Wall clock time and date at job start Mon Mar 30 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47488 * 2 1 4 4 C 1.52997 * 109.47021 * 59.99842 * 3 2 1 5 5 C 1.53001 * 109.47043 * 299.99944 * 3 2 1 6 6 N 1.46902 * 109.46962 * 179.97438 * 3 2 1 7 7 C 1.46895 * 110.99798 * 180.02562 * 6 3 2 8 8 C 1.50696 * 109.47395 * 179.97438 * 7 6 3 9 9 C 1.38635 * 119.74985 * 269.73125 * 8 7 6 10 10 C 1.37617 * 120.24687 * 179.71926 * 9 8 7 11 11 C 1.40716 * 119.74723 * 0.57065 * 10 9 8 12 12 C 1.41396 * 120.24644 * 179.68554 * 11 10 9 13 13 H 1.08005 * 119.99733 * 204.40359 * 12 11 10 14 14 C 1.39939 * 120.00101 * 24.40261 * 12 11 10 15 15 N 1.30820 * 120.00244 * 17.84696 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 197.85075 * 14 12 11 17 17 H 1.48499 * 109.47197 * 89.99595 * 16 14 12 18 18 H 1.48506 * 109.47141 * 209.99804 * 16 14 12 19 19 H 1.48498 * 109.46874 * 329.99781 * 16 14 12 20 20 C 1.40719 * 119.51127 * 359.69821 * 11 10 9 21 21 C 1.37620 * 119.74095 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.46861 * 300.00306 * 1 2 3 23 23 H 1.09002 * 109.46903 * 59.99836 * 1 2 3 24 24 H 1.08994 * 109.47434 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46934 * 239.99772 * 2 1 3 26 26 H 1.09002 * 109.46903 * 120.00164 * 2 1 3 27 27 H 1.08994 * 109.47385 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47163 * 300.00120 * 4 3 2 29 29 H 1.09002 * 109.47020 * 60.00051 * 4 3 2 30 30 H 1.09005 * 109.46591 * 300.00030 * 5 3 2 31 31 H 1.09000 * 109.47126 * 59.99889 * 5 3 2 32 32 H 1.08993 * 109.46970 * 180.02562 * 5 3 2 33 33 H 1.00897 * 111.00112 * 56.04744 * 6 3 2 34 34 H 1.09007 * 109.47449 * 59.99598 * 7 6 3 35 35 H 1.08998 * 109.47065 * 300.00125 * 7 6 3 36 36 H 1.07993 * 119.87867 * 359.97096 * 9 8 7 37 37 H 1.08003 * 120.13271 * 180.27444 * 10 9 8 38 38 H 0.96997 * 120.00535 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.12787 * 179.97438 * 20 11 10 40 40 H 1.08006 * 119.87289 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2493 6 7 3.5091 1.4423 0.0006 7 6 4.0356 2.8137 0.0013 8 6 5.5420 2.7735 0.0025 9 6 6.2288 2.7606 1.2067 10 6 7.6043 2.7181 1.2198 11 6 8.3139 2.6998 0.0048 12 6 9.7273 2.6629 0.0060 13 1 10.2779 3.0353 -0.8453 14 6 10.4128 2.1439 1.1101 15 7 9.7853 1.3868 1.9729 16 14 12.2240 2.5322 1.3520 17 1 12.3611 3.7692 2.1620 18 1 12.8824 1.4032 2.0572 19 1 12.8682 2.7327 0.0291 20 6 7.6064 2.7189 -1.2115 21 6 6.2307 2.7556 -1.2006 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8938 3.1912 1.2495 28 1 0.4401 2.1638 1.2492 29 1 1.8934 1.6498 2.1392 30 1 1.8935 1.6498 -2.1392 31 1 0.4401 2.1638 -1.2493 32 1 1.8939 3.1912 -1.2495 33 1 3.8710 0.9161 -0.7805 34 1 3.6857 3.3369 0.8912 35 1 3.6865 3.3373 -0.8887 36 1 5.6824 2.7799 2.1380 37 1 8.1373 2.7036 2.1590 38 1 10.2603 1.0273 2.7384 39 1 8.1409 2.7055 -2.1497 40 1 5.6856 2.7707 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381319586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:05 Heat of formation + Delta-G solvation = -1.215826 kcal Electronic energy + Delta-G solvation = -17681.357136 eV Core-core repulsion = 15073.738978 eV Total energy + Delta-G solvation = -2607.618158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -38.67366 -37.30466 -34.08815 -32.69773 -30.13893 -29.23531 -28.59306 -27.27411 -26.34953 -24.20755 -22.42882 -20.90773 -19.77830 -18.64914 -17.25325 -16.00010 -15.26498 -14.82471 -14.58337 -14.28782 -13.98698 -13.57255 -13.33462 -12.92807 -12.57349 -12.34825 -12.10832 -12.06903 -11.87577 -11.60596 -11.38797 -11.20202 -11.15474 -11.04913 -10.89620 -10.56469 -10.38214 -10.33132 -10.25009 -9.54159 -9.31610 -9.09022 -7.92319 -7.39359 -7.25077 -6.71889 -4.31089 2.78448 3.08870 3.12264 3.12736 3.21573 3.95739 4.45071 4.76764 4.86541 4.99295 5.26560 5.33532 5.48366 5.55201 5.68822 5.75206 5.80765 5.83533 5.93031 5.98438 6.04272 6.09681 6.11943 6.21706 6.31122 6.38012 6.47306 6.49189 6.54638 7.00404 7.11235 7.34717 7.41043 7.56195 7.66194 7.82374 7.96774 8.10128 8.20714 8.34817 8.69261 8.93845 9.02674 10.22413 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.047080 B = 0.004217 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.584563 B = 6637.445436 C = 6840.937736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C 0.106 3.894 4 C -0.140 4.140 5 C -0.183 4.183 6 N -0.674 5.674 7 C 0.121 3.879 8 C -0.211 4.211 9 C -0.080 4.080 10 C -0.167 4.167 11 C 0.112 3.888 12 C -0.465 4.465 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.228 4.228 21 C -0.086 4.086 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.338 0.662 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.089 0.911 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -0.286 -1.752 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C 0.015 3.985 4 C -0.197 4.197 5 C -0.242 4.242 6 N -0.304 5.304 7 C -0.007 4.007 8 C -0.213 4.213 9 C -0.099 4.099 10 C -0.187 4.187 11 C 0.109 3.891 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.417 5.417 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.247 4.247 21 C -0.105 4.105 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.479 -0.505 -0.848 12.518 hybrid contribution 0.706 0.297 -0.822 1.123 sum -11.773 -0.209 -1.670 11.893 Atomic orbital electron populations 1.21885 0.96063 1.01271 1.01846 1.21509 0.95157 0.95781 1.02425 1.20938 0.88773 0.94755 0.94075 1.21915 0.99804 1.00377 0.97629 1.22616 1.01413 1.01360 0.98790 1.60795 1.04435 1.15260 1.49946 1.20638 0.92754 0.88444 0.98850 1.18947 0.92375 1.16525 0.93432 1.20498 0.94387 0.99671 0.95313 1.21314 0.92434 1.06241 0.98676 1.17616 0.93206 0.87363 0.90885 1.19598 0.91636 1.36240 1.01981 0.90555 1.25898 1.00746 0.92590 0.94909 1.69835 1.38580 1.22369 1.10924 0.86338 0.82126 0.78923 0.79467 1.19308 1.20345 1.18675 1.20927 0.93129 1.13738 0.96929 1.20353 0.94246 1.00776 0.95157 0.92443 0.92735 0.93039 0.92352 0.91184 0.92648 0.92670 0.91970 0.92981 0.92352 0.92366 0.84315 0.91811 0.96143 0.89548 0.86559 0.90920 0.89246 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.21 37.16 0.34 -1.11 16 2 C -0.11 -1.30 5.25 -26.73 -0.14 -1.44 16 3 C 0.11 1.38 0.74 -131.60 -0.10 1.28 16 4 C -0.14 -1.74 7.88 37.16 0.29 -1.45 16 5 C -0.18 -2.18 7.88 37.16 0.29 -1.88 16 6 N -0.67 -10.99 6.08 -101.22 -0.62 -11.61 16 7 C 0.12 2.15 5.02 -4.98 -0.02 2.12 16 8 C -0.21 -4.62 5.42 -104.33 -0.56 -5.19 16 9 C -0.08 -1.90 9.67 -39.66 -0.38 -2.29 16 10 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 12 C -0.46 -12.54 9.05 -37.74 -0.34 -12.89 16 13 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 14 C 0.08 1.94 5.14 -17.35 -0.09 1.86 16 15 N -0.79 -20.82 10.95 55.55 0.61 -20.22 16 16 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 20 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 21 C -0.09 -1.95 9.67 -39.66 -0.38 -2.33 16 22 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 23 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.72 6.40 -51.93 -0.33 0.38 16 28 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 33 H 0.34 5.63 8.71 -39.29 -0.34 5.29 16 34 H 0.06 1.12 6.24 -51.92 -0.32 0.79 16 35 H 0.02 0.35 6.24 -51.93 -0.32 0.02 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.08 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -27.09 313.90 -8.96 -36.06 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.25 Total: 8.88 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: -2.41 Total: -31.71 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: -0.01 Total: -31.82 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.09 -8.96 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381319586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.842 kcal (2) G-P(sol) polarization free energy of solvation -27.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds