Wall clock time and date at job start Mon Mar 30 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46930 * 2 1 4 4 C 1.50693 * 109.47173 * 120.00162 * 2 1 3 5 5 C 1.38126 * 120.03901 * 299.99502 * 4 2 1 6 6 C 1.38264 * 120.07351 * 179.72421 * 5 4 2 7 7 C 1.38310 * 120.15272 * 0.30282 * 6 5 4 8 8 C 1.38077 * 120.07177 * 359.97438 * 7 6 5 9 9 C 1.38898 * 120.04054 * 120.27588 * 4 2 1 10 10 N 1.39675 * 120.07050 * 359.97438 * 9 4 2 11 11 C 1.46901 * 110.99984 * 116.29756 * 10 9 4 12 12 C 1.46898 * 110.99874 * 240.25469 * 10 9 4 13 13 C 1.53002 * 109.46958 * 170.00265 * 12 10 9 14 14 C 1.50698 * 109.47186 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99851 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00401 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00191 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00457 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46672 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47510 * 119.99858 * 18 16 14 21 21 H 1.48499 * 109.47449 * 240.00136 * 18 16 14 22 22 H 1.09007 * 109.46639 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46391 * 299.99368 * 1 2 3 24 24 H 1.08990 * 109.47379 * 59.99978 * 1 2 3 25 25 H 1.09001 * 109.47216 * 240.00230 * 2 1 3 26 26 H 1.09003 * 109.47408 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47199 * 300.00356 * 3 2 1 28 28 H 1.09001 * 109.47438 * 60.00367 * 3 2 1 29 29 H 1.08002 * 119.96463 * 0.02562 * 5 4 2 30 30 H 1.08005 * 119.92243 * 180.27759 * 6 5 4 31 31 H 1.07997 * 119.96327 * 179.97438 * 7 6 5 32 32 H 1.08007 * 120.03506 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47185 * 60.00158 * 11 10 9 34 34 H 1.08997 * 109.47211 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47567 * 300.00175 * 11 10 9 36 36 H 1.09004 * 109.46933 * 289.99446 * 12 10 9 37 37 H 1.08997 * 109.47407 * 50.00004 * 12 10 9 38 38 H 1.08996 * 109.46951 * 299.99903 * 13 12 10 39 39 H 1.09002 * 109.47372 * 60.00120 * 13 12 10 40 40 H 0.96993 * 120.00779 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6993 -0.2392 2.4853 6 6 2.1551 -0.8937 3.6147 7 6 2.9508 -2.0183 3.4923 8 6 3.2923 -2.4914 2.2408 9 6 2.8357 -1.8364 1.1039 10 7 3.1789 -2.3125 -0.1636 11 6 4.6289 -2.2274 -0.3831 12 6 2.6967 -3.6864 -0.3582 13 6 2.8666 -4.0834 -1.8260 14 6 2.3725 -5.4931 -2.0255 15 1 1.9772 -6.0502 -1.1890 16 6 2.4250 -6.0715 -3.2759 17 7 2.9067 -5.3933 -4.2945 18 14 1.8119 -7.8186 -3.5234 19 1 1.3231 -8.3595 -2.2296 20 1 0.7031 -7.8189 -4.5112 21 1 2.9226 -8.6665 -4.0259 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.0781 0.6387 2.5845 30 1 1.8894 -0.5258 4.5948 31 1 3.3055 -2.5270 4.3765 32 1 3.9134 -3.3699 2.1459 33 1 5.1457 -2.8262 0.3669 34 1 4.8686 -2.6048 -1.3772 35 1 4.9484 -1.1885 -0.3018 36 1 3.2719 -4.3659 0.2709 37 1 1.6428 -3.7436 -0.0859 38 1 2.2915 -3.4040 -2.4550 39 1 3.9205 -4.0263 -2.0982 40 1 2.9434 -5.8000 -5.1743 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344266658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:14 Heat of formation + Delta-G solvation = -2.564924 kcal Electronic energy + Delta-G solvation = -18108.234540 eV Core-core repulsion = 15500.557880 eV Total energy + Delta-G solvation = -2607.676660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08592 -37.97033 -36.14291 -35.17820 -32.10636 -30.75513 -30.02939 -27.92432 -27.53019 -25.79499 -24.34009 -22.90338 -21.34361 -20.75221 -18.75435 -17.68682 -16.92358 -16.55239 -16.17076 -15.88946 -15.39877 -15.02250 -14.77344 -14.53914 -14.29484 -14.15265 -13.88167 -13.27900 -13.16901 -13.01513 -12.89974 -12.82563 -12.68987 -12.55850 -12.32939 -11.96765 -11.90788 -11.59344 -11.50434 -11.31731 -11.27372 -10.56214 -9.67301 -9.41426 -9.32091 -8.21620 -6.33076 0.43097 0.51521 1.38929 1.39355 1.52646 2.38827 2.85379 3.02344 3.11736 3.87126 3.98197 4.17585 4.22035 4.33710 4.35053 4.42477 4.45938 4.54987 4.63050 4.66903 4.75701 4.86182 4.89172 4.92099 4.99218 5.02415 5.03892 5.20963 5.29155 5.42252 5.44338 5.47649 5.58430 5.62375 5.64478 5.75135 5.85009 5.99937 6.04268 6.26644 6.61574 6.83017 7.36004 8.90631 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.005475 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.057611 B = 5112.912079 C = 5492.042213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.131 4.131 4 C -0.064 4.064 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.163 4.163 9 C 0.070 3.930 10 N -0.513 5.513 11 C 0.036 3.964 12 C 0.091 3.909 13 C 0.039 3.961 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.033 0.967 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.022 0.978 37 H 0.051 0.949 38 H -0.007 1.007 39 H -0.001 1.001 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 12.133 14.717 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 C -0.188 4.188 4 C -0.064 4.064 5 C -0.131 4.131 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.183 4.183 9 C -0.023 4.023 10 N -0.234 5.234 11 C -0.110 4.110 12 C -0.035 4.035 13 C 0.002 3.998 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.012 0.988 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.783 12.414 14.166 18.920 hybrid contribution 0.406 -1.739 -0.181 1.795 sum -1.378 10.674 13.985 17.647 Atomic orbital electron populations 1.21778 0.93955 1.00947 1.02552 1.20060 0.96043 0.96278 0.95656 1.21756 1.00457 0.94096 1.02536 1.19970 0.96221 0.94303 0.95954 1.21202 1.00284 1.00698 0.90963 1.21467 0.97503 0.95375 0.99599 1.21252 0.98740 0.97313 0.96615 1.21752 1.01905 1.00579 0.94085 1.19036 0.98902 0.96213 0.88191 1.59598 1.14803 1.22845 1.26119 1.22354 0.85984 1.01680 1.01018 1.21962 0.98051 0.85699 0.97831 1.18909 0.95417 0.94565 0.90949 1.21600 1.41797 1.00023 0.94910 0.92539 1.25920 0.95289 1.02526 0.95628 1.70104 1.46940 1.39089 1.00837 0.85397 0.78150 0.79041 0.78443 1.18779 1.20213 1.20160 0.94746 0.90960 0.91860 0.91499 0.93668 0.91878 0.91152 0.83591 0.83035 0.84212 0.87370 0.95264 0.92114 0.90520 0.95947 0.93048 0.98833 0.98223 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.01 71.98 0.65 -2.71 16 2 C -0.06 -1.73 3.05 -11.54 -0.04 -1.76 16 3 C -0.13 -2.89 9.01 71.98 0.65 -2.24 16 4 C -0.06 -1.84 4.80 -19.73 -0.09 -1.94 16 5 C -0.11 -2.56 8.71 22.25 0.19 -2.37 16 6 C -0.12 -2.51 10.04 22.29 0.22 -2.29 16 7 C -0.12 -2.87 10.04 22.25 0.22 -2.65 16 8 C -0.16 -4.96 8.66 22.40 0.19 -4.76 16 9 C 0.07 2.37 4.66 38.21 0.18 2.54 16 10 N -0.51 -19.97 3.40 -720.08 -2.45 -22.42 16 11 C 0.04 1.30 9.19 127.69 1.17 2.47 16 12 C 0.09 4.11 4.48 86.30 0.39 4.49 16 13 C 0.04 2.14 4.90 29.85 0.15 2.29 16 14 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 18 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.07 1.43 7.39 -2.39 -0.02 1.41 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 2.37 6.90 -2.39 -0.02 2.35 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.24 7.39 -2.39 -0.02 1.23 16 29 H 0.15 2.48 7.10 -2.91 -0.02 2.46 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.11 3.38 7.14 -2.91 -0.02 3.36 16 33 H 0.03 0.98 7.34 -2.39 -0.02 0.96 16 34 H 0.06 2.42 6.30 -2.39 -0.02 2.40 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.02 1.00 7.47 -2.38 -0.02 0.98 16 37 H 0.05 2.38 8.06 -2.39 -0.02 2.36 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.00 -0.03 6.47 -2.39 -0.02 -0.04 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.00 321.23 5.43 -60.57 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.99 Total: 11.76 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 4.58 Total: -39.83 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.16 Total: -79.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.00 5.43 -60.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344266658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.009 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds