta-G solvation = -16983.623614 eV Core-core repulsion = 14375.182352 eV Total energy + Delta-G solvation = -2608.441263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35066 -38.37479 -36.12654 -34.64939 -32.46079 -31.74581 -30.80597 -27.84112 -26.92841 -24.77282 -23.39063 -22.30705 -22.16433 -20.73718 -18.96121 -17.67866 -17.04271 -16.37973 -16.21198 -16.02605 -15.64369 -15.19610 -14.98673 -14.70074 -14.28498 -14.22370 -13.98010 -13.55999 -13.35176 -13.16293 -12.95247 -12.85224 -12.37954 -12.07513 -11.95152 -11.83986 -11.78636 -11.66448 -11.51832 -11.42034 -11.25793 -10.77714 -9.75310 -9.51762 -9.30656 -8.30750 -6.35488 0.50859 0.55448 1.37424 1.38425 1.51363 2.36417 2.91179 3.04765 3.33335 3.84373 3.92618 4.12686 4.19461 4.22803 4.26052 4.36804 4.47473 4.49076 4.58847 4.66235 4.71485 4.83295 4.84934 4.91615 4.95751 5.02877 5.06758 5.22814 5.24453 5.27548 5.40188 5.44872 5.48884 5.62514 5.63821 5.68104 5.81005 6.15176 6.19609 6.25426 6.54448 6.73336 7.29513 8.85977 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046973 B = 0.003251 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.940813 B = 8610.234610 C = 8762.321694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 H 0.068 0.932 4 C 0.063 3.937 5 N -0.696 5.696 6 C 0.086 3.914 7 C -0.004 4.004 8 C -0.535 4.535 9 H 0.032 0.968 10 C 0.004 3.996 11 N -0.951 5.951 12 Si 0.956 3.044 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.247 1.247 16 C -0.072 4.072 17 C -0.085 4.085 18 C -0.126 4.126 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.133 4.133 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.341 0.659 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 3.404 28.169 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 H 0.086 0.914 4 C -0.066 4.066 5 N -0.328 5.328 6 C -0.043 4.043 7 C -0.042 4.042 8 C -0.574 4.574 9 H 0.050 0.950 10 C -0.192 4.192 11 N -0.591 5.591 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.170 1.170 16 C -0.110 4.110 17 C -0.085 4.085 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.160 0.840 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.318 3.826 28.023 28.611 hybrid contribution -0.625 -0.407 -0.817 1.107 sum -4.942 3.418 27.206 27.862 Atomic orbital electron populations 1.21905 0.94856 1.01947 1.01902 1.20990 0.96286 0.99637 0.92271 0.91352 1.22044 1.00457 0.94667 0.89402 1.60534 1.19811 1.50723 1.01718 1.21625 0.99141 0.94651 0.88898 1.19438 0.96262 0.96118 0.92399 1.21422 1.35363 1.09006 0.91580 0.95006 1.26024 0.96577 1.01521 0.95117 1.70068 1.48430 1.42016 0.98634 0.85577 0.79451 0.78966 0.78127 1.19272 1.20846 1.17035 1.20604 1.01543 0.98281 0.90531 1.19979 0.94939 0.97014 0.96533 1.21275 0.96317 1.00612 0.96193 1.21438 1.00393 0.96341 0.96488 1.21439 0.94676 0.98488 1.00779 1.21418 0.97412 0.99902 0.95952 1.21293 1.00239 0.96465 0.97118 0.92299 0.91810 0.93087 0.91458 0.95193 0.84027 0.92654 0.96593 0.96261 0.96073 0.92401 0.90567 0.90311 0.85273 0.84466 0.84432 0.84687 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.53 71.98 0.61 -2.36 16 2 C -0.07 -1.56 2.59 -10.79 -0.03 -1.59 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.06 1.66 5.14 86.30 0.44 2.11 16 5 N -0.70 -22.89 6.50 -513.89 -3.34 -26.23 16 6 C 0.09 3.51 5.62 86.30 0.49 4.00 16 7 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 8 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 9 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 10 C 0.00 0.27 5.47 84.66 0.46 0.73 16 11 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 12 Si 0.96 45.23 27.47 68.60 1.88 47.11 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.25 -10.87 6.54 99.48 0.65 -10.21 16 16 C -0.07 -1.29 4.84 29.85 0.14 -1.15 16 17 C -0.08 -1.56 4.71 -19.86 -0.09 -1.65 16 18 C -0.13 -2.13 7.96 22.27 0.18 -1.95 16 19 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 20 C -0.14 -2.04 10.05 22.27 0.22 -1.81 16 21 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 22 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 23 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 1.20 6.27 -2.39 -0.01 1.19 16 25 H 0.05 1.10 6.68 -2.39 -0.02 1.09 16 26 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.34 10.54 6.98 -89.70 -0.63 9.91 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 32 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.13 1.86 8.04 -2.91 -0.02 1.84 16 37 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -66.79 323.65 2.62 -64.18 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.31 Total: 16.19 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 3.47 Total: -41.00 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -3.04 Total: -86.48 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -66.79 2.62 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336738389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.978 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds