Wall clock time and date at job start Mon Mar 30 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47173 * 2 1 4 4 C 1.53001 * 109.47371 * 240.00154 * 2 1 3 5 5 C 1.53002 * 109.47573 * 119.99714 * 2 1 3 6 6 H 1.08996 * 109.47275 * 300.00671 * 5 2 1 7 7 C 1.53007 * 109.46546 * 60.00509 * 5 2 1 8 8 C 1.50703 * 109.46640 * 185.00400 * 7 5 2 9 9 C 1.38234 * 120.00257 * 90.00059 * 8 7 5 10 10 C 1.38238 * 119.99675 * 180.27927 * 9 8 7 11 11 C 1.38228 * 120.00120 * 359.47825 * 10 9 8 12 12 C 1.38234 * 120.00000 * 0.52176 * 11 10 9 13 13 C 1.38234 * 119.99503 * 270.01660 * 8 7 5 14 14 N 1.46497 * 109.47084 * 180.02562 * 5 2 1 15 15 C 1.36934 * 119.99808 * 85.00496 * 14 5 2 16 16 H 1.07998 * 120.00223 * 0.02562 * 15 14 5 17 17 C 1.38813 * 119.99969 * 179.97438 * 15 14 5 18 18 N 1.31623 * 120.00245 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46870 * 59.99998 * 19 17 15 21 21 H 1.48499 * 109.47454 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47084 * 300.00499 * 19 17 15 23 23 H 1.08996 * 109.47368 * 299.99671 * 1 2 3 24 24 H 1.09005 * 109.47543 * 60.00177 * 1 2 3 25 25 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47194 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46741 * 300.00314 * 3 2 1 28 28 H 1.08996 * 109.46705 * 59.99923 * 3 2 1 29 29 H 1.08999 * 109.47183 * 299.99938 * 4 2 1 30 30 H 1.09005 * 109.46782 * 59.99846 * 4 2 1 31 31 H 1.08997 * 109.47301 * 179.97438 * 4 2 1 32 32 H 1.08988 * 109.47457 * 64.99925 * 7 5 2 33 33 H 1.09000 * 109.46671 * 304.99696 * 7 5 2 34 34 H 1.08002 * 119.99744 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 36 36 H 1.07999 * 119.99932 * 180.24104 * 11 10 9 37 37 H 1.08001 * 120.00310 * 179.72161 * 12 11 10 38 38 H 1.07997 * 120.00460 * 0.02562 * 13 8 7 39 39 H 0.96998 * 120.00247 * 264.99860 * 14 5 2 40 40 H 0.96989 * 120.00566 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 1.6767 -0.2074 2.1392 7 6 1.5301 -2.1638 1.2492 8 6 1.9288 -2.8375 2.5369 9 6 1.0887 -2.7849 3.6334 10 6 1.4571 -3.3980 4.8164 11 6 2.6607 -4.0727 4.8995 12 6 3.5008 -4.1253 3.8030 13 6 3.1348 -3.5077 2.6216 14 7 3.5050 -0.7206 1.2495 15 6 4.1891 0.3544 1.7509 16 1 3.6487 1.2016 2.1467 17 6 5.5772 0.3548 1.7516 18 7 6.2359 -0.6779 1.2698 19 14 6.5106 1.8215 2.4351 20 1 6.1511 2.0154 3.8629 21 1 7.9707 1.5762 2.3207 22 1 6.1519 3.0392 1.6645 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 1.9647 -2.7027 0.4074 33 1 0.4438 -2.1650 1.1596 34 1 0.1467 -2.2607 3.5674 35 1 0.8027 -3.3532 5.6744 36 1 2.9467 -4.5550 5.8225 37 1 4.4431 -4.6487 3.8693 38 1 3.7915 -3.5482 1.7652 39 1 3.9904 -1.4817 0.8945 40 1 7.2058 -0.6779 1.2706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381177957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:00 Heat of formation + Delta-G solvation = 16.465237 kcal Electronic energy + Delta-G solvation = -18697.881256 eV Core-core repulsion = 16091.029806 eV Total energy + Delta-G solvation = -2606.851450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06666 -37.53758 -33.33672 -32.38315 -30.38062 -30.03427 -27.68975 -26.67591 -26.01044 -23.91234 -22.29909 -21.86605 -20.38702 -17.80140 -17.04119 -16.29493 -15.00240 -14.88688 -14.37870 -14.13544 -13.68414 -13.54784 -13.19217 -12.94681 -12.80592 -12.26982 -12.22776 -11.86851 -11.55390 -11.22556 -10.93674 -10.84464 -10.77361 -10.74484 -10.63994 -10.37748 -10.16562 -10.12653 -9.98339 -9.77466 -9.34176 -8.76683 -8.37320 -8.06636 -6.83690 -5.69618 -2.94797 1.90326 1.95509 3.46986 3.52085 3.52575 4.32488 4.65306 5.26633 5.30855 5.43504 5.51047 5.52245 5.58624 5.62810 5.71238 5.79927 6.00796 6.07905 6.10877 6.16923 6.18889 6.22576 6.37530 6.38580 6.44439 6.51054 6.56248 6.63321 6.70471 6.83835 6.91464 6.93463 7.01028 7.06941 7.15764 7.27597 7.41737 7.56185 7.77885 8.49390 9.60882 10.19260 10.54809 11.53107 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.010174 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.718056 B = 2751.503465 C = 4069.821456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.132 4.132 5 C 0.195 3.805 6 H 0.045 0.955 7 C -0.093 4.093 8 C -0.058 4.058 9 C -0.125 4.125 10 C -0.128 4.128 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.088 4.088 14 N -0.713 5.713 15 C -0.224 4.224 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.288 1.288 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.383 0.617 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -4.613 0.839 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.190 4.190 5 C 0.084 3.916 6 H 0.063 0.937 7 C -0.131 4.131 8 C -0.058 4.058 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.136 4.136 13 C -0.106 4.106 14 N -0.354 5.354 15 C -0.355 4.355 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.215 1.215 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.217 0.783 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.521 -4.457 0.926 11.463 hybrid contribution 0.831 0.727 0.357 1.161 sum -9.690 -3.730 1.283 10.462 Atomic orbital electron populations 1.21960 0.96663 1.00710 1.00583 1.21195 0.93094 0.96816 0.97786 1.21866 1.04247 0.94357 0.98678 1.21775 1.02557 0.98612 0.96025 1.20187 0.86117 0.90980 0.94307 0.93665 1.21084 1.00302 0.97467 0.94238 1.19834 0.94248 0.96047 0.95688 1.20928 0.99717 1.00463 0.93164 1.20952 0.97030 0.99194 0.97424 1.20976 0.95162 1.00964 0.98242 1.21084 0.98997 1.00048 0.93456 1.21055 0.95396 0.96003 0.98182 1.42350 0.98833 1.20842 1.73362 1.19132 0.88750 0.96079 1.31548 0.91364 1.24636 0.96396 0.97580 1.02289 1.69623 1.06643 1.29841 1.52071 0.86402 0.79151 0.82624 0.78856 1.21529 1.21909 1.21459 0.93416 0.93801 0.93105 0.89439 0.95240 0.94264 0.93827 0.94569 0.91353 0.91134 0.91242 0.86906 0.87048 0.87084 0.86727 0.85997 0.78332 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.13 37.15 0.30 -1.72 16 2 C -0.09 -1.48 0.62 -154.51 -0.10 -1.58 16 3 C -0.13 -2.51 7.54 37.16 0.28 -2.23 16 4 C -0.13 -2.25 7.96 37.16 0.30 -1.95 16 5 C 0.19 3.72 1.70 -67.93 -0.12 3.60 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.09 -1.54 4.17 -27.88 -0.12 -1.66 16 8 C -0.06 -1.02 4.95 -104.62 -0.52 -1.54 16 9 C -0.12 -2.00 9.70 -39.58 -0.38 -2.39 16 10 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 11 C -0.14 -2.10 10.05 -39.59 -0.40 -2.50 16 12 C -0.12 -2.01 10.05 -39.58 -0.40 -2.40 16 13 C -0.09 -1.63 9.10 -39.58 -0.36 -1.99 16 14 N -0.71 -16.64 3.69 -53.43 -0.20 -16.84 16 15 C -0.22 -5.90 7.57 -15.06 -0.11 -6.02 16 16 H 0.07 1.79 7.40 -52.49 -0.39 1.41 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 19 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 26 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.35 7.61 -51.93 -0.39 0.96 16 32 H 0.07 1.16 6.65 -51.94 -0.35 0.82 16 33 H 0.07 1.00 6.12 -51.93 -0.32 0.68 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.34 7.57 -52.49 -0.40 1.95 16 39 H 0.38 9.55 7.02 -40.82 -0.29 9.26 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -28.37 315.27 -8.33 -36.69 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.47 Total: 9.77 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.11 Total: -25.16 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.53 Total: -43.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.37 -8.33 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381177957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.160 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds