Wall clock time and date at job start Mon Mar 30 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 C 1.50699 * 109.46714 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99760 * 270.02019 * 4 3 2 6 6 C 1.38214 * 120.00292 * 179.97438 * 5 4 3 7 7 C 1.38264 * 119.99432 * 359.81088 * 6 5 4 8 8 C 1.38215 * 119.99942 * 0.41922 * 7 6 5 9 9 C 1.50697 * 119.99689 * 179.80908 * 8 7 6 10 10 N 1.46900 * 109.47224 * 269.72864 * 9 8 7 11 11 C 1.46903 * 111.00000 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47052 * 34.99701 * 11 10 9 13 13 C 1.53000 * 109.47096 * 275.00251 * 11 10 9 14 14 C 1.50694 * 109.47066 * 155.00016 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.38211 * 120.00241 * 90.00403 * 4 3 2 23 23 H 1.09000 * 109.47413 * 59.99485 * 1 2 3 24 24 H 1.09001 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 299.99527 * 1 2 3 26 26 H 1.08996 * 109.46601 * 240.00139 * 2 1 3 27 27 H 1.08994 * 109.47273 * 120.00094 * 2 1 3 28 28 H 1.09001 * 109.46672 * 60.00224 * 3 2 1 29 29 H 1.08999 * 109.46705 * 300.00328 * 3 2 1 30 30 H 1.08001 * 120.00409 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.00411 * 180.02562 * 6 5 4 32 32 H 1.07996 * 119.99566 * 180.23349 * 7 6 5 33 33 H 1.09002 * 109.46917 * 149.72743 * 9 8 7 34 34 H 1.09001 * 109.47224 * 29.72848 * 9 8 7 35 35 H 1.00896 * 110.99858 * 303.95284 * 10 9 8 36 36 H 1.08998 * 109.47089 * 59.99840 * 13 11 10 37 37 H 1.08995 * 109.47131 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47106 * 299.99893 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.99926 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2388 1.4418 1.1964 6 6 5.6209 1.4412 1.1960 7 6 6.3117 1.4373 -0.0017 8 6 5.6202 1.4427 -1.1984 9 6 6.3732 1.4428 -2.5037 10 7 6.6176 2.8278 -2.9280 11 6 7.3508 2.8670 -4.2004 12 1 7.0327 2.0351 -4.8288 13 6 8.8521 2.7550 -3.9274 14 6 7.0641 4.1676 -4.9055 15 1 6.4029 4.8924 -4.4539 16 6 7.6450 4.4318 -6.1277 17 7 8.4497 3.5490 -6.6779 18 14 7.2889 6.0437 -7.0021 19 1 6.1031 5.8789 -7.8806 20 1 7.0171 7.1025 -5.9970 21 1 8.4637 6.4310 -7.8237 22 6 4.2376 1.4427 -1.1978 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6992 1.4409 2.1320 31 1 6.1613 1.4403 2.1310 32 1 7.3917 1.4330 -0.0021 33 1 5.7839 0.9287 -3.2631 34 1 7.3257 0.9291 -2.3737 35 1 5.7530 3.3438 -2.9932 36 1 9.0595 1.8143 -3.4174 37 1 9.3962 2.7845 -4.8714 38 1 9.1702 3.5868 -3.2990 39 1 8.8581 3.7347 -7.5379 40 1 3.6973 1.4425 -2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381445767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:09 Heat of formation + Delta-G solvation = -17.634954 kcal Electronic energy + Delta-G solvation = -17287.372610 eV Core-core repulsion = 14679.042465 eV Total energy + Delta-G solvation = -2608.330145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45677 -37.78962 -36.03117 -34.65720 -32.52811 -31.86711 -29.83559 -27.46926 -27.22734 -25.82883 -23.16818 -22.48135 -21.77814 -21.13064 -18.59986 -17.33180 -16.94922 -16.64399 -15.99464 -15.76640 -15.50451 -15.15561 -14.75801 -14.53838 -14.26281 -13.97733 -13.55644 -13.32692 -13.07578 -12.85166 -12.83088 -12.71437 -12.64332 -12.37027 -12.20692 -12.10178 -11.99977 -11.74659 -11.51873 -11.42508 -10.92799 -10.59609 -9.69769 -9.46769 -9.08265 -8.15213 -6.29907 0.49017 0.53754 1.41127 1.42378 1.53426 2.40385 2.86345 3.13328 3.69812 3.86745 3.96584 4.02090 4.21263 4.27335 4.29797 4.44684 4.54653 4.59107 4.70739 4.75374 4.81874 4.86179 4.91022 5.03681 5.04968 5.14504 5.18340 5.19083 5.31882 5.32884 5.43751 5.47326 5.61758 5.64069 5.75546 5.81285 5.83482 6.18097 6.19790 6.43142 6.72301 6.95156 7.40549 8.90592 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.004353 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.622920 B = 6431.062329 C = 7071.718393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.077 4.077 4 C -0.085 4.085 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.082 4.082 9 C 0.101 3.899 10 N -0.678 5.678 11 C 0.214 3.786 12 H -0.030 1.030 13 C -0.113 4.113 14 C -0.540 4.540 15 H 0.058 0.942 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.268 1.268 21 H -0.281 1.281 22 C -0.127 4.127 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.331 0.669 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -6.163 15.311 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.114 4.114 4 C -0.085 4.085 5 C -0.142 4.142 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.083 4.083 9 C -0.028 4.028 10 N -0.309 5.309 11 C 0.106 3.894 12 H -0.013 1.013 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.076 0.924 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.193 1.193 21 H -0.207 1.207 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.433 -6.130 15.518 20.226 hybrid contribution -0.341 0.390 -1.623 1.704 sum -11.774 -5.740 13.895 19.095 Atomic orbital electron populations 1.21776 0.94649 1.02125 1.02226 1.21478 0.96477 0.95460 1.01947 1.20653 0.89401 0.97969 1.03402 1.20083 0.96713 0.99105 0.92649 1.21299 0.94182 1.00664 0.98074 1.21393 0.94757 0.99447 0.98017 1.21149 1.00160 1.00372 0.92224 1.19847 0.93896 0.99822 0.94711 1.20846 0.98179 0.90999 0.92804 1.60720 1.25489 1.11481 1.33210 1.18959 0.91610 0.94418 0.84430 1.01285 1.21540 0.98471 0.97105 1.00012 1.21572 1.28628 1.03466 1.04155 0.92386 1.25750 0.94624 1.00353 0.97846 1.70025 1.31384 1.36473 1.17811 0.85460 0.77731 0.79521 0.78332 1.19996 1.19287 1.20676 1.21012 0.93306 1.01868 0.98339 0.92822 0.92198 0.91810 0.93102 0.91570 0.89561 0.91403 0.83697 0.83765 0.86294 0.96212 0.91480 0.85207 0.95921 0.92293 0.95315 0.92741 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.94 5.92 30.60 0.18 -1.75 16 3 C -0.08 -1.43 5.34 29.85 0.16 -1.27 16 4 C -0.09 -2.05 5.13 -19.87 -0.10 -2.16 16 5 C -0.12 -2.70 9.70 22.27 0.22 -2.49 16 6 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 7 C -0.12 -3.53 9.70 22.27 0.22 -3.32 16 8 C -0.08 -2.69 5.39 -19.87 -0.11 -2.80 16 9 C 0.10 3.88 5.61 85.56 0.48 4.36 16 10 N -0.68 -30.50 6.29 -499.46 -3.14 -33.65 16 11 C 0.21 11.34 2.60 44.17 0.11 11.45 16 12 H -0.03 -1.77 7.80 -2.38 -0.02 -1.79 16 13 C -0.11 -5.82 9.19 71.98 0.66 -5.16 16 14 C -0.54 -30.48 8.59 25.60 0.22 -30.26 16 15 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 16 C 0.01 0.76 5.30 84.66 0.45 1.21 16 17 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.13 -3.72 9.36 22.27 0.21 -3.52 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 34 H 0.07 2.60 7.38 -2.39 -0.02 2.58 16 35 H 0.33 14.76 8.21 -89.70 -0.74 14.02 16 36 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 37 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.11 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -61.66 328.37 3.02 -58.64 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.25 Total: 21.95 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 3.63 Total: -39.58 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.90 Total: -87.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.66 3.02 -58.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381445767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.009 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds