Wall clock time and date at job start Mon Mar 30 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47380 * 2 1 4 4 C 1.52999 * 109.46990 * 239.99844 * 2 1 3 5 5 C 1.53004 * 109.46916 * 120.00364 * 2 1 3 6 6 H 1.08998 * 109.47195 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.46916 * 59.99598 * 5 2 1 8 8 C 1.50706 * 109.46589 * 174.99873 * 7 5 2 9 9 C 1.38237 * 119.99744 * 90.00605 * 8 7 5 10 10 C 1.38235 * 119.99712 * 180.02562 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.94731 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00223 * 270.01815 * 8 7 5 14 14 N 1.46497 * 109.46851 * 299.99767 * 5 2 1 15 15 C 1.36941 * 119.99840 * 274.99720 * 14 5 2 16 16 H 1.07995 * 120.00292 * 0.02562 * 15 14 5 17 17 C 1.38813 * 119.99589 * 180.02562 * 15 14 5 18 18 N 1.31628 * 119.99805 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00395 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46892 * 90.00073 * 19 17 15 21 21 H 1.48500 * 109.47037 * 210.00073 * 19 17 15 22 22 H 1.48498 * 109.47255 * 330.00333 * 19 17 15 23 23 H 1.09004 * 109.46906 * 300.00572 * 1 2 3 24 24 H 1.09001 * 109.46822 * 59.99505 * 1 2 3 25 25 H 1.08998 * 109.47607 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47300 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47547 * 300.00051 * 3 2 1 28 28 H 1.09002 * 109.46894 * 60.00143 * 3 2 1 29 29 H 1.08998 * 109.47171 * 300.00543 * 4 2 1 30 30 H 1.09001 * 109.46806 * 60.00642 * 4 2 1 31 31 H 1.09002 * 109.47340 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47218 * 55.00619 * 7 5 2 33 33 H 1.08993 * 109.47154 * 295.00053 * 7 5 2 34 34 H 1.08005 * 120.00088 * 359.97438 * 9 8 7 35 35 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 36 36 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 38 38 H 1.07998 * 119.99975 * 0.02562 * 13 8 7 39 39 H 0.97000 * 120.00315 * 95.00058 * 14 5 2 40 40 H 0.96995 * 119.99753 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7214 1.2492 6 1 3.1300 -0.7210 1.2495 7 6 1.5299 -2.1638 1.2491 8 6 2.1308 -2.9091 2.4130 9 6 1.4817 -2.9241 3.6335 10 6 2.0332 -3.6073 4.7012 11 6 3.2331 -4.2764 4.5482 12 6 3.8846 -4.2574 3.3291 13 6 3.3311 -3.5776 2.2603 14 7 1.5517 -0.0308 2.4454 15 6 2.2394 1.0429 2.9448 16 1 3.1416 1.3809 2.4567 17 6 1.7769 1.6970 4.0785 18 7 2.4377 2.7293 4.5583 19 14 0.2169 1.1121 4.9233 20 1 0.5615 0.0980 5.9519 21 1 -0.4572 2.2655 5.5716 22 1 -0.6937 0.5077 3.9179 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 1.8183 -2.6511 0.3178 33 1 0.4436 -2.1650 1.3387 34 1 0.5442 -2.4013 3.7530 35 1 1.5264 -3.6186 5.6548 36 1 3.6637 -4.8105 5.3823 37 1 4.8242 -4.7765 3.2108 38 1 3.8384 -3.5653 1.3070 39 1 0.7412 -0.3340 2.8836 40 1 2.1148 3.1861 5.3507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381177968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:02 Heat of formation + Delta-G solvation = 20.393094 kcal Electronic energy + Delta-G solvation = -18779.671937 eV Core-core repulsion = 16172.990812 eV Total energy + Delta-G solvation = -2606.681125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.22969 -37.67954 -33.42686 -32.48638 -30.63385 -30.43283 -27.86871 -26.78015 -26.19438 -23.87720 -22.32937 -21.78319 -20.53637 -18.15141 -17.27779 -16.44135 -15.13973 -15.05840 -14.38421 -14.29015 -13.94152 -13.55349 -13.16617 -13.12815 -12.81236 -12.45813 -12.31625 -12.16492 -11.62772 -11.38311 -11.03450 -10.98017 -10.89292 -10.87837 -10.73988 -10.49190 -10.27926 -10.13879 -9.98638 -9.85067 -9.35459 -8.80689 -8.53126 -8.21061 -7.16080 -5.70773 -3.03352 1.76486 1.79286 3.38449 3.41149 3.47497 4.17310 4.63762 5.12678 5.15324 5.29062 5.34019 5.40763 5.45567 5.51919 5.61244 5.69493 5.86852 5.91095 5.96060 5.99515 6.07026 6.09148 6.25349 6.27726 6.35485 6.40430 6.44748 6.47729 6.65823 6.73811 6.78598 6.81180 6.86859 6.94226 7.02415 7.12524 7.39559 7.43375 8.07101 8.48370 9.27727 10.00505 10.21011 11.47888 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.011339 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.768891 B = 2468.792758 C = 3741.950265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.141 4.141 5 C 0.200 3.800 6 H 0.055 0.945 7 C -0.096 4.096 8 C -0.056 4.056 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.133 4.133 12 C -0.122 4.122 13 C -0.121 4.121 14 N -0.740 5.740 15 C -0.227 4.227 16 H 0.092 0.908 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.875 3.125 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.278 1.278 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.359 0.641 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -12.641 -7.001 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.191 4.191 4 C -0.199 4.199 5 C 0.090 3.910 6 H 0.073 0.927 7 C -0.134 4.134 8 C -0.056 4.056 9 C -0.120 4.120 10 C -0.136 4.136 11 C -0.151 4.151 12 C -0.140 4.140 13 C -0.139 4.139 14 N -0.382 5.382 15 C -0.357 4.357 16 H 0.110 0.890 17 C -0.192 4.192 18 N -0.585 5.585 19 Si 0.706 3.294 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.204 1.204 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.192 0.808 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.404 -12.449 -6.940 14.322 hybrid contribution -1.084 -0.176 0.820 1.370 sum -2.488 -12.625 -6.120 14.249 Atomic orbital electron populations 1.21796 0.95654 1.00356 1.01322 1.21167 0.95384 0.96866 0.95413 1.21865 0.99957 0.95353 1.01970 1.21955 1.00613 0.99725 0.97615 1.20172 0.97060 0.87577 0.86222 0.92678 1.21130 1.00351 0.96514 0.95435 1.19824 0.94742 0.95713 0.95361 1.20966 1.00226 0.98091 0.92719 1.21076 0.96259 0.97835 0.98470 1.20993 0.95923 1.00858 0.97314 1.21008 0.99475 1.00138 0.93419 1.20954 0.95685 0.98481 0.98812 1.42747 1.29420 1.36210 1.29803 1.19047 1.06089 1.03607 1.06939 0.89032 1.24607 0.98308 0.98001 0.98260 1.69691 1.40558 1.23020 1.25195 0.86690 0.84819 0.77921 0.79990 1.21145 1.22060 1.20415 0.91943 0.94163 0.93769 0.93930 0.95185 0.89252 0.93130 0.93632 0.93176 0.90701 0.91237 0.86849 0.86727 0.86823 0.86739 0.86572 0.80828 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.96 37.16 0.30 -1.86 16 2 C -0.09 -1.42 0.62 -154.51 -0.10 -1.52 16 3 C -0.13 -2.52 7.54 37.15 0.28 -2.24 16 4 C -0.14 -1.94 8.13 37.16 0.30 -1.64 16 5 C 0.20 3.67 1.70 -67.93 -0.12 3.56 16 6 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 7 C -0.10 -1.50 4.17 -27.88 -0.12 -1.61 16 8 C -0.06 -0.93 4.95 -104.62 -0.52 -1.45 16 9 C -0.10 -1.76 9.10 -39.58 -0.36 -2.12 16 10 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 11 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 12 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 13 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 14 N -0.74 -16.49 3.49 -53.43 -0.19 -16.67 16 15 C -0.23 -6.09 8.05 -15.06 -0.12 -6.21 16 16 H 0.09 2.67 7.62 -52.49 -0.40 2.27 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.94 -29.14 13.97 55.49 0.78 -28.36 16 19 Si 0.87 21.95 27.74 -169.99 -4.71 17.23 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 23 H 0.06 1.15 7.60 -51.93 -0.39 0.76 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.63 6.55 -51.93 -0.34 0.29 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 2.00 6.01 -51.93 -0.31 1.69 16 29 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.00 6.12 -51.93 -0.32 0.68 16 33 H 0.07 1.06 6.65 -51.93 -0.35 0.71 16 34 H 0.11 1.97 7.57 -52.48 -0.40 1.57 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.36 8.02 4.88 -40.82 -0.20 7.82 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -29.92 312.15 -7.97 -37.89 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.43 Total: 9.31 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -2.12 Total: -24.10 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.59 Total: -45.03 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.92 -7.97 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381177968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.285 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds