Wall clock time and date at job start Mon Mar 30 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 C 1.50699 * 109.46714 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99760 * 270.02019 * 4 3 2 6 6 C 1.38214 * 120.00292 * 179.97438 * 5 4 3 7 7 C 1.38264 * 119.99432 * 359.81088 * 6 5 4 8 8 C 1.38215 * 119.99942 * 0.41922 * 7 6 5 9 9 C 1.50697 * 119.99689 * 179.80908 * 8 7 6 10 10 N 1.46900 * 109.47224 * 269.72864 * 9 8 7 11 11 C 1.46903 * 111.00000 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47052 * 34.99701 * 11 10 9 13 13 C 1.53000 * 109.47096 * 275.00251 * 11 10 9 14 14 C 1.50694 * 109.47066 * 155.00016 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.38211 * 120.00241 * 90.00403 * 4 3 2 23 23 H 1.09000 * 109.47413 * 59.99485 * 1 2 3 24 24 H 1.09001 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 299.99527 * 1 2 3 26 26 H 1.08996 * 109.46601 * 240.00139 * 2 1 3 27 27 H 1.08994 * 109.47273 * 120.00094 * 2 1 3 28 28 H 1.09001 * 109.46672 * 60.00224 * 3 2 1 29 29 H 1.08999 * 109.46705 * 300.00328 * 3 2 1 30 30 H 1.08001 * 120.00409 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.00411 * 180.02562 * 6 5 4 32 32 H 1.07996 * 119.99566 * 180.23349 * 7 6 5 33 33 H 1.09002 * 109.46917 * 149.72743 * 9 8 7 34 34 H 1.09001 * 109.47224 * 29.72848 * 9 8 7 35 35 H 1.00896 * 110.99858 * 303.95284 * 10 9 8 36 36 H 1.08998 * 109.47089 * 59.99840 * 13 11 10 37 37 H 1.08995 * 109.47131 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47106 * 299.99893 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.99926 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2388 1.4418 1.1964 6 6 5.6209 1.4412 1.1960 7 6 6.3117 1.4373 -0.0017 8 6 5.6202 1.4427 -1.1984 9 6 6.3732 1.4428 -2.5037 10 7 6.6176 2.8278 -2.9280 11 6 7.3508 2.8670 -4.2004 12 1 7.0327 2.0351 -4.8288 13 6 8.8521 2.7550 -3.9274 14 6 7.0641 4.1676 -4.9055 15 1 6.4029 4.8924 -4.4539 16 6 7.6450 4.4318 -6.1277 17 7 8.4497 3.5490 -6.6779 18 14 7.2889 6.0437 -7.0021 19 1 6.1031 5.8789 -7.8806 20 1 7.0171 7.1025 -5.9970 21 1 8.4637 6.4310 -7.8237 22 6 4.2376 1.4427 -1.1978 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6992 1.4409 2.1320 31 1 6.1613 1.4403 2.1310 32 1 7.3917 1.4330 -0.0021 33 1 5.7839 0.9287 -3.2631 34 1 7.3257 0.9291 -2.3737 35 1 5.7530 3.3438 -2.9932 36 1 9.0595 1.8143 -3.4174 37 1 9.3962 2.7845 -4.8714 38 1 9.1702 3.5868 -3.2990 39 1 8.8581 3.7347 -7.5379 40 1 3.6973 1.4425 -2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381445767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:09 Heat of formation + Delta-G solvation = -2.654965 kcal Electronic energy + Delta-G solvation = -17286.723029 eV Core-core repulsion = 14679.042465 eV Total energy + Delta-G solvation = -2607.680564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35471 -36.10969 -34.99184 -32.86553 -31.03155 -30.86834 -28.09285 -26.42358 -25.35662 -24.23040 -22.25865 -21.45524 -20.10707 -19.71009 -16.68446 -16.12018 -15.67180 -14.99742 -14.75659 -14.56281 -13.89207 -13.76511 -13.64636 -13.37278 -12.99857 -12.36557 -12.27008 -12.15423 -11.88216 -11.65001 -11.34616 -11.25298 -11.00530 -10.88024 -10.77698 -10.65581 -10.52344 -10.23993 -10.11431 -9.91108 -8.84604 -8.58286 -8.47204 -8.35194 -7.25543 -6.02451 -4.08847 1.59649 1.62201 3.29687 3.36329 3.40686 3.96590 4.41172 4.72839 4.81051 4.98305 5.08156 5.15819 5.28745 5.32635 5.35107 5.43679 5.58669 5.63325 5.70514 5.74156 5.80013 5.85575 6.01186 6.03446 6.16210 6.18711 6.35469 6.38336 6.69215 6.77936 6.87065 7.00106 7.14464 7.23458 7.25648 7.50495 7.78549 7.90015 8.27756 8.39309 8.67107 9.01765 9.57083 11.03905 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.004353 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.622920 B = 6431.062329 C = 7071.718393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.079 4.079 4 C -0.086 4.086 5 C -0.128 4.128 6 C -0.121 4.121 7 C -0.105 4.105 8 C -0.062 4.062 9 C 0.095 3.905 10 N -0.682 5.682 11 C 0.210 3.790 12 H 0.001 0.999 13 C -0.124 4.124 14 C -0.518 4.518 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.273 1.273 21 H -0.286 1.286 22 C -0.113 4.113 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.331 0.669 36 H 0.004 0.996 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -6.682 13.549 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.035 4.035 10 N -0.313 5.313 11 C 0.103 3.897 12 H 0.019 0.981 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.132 4.132 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.023 0.977 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.055 -6.639 13.741 18.275 hybrid contribution -0.735 0.615 -1.146 1.494 sum -10.790 -6.025 12.594 17.645 Atomic orbital electron populations 1.21795 0.95888 1.01529 1.01795 1.21509 0.95425 0.96339 1.02348 1.20606 0.91240 0.97115 1.02673 1.19780 0.95260 1.00390 0.93183 1.20896 0.94220 1.02451 0.97098 1.21077 0.94211 1.00798 0.97829 1.21043 0.99993 0.99559 0.91755 1.20050 0.93339 0.97170 0.95688 1.20916 0.98046 0.93107 0.91401 1.60798 1.25579 1.09300 1.35595 1.19137 0.90972 0.96182 0.83398 0.98142 1.21715 0.99011 0.96362 1.01182 1.21265 1.28291 1.02726 1.03381 0.92217 1.24922 0.94958 0.96948 0.97177 1.69901 1.30800 1.34744 1.17471 0.86518 0.77718 0.83763 0.79537 1.20757 1.19823 1.21184 1.20946 0.93762 1.01095 0.97391 0.92651 0.92823 0.92833 0.91814 0.92016 0.91322 0.91090 0.86803 0.86527 0.86116 0.95463 0.91014 0.85166 0.97717 0.90082 0.94943 0.92927 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 3 C -0.08 -0.82 5.34 -27.88 -0.15 -0.97 16 4 C -0.09 -1.11 5.13 -104.63 -0.54 -1.65 16 5 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 6 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 7 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 8 C -0.06 -1.01 5.39 -104.63 -0.56 -1.57 16 9 C 0.09 1.77 5.61 -4.98 -0.03 1.74 16 10 N -0.68 -14.97 6.29 -109.22 -0.69 -15.66 16 11 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 12 H 0.00 0.03 7.80 -51.92 -0.40 -0.38 16 13 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 14 C -0.52 -14.40 8.59 -34.44 -0.30 -14.69 16 15 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -1.68 9.36 -39.59 -0.37 -2.05 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.07 1.35 7.38 -51.93 -0.38 0.96 16 35 H 0.33 7.21 8.21 -39.29 -0.32 6.89 16 36 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -28.80 328.37 -9.80 -38.60 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.83 Total: 3.87 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.83 Total: -23.15 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.06 Total: -40.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.80 -9.80 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381445767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.944 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds