Wall clock time and date at job start Mon Mar 30 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47488 * 2 1 4 4 C 1.52997 * 109.47021 * 59.99842 * 3 2 1 5 5 C 1.53001 * 109.47043 * 299.99944 * 3 2 1 6 6 N 1.46902 * 109.46962 * 179.97438 * 3 2 1 7 7 C 1.46895 * 110.99798 * 180.02562 * 6 3 2 8 8 C 1.50696 * 109.47395 * 179.97438 * 7 6 3 9 9 C 1.38635 * 119.74985 * 269.73125 * 8 7 6 10 10 C 1.37617 * 120.24687 * 179.71926 * 9 8 7 11 11 C 1.40716 * 119.74723 * 0.57065 * 10 9 8 12 12 C 1.41396 * 120.24644 * 179.68554 * 11 10 9 13 13 H 1.08005 * 119.99733 * 204.40359 * 12 11 10 14 14 C 1.39939 * 120.00101 * 24.40261 * 12 11 10 15 15 N 1.30820 * 120.00244 * 17.84696 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 197.85075 * 14 12 11 17 17 H 1.48499 * 109.47197 * 89.99595 * 16 14 12 18 18 H 1.48506 * 109.47141 * 209.99804 * 16 14 12 19 19 H 1.48498 * 109.46874 * 329.99781 * 16 14 12 20 20 C 1.40719 * 119.51127 * 359.69821 * 11 10 9 21 21 C 1.37620 * 119.74095 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.46861 * 300.00306 * 1 2 3 23 23 H 1.09002 * 109.46903 * 59.99836 * 1 2 3 24 24 H 1.08994 * 109.47434 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46934 * 239.99772 * 2 1 3 26 26 H 1.09002 * 109.46903 * 120.00164 * 2 1 3 27 27 H 1.08994 * 109.47385 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47163 * 300.00120 * 4 3 2 29 29 H 1.09002 * 109.47020 * 60.00051 * 4 3 2 30 30 H 1.09005 * 109.46591 * 300.00030 * 5 3 2 31 31 H 1.09000 * 109.47126 * 59.99889 * 5 3 2 32 32 H 1.08993 * 109.46970 * 180.02562 * 5 3 2 33 33 H 1.00897 * 111.00112 * 56.04744 * 6 3 2 34 34 H 1.09007 * 109.47449 * 59.99598 * 7 6 3 35 35 H 1.08998 * 109.47065 * 300.00125 * 7 6 3 36 36 H 1.07993 * 119.87867 * 359.97096 * 9 8 7 37 37 H 1.08003 * 120.13271 * 180.27444 * 10 9 8 38 38 H 0.96997 * 120.00535 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.12787 * 179.97438 * 20 11 10 40 40 H 1.08006 * 119.87289 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2493 6 7 3.5091 1.4423 0.0006 7 6 4.0356 2.8137 0.0013 8 6 5.5420 2.7735 0.0025 9 6 6.2288 2.7606 1.2067 10 6 7.6043 2.7181 1.2198 11 6 8.3139 2.6998 0.0048 12 6 9.7273 2.6629 0.0060 13 1 10.2779 3.0353 -0.8453 14 6 10.4128 2.1439 1.1101 15 7 9.7853 1.3868 1.9729 16 14 12.2240 2.5322 1.3520 17 1 12.3611 3.7692 2.1620 18 1 12.8824 1.4032 2.0572 19 1 12.8682 2.7327 0.0291 20 6 7.6064 2.7189 -1.2115 21 6 6.2307 2.7556 -1.2006 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8938 3.1912 1.2495 28 1 0.4401 2.1638 1.2492 29 1 1.8934 1.6498 2.1392 30 1 1.8935 1.6498 -2.1392 31 1 0.4401 2.1638 -1.2493 32 1 1.8939 3.1912 -1.2495 33 1 3.8710 0.9161 -0.7805 34 1 3.6857 3.3369 0.8912 35 1 3.6865 3.3373 -0.8887 36 1 5.6824 2.7799 2.1380 37 1 8.1373 2.7036 2.1590 38 1 10.2603 1.0273 2.7384 39 1 8.1409 2.7055 -2.1497 40 1 5.6856 2.7707 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381319586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:04 Heat of formation + Delta-G solvation = -15.423996 kcal Electronic energy + Delta-G solvation = -17681.973249 eV Core-core repulsion = 15073.738978 eV Total energy + Delta-G solvation = -2608.234271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.99356 -38.95468 -35.84381 -34.12581 -31.71334 -31.11027 -29.81794 -28.27534 -27.92015 -25.60779 -23.75781 -22.82469 -21.55594 -19.69373 -19.20548 -17.32411 -17.04149 -16.05940 -15.82017 -15.60973 -15.54760 -15.15807 -14.80375 -14.26331 -13.94856 -13.79458 -13.57167 -13.43772 -13.13858 -12.95522 -12.83006 -12.68863 -12.55615 -12.30951 -12.11313 -12.04725 -11.91883 -11.51340 -11.35900 -11.29026 -11.18985 -10.97790 -9.33048 -9.29708 -9.06188 -8.61846 -6.32042 0.96922 1.16657 1.37763 1.51266 1.52097 2.21293 2.70691 3.39564 3.81579 3.90883 4.03296 4.28453 4.34560 4.37224 4.50082 4.57542 4.63295 4.68180 4.71684 4.76296 4.83026 4.96013 5.03458 5.07651 5.13660 5.17183 5.20435 5.24597 5.28327 5.40399 5.48796 5.52317 5.54468 5.73118 5.97499 6.11990 6.25201 6.37772 6.41493 6.61221 6.73090 6.96026 7.06465 8.34913 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.047080 B = 0.004217 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.584563 B = 6637.445436 C = 6840.937736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.104 3.896 4 C -0.139 4.139 5 C -0.178 4.178 6 N -0.687 5.687 7 C 0.130 3.870 8 C -0.198 4.198 9 C -0.087 4.087 10 C -0.191 4.191 11 C 0.079 3.921 12 C -0.505 4.505 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.826 5.826 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.243 4.243 21 C -0.086 4.086 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.336 0.664 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.287 0.713 39 H 0.095 0.905 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 -0.172 -2.323 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.014 3.986 4 C -0.196 4.196 5 C -0.237 4.237 6 N -0.318 5.318 7 C 0.002 3.998 8 C -0.200 4.200 9 C -0.106 4.106 10 C -0.211 4.211 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.263 4.263 21 C -0.104 4.104 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.093 -0.392 -1.425 14.171 hybrid contribution 1.019 0.235 -0.671 1.242 sum -13.075 -0.157 -2.097 13.243 Atomic orbital electron populations 1.21852 0.94034 1.02186 1.02498 1.21489 0.96860 0.94638 1.01713 1.21060 0.86588 0.95955 0.95043 1.21924 1.01320 0.99638 0.96764 1.22551 1.02688 1.00561 0.97875 1.60719 1.06861 1.14088 1.50103 1.20509 0.89677 0.89730 0.99860 1.19400 0.94874 1.13321 0.92390 1.20723 0.93629 0.99382 0.96893 1.21272 0.93610 1.08278 0.97923 1.17958 0.93941 0.88581 0.91872 1.19845 0.92176 1.38183 1.03207 0.90821 1.26759 1.05496 0.91693 0.94034 1.69893 1.40666 1.23113 1.11573 0.85204 0.76015 0.78954 0.79508 1.18695 1.19206 1.18205 1.21151 0.94456 1.14163 0.96527 1.20678 0.93494 0.99468 0.96802 0.91933 0.91837 0.92130 0.92484 0.92564 0.93227 0.90322 0.93214 0.92981 0.90363 0.93017 0.84613 0.91360 0.94593 0.88289 0.88461 0.90229 0.88717 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.21 71.98 0.66 -1.69 16 2 C -0.11 -2.32 5.25 30.59 0.16 -2.16 16 3 C 0.10 2.46 0.74 3.53 0.00 2.46 16 4 C -0.14 -3.14 7.88 71.98 0.57 -2.57 16 5 C -0.18 -3.67 7.88 71.98 0.57 -3.11 16 6 N -0.69 -21.21 6.08 -474.16 -2.88 -24.09 16 7 C 0.13 4.36 5.02 85.56 0.43 4.79 16 8 C -0.20 -8.49 5.42 -19.68 -0.11 -8.60 16 9 C -0.09 -4.21 9.67 22.22 0.21 -3.99 16 10 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 11 C 0.08 4.41 5.58 -21.29 -0.12 4.29 16 12 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 13 H 0.07 3.98 7.91 -2.91 -0.02 3.95 16 14 C 0.03 1.81 5.14 85.26 0.44 2.25 16 15 N -0.83 -44.82 10.95 21.82 0.24 -44.58 16 16 Si 0.98 39.31 29.60 68.60 2.03 41.34 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 C -0.24 -12.29 9.80 22.73 0.22 -12.07 16 21 C -0.09 -3.78 9.67 22.22 0.21 -3.56 16 22 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 23 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.17 6.40 -2.39 -0.02 1.15 16 28 H 0.08 1.39 6.43 -2.39 -0.02 1.38 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.31 6.43 -2.39 -0.02 1.30 16 32 H 0.05 1.14 6.40 -2.39 -0.02 1.12 16 33 H 0.34 10.61 8.71 -89.70 -0.78 9.83 16 34 H 0.07 2.25 6.24 -2.38 -0.01 2.23 16 35 H 0.04 1.11 6.24 -2.39 -0.01 1.10 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.59 16 38 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 39 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -59.56 313.90 3.29 -56.27 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.24 Total: 33.30 kcal Atomic # 6 Polarization: -65.90 SS G_CDS: 3.67 Total: -62.23 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -2.64 Total: -68.67 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -59.56 3.29 -56.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381319586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.846 kcal (2) G-P(sol) polarization free energy of solvation -59.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds