Wall clock time and date at job start Mon Mar 30 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47173 * 2 1 4 4 C 1.53001 * 109.47371 * 240.00154 * 2 1 3 5 5 C 1.53002 * 109.47573 * 119.99714 * 2 1 3 6 6 H 1.08996 * 109.47275 * 300.00671 * 5 2 1 7 7 C 1.53007 * 109.46546 * 60.00509 * 5 2 1 8 8 C 1.50703 * 109.46640 * 185.00400 * 7 5 2 9 9 C 1.38234 * 120.00257 * 90.00059 * 8 7 5 10 10 C 1.38238 * 119.99675 * 180.27927 * 9 8 7 11 11 C 1.38228 * 120.00120 * 359.47825 * 10 9 8 12 12 C 1.38234 * 120.00000 * 0.52176 * 11 10 9 13 13 C 1.38234 * 119.99503 * 270.01660 * 8 7 5 14 14 N 1.46497 * 109.47084 * 180.02562 * 5 2 1 15 15 C 1.36934 * 119.99808 * 85.00496 * 14 5 2 16 16 H 1.07998 * 120.00223 * 0.02562 * 15 14 5 17 17 C 1.38813 * 119.99969 * 179.97438 * 15 14 5 18 18 N 1.31623 * 120.00245 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46870 * 59.99998 * 19 17 15 21 21 H 1.48499 * 109.47454 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47084 * 300.00499 * 19 17 15 23 23 H 1.08996 * 109.47368 * 299.99671 * 1 2 3 24 24 H 1.09005 * 109.47543 * 60.00177 * 1 2 3 25 25 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47194 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46741 * 300.00314 * 3 2 1 28 28 H 1.08996 * 109.46705 * 59.99923 * 3 2 1 29 29 H 1.08999 * 109.47183 * 299.99938 * 4 2 1 30 30 H 1.09005 * 109.46782 * 59.99846 * 4 2 1 31 31 H 1.08997 * 109.47301 * 179.97438 * 4 2 1 32 32 H 1.08988 * 109.47457 * 64.99925 * 7 5 2 33 33 H 1.09000 * 109.46671 * 304.99696 * 7 5 2 34 34 H 1.08002 * 119.99744 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 36 36 H 1.07999 * 119.99932 * 180.24104 * 11 10 9 37 37 H 1.08001 * 120.00310 * 179.72161 * 12 11 10 38 38 H 1.07997 * 120.00460 * 0.02562 * 13 8 7 39 39 H 0.96998 * 120.00247 * 264.99860 * 14 5 2 40 40 H 0.96989 * 120.00566 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 1.6767 -0.2074 2.1392 7 6 1.5301 -2.1638 1.2492 8 6 1.9288 -2.8375 2.5369 9 6 1.0887 -2.7849 3.6334 10 6 1.4571 -3.3980 4.8164 11 6 2.6607 -4.0727 4.8995 12 6 3.5008 -4.1253 3.8030 13 6 3.1348 -3.5077 2.6216 14 7 3.5050 -0.7206 1.2495 15 6 4.1891 0.3544 1.7509 16 1 3.6487 1.2016 2.1467 17 6 5.5772 0.3548 1.7516 18 7 6.2359 -0.6779 1.2698 19 14 6.5106 1.8215 2.4351 20 1 6.1511 2.0154 3.8629 21 1 7.9707 1.5762 2.3207 22 1 6.1519 3.0392 1.6645 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 1.9647 -2.7027 0.4074 33 1 0.4438 -2.1650 1.1596 34 1 0.1467 -2.2607 3.5674 35 1 0.8027 -3.3532 5.6744 36 1 2.9467 -4.5550 5.8225 37 1 4.4431 -4.6487 3.8693 38 1 3.7915 -3.5482 1.7652 39 1 3.9904 -1.4817 0.8945 40 1 7.2058 -0.6779 1.2706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381177957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:59 Heat of formation + Delta-G solvation = 2.517685 kcal Electronic energy + Delta-G solvation = -18698.486067 eV Core-core repulsion = 16091.029806 eV Total energy + Delta-G solvation = -2607.456261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41681 -38.94712 -35.18160 -33.81884 -31.92399 -31.58523 -29.16443 -27.99946 -27.44816 -25.72593 -23.80918 -23.23770 -21.70932 -19.36066 -18.96431 -17.55168 -16.65661 -16.29329 -15.92878 -15.54362 -15.31510 -15.17493 -14.67994 -14.39042 -14.12523 -13.68736 -13.55360 -13.30964 -12.92777 -12.82529 -12.70698 -12.51394 -12.41172 -12.16271 -12.03235 -12.01631 -11.84137 -11.62161 -11.54460 -11.20850 -11.05463 -10.70703 -9.65995 -9.37845 -8.79298 -7.82446 -5.04450 0.62733 0.67167 1.46643 1.47314 1.52609 2.61932 3.03598 3.49750 3.96188 4.00349 4.12817 4.17637 4.25600 4.32758 4.39248 4.41852 4.65965 4.71505 4.78351 4.84174 4.87707 4.95514 4.99542 5.02844 5.11407 5.19112 5.27803 5.31489 5.31741 5.40383 5.44680 5.58390 5.61718 5.70924 5.73861 5.76247 5.89195 5.95086 6.30130 6.39840 7.47084 8.26099 8.49288 9.40907 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.010174 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.718056 B = 2751.503465 C = 4069.821456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.127 4.127 5 C 0.193 3.807 6 H 0.032 0.968 7 C -0.083 4.083 8 C -0.075 4.075 9 C -0.130 4.130 10 C -0.127 4.127 11 C -0.138 4.138 12 C -0.136 4.136 13 C -0.115 4.115 14 N -0.718 5.718 15 C -0.204 4.204 16 H 0.068 0.932 17 C -0.075 4.075 18 N -0.966 5.966 19 Si 0.950 3.050 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.282 1.282 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.372 0.628 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 -4.406 1.580 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.189 4.189 4 C -0.184 4.184 5 C 0.085 3.915 6 H 0.050 0.950 7 C -0.121 4.121 8 C -0.075 4.075 9 C -0.148 4.148 10 C -0.145 4.145 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.133 4.133 14 N -0.357 5.357 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.782 3.218 20 H -0.213 1.213 21 H -0.228 1.228 22 H -0.209 1.209 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.204 0.796 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.363 -4.234 1.669 14.116 hybrid contribution 1.601 0.651 0.148 1.735 sum -11.761 -3.582 1.817 12.428 Atomic orbital electron populations 1.21878 0.93406 1.02251 1.01657 1.21115 0.95617 0.95350 0.96551 1.21795 1.01536 0.95881 0.99644 1.21705 1.00076 0.99912 0.96696 1.20359 0.83556 0.92972 0.94652 0.95006 1.21006 1.01893 0.95248 0.93941 1.19994 0.94307 0.96478 0.96765 1.21267 1.00329 1.00343 0.92862 1.21391 0.97107 0.97838 0.98184 1.21333 0.95007 1.00636 0.98575 1.21298 0.99876 1.00450 0.93797 1.21052 0.96110 0.97928 0.98237 1.42464 1.00784 1.19561 1.72922 1.19368 0.88877 0.96308 1.29093 0.91418 1.25233 0.97449 0.99781 1.04228 1.69769 1.06009 1.31558 1.54525 0.85541 0.77540 0.80460 0.78283 1.21299 1.22791 1.20903 0.92837 0.92320 0.91337 0.93497 0.93272 0.94277 0.92219 0.92862 0.95130 0.91570 0.88178 0.84482 0.83746 0.84372 0.86258 0.88357 0.79550 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.13 71.98 0.59 -2.73 16 2 C -0.08 -2.74 0.62 -52.18 -0.03 -2.77 16 3 C -0.13 -4.77 7.54 71.98 0.54 -4.23 16 4 C -0.13 -4.14 7.96 71.98 0.57 -3.56 16 5 C 0.19 7.23 1.70 44.99 0.08 7.30 16 6 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 7 C -0.08 -2.63 4.17 29.85 0.12 -2.51 16 8 C -0.08 -2.57 4.95 -19.87 -0.10 -2.67 16 9 C -0.13 -3.84 9.70 22.27 0.22 -3.62 16 10 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 11 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 12 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 13 C -0.11 -4.34 9.10 22.27 0.20 -4.14 16 14 N -0.72 -34.22 3.69 -322.94 -1.19 -35.41 16 15 C -0.20 -10.96 7.57 84.03 0.64 -10.33 16 16 H 0.07 3.59 7.40 -2.91 -0.02 3.57 16 17 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 19 Si 0.95 47.01 29.55 68.60 2.03 49.04 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 22 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.47 6.32 -2.39 -0.02 1.45 16 26 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.73 6.54 -2.39 -0.02 1.72 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.03 1.21 7.61 -2.39 -0.02 1.20 16 32 H 0.07 2.14 6.65 -2.39 -0.02 2.13 16 33 H 0.10 2.53 6.12 -2.39 -0.01 2.51 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 38 H 0.10 4.06 7.57 -2.91 -0.02 4.04 16 39 H 0.37 19.36 7.02 -92.71 -0.65 18.71 16 40 H 0.24 14.70 8.31 -92.72 -0.77 13.93 16 Total: -1.00 -62.59 315.27 5.44 -57.15 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.35 Total: 32.19 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 3.96 Total: -44.54 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -0.91 Total: -93.85 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -62.59 5.44 -57.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381177957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.668 kcal (2) G-P(sol) polarization free energy of solvation -62.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds